mRNA_Ecto-sp13_S_contig8063.19403.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8063.19403.1
Unique NamemRNA_Ecto-sp13_S_contig8063.19403.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8063.19403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8063contigEcto-sp13_S_contig8063:1772..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size636
Hectar predicted targeting categoryother localisation
Exons3
Cds size627
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.6346002-UTR-Ecto-sp13_S_contig8063:1771..17801681464079.6346002-UTR-Ecto-sp13_S_contig8063:1771..1780Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8063 1772..1780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.6444714-CDS-Ecto-sp13_S_contig8063:1780..19141681464079.6444714-CDS-Ecto-sp13_S_contig8063:1780..1914Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8063 1781..1914 +
1681464079.6566238-CDS-Ecto-sp13_S_contig8063:2556..28731681464079.6566238-CDS-Ecto-sp13_S_contig8063:2556..2873Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8063 2557..2873 +
1681464079.6748376-CDS-Ecto-sp13_S_contig8063:3060..32361681464079.6748376-CDS-Ecto-sp13_S_contig8063:3060..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8063 3061..3236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8063.19403.1prot_Ecto-sp13_S_contig8063.19403.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8063 1781..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8063.19403.1

>prot_Ecto-sp13_S_contig8063.19403.1 ID=prot_Ecto-sp13_S_contig8063.19403.1|Name=mRNA_Ecto-sp13_S_contig8063.19403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MLGSIGVLGSPAEQEAWAKNLDELRAQKGRQVMRDFLKIRGDKKGRSKNG
LLACKLLGHYAKLVLVSTAATHAVGDRIAGAWDLPCTNSASLIELCSFLT
GGTVEERASTGKTLAGRAKAMGQGWLRRARRALNALSDAGHTRGTVLCLR
GEEIEVDGERLEFPFALPDQPGTAAADTMPLCFPLLDDLRSAVTPAAEPA
VPDSAATTS
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mRNA from alignment at Ecto-sp13_S_contig8063:1772..3236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8063.19403.1 ID=mRNA_Ecto-sp13_S_contig8063.19403.1|Name=mRNA_Ecto-sp13_S_contig8063.19403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8063:1772..3236+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAATCGATGCTTGGCTCCATCGGGGTGCTGGGCAGCCCGGCAGAGCA
GGAGGCATGGGCGAAGAACCTGGACGAGCTGAGGGCTCAAAAGGGGAGAC
AAGTCATGCGGGACTTCCTGAAGATTCGCGGAGACAAAAAAGGGTGAGTC
AGATATGACGTTGTCGTATCGTCGTTTGAATATTGTAGGTCTGCCCTTTT
TGGCCTGTTCCGTGTCAACAGTTTGTTTTCTTTTCTAGATGCAACAGTAA
TAACACCATGAATCTCGGACCCCATAAAGAAAGAAAAACACAGATCGCCC
CTCGCCCGTGTCTAGGGAGGGGCATGATTGTTTGCCTCGTCGTAATGTCG
GTAAGTCCCCTCGAAACAGGTACACAAGACAAGTCGAGCCTGATGGCGAT
GAGCGACTTCGGCCCCAAAATATTTTCATTGAGGCCCTGGGCGCACCACG
CTCTCGCGTAGTGCGTACCATTTCGCACGCTCTCTCTCTCTCCCTCCCTG
TCTCTCTCTCTCTCTCTCTCCGCCTTCTCGAGGCGGCGGGCGGATTTGTT
CGACAGCCCTGACCGGGGGGGAGTCTCATTGGTCGTTTCATGTCGACCAC
GTATTTTACATCTTCAGTCACGTCTTCCGCTCCGCCCTGGTGTTGGTCTT
TGTGGACTTTTGTCGTATGGAACAGCAGTAGGCAGGAGCAAGTGCCATTC
CTGTATCTTGGCGATTGTCTTTCTTGTACGGGGTGTAATATTTCGTCGGT
CGGTCGGTCGGTCGGTCGGTGGTTGTTGTTGACAGACGGTCGAAGAACGG
GCTGCTTGCATGCAAGCTCTTGGGCCACTACGCCAAGCTGGTCCTGGTGT
CGACGGCGGCGACACACGCGGTTGGCGACCGCATTGCGGGAGCGTGGGAC
CTACCGTGCACCAACTCGGCCTCCTTGATAGAGCTCTGTTCCTTTCTGAC
GGGAGGCACGGTAGAGGAGAGGGCCTCTACTGGGAAGACCCTGGCGGGTA
GGGCCAAGGCAATGGGTCAGGGCTGGCTACGTCGAGCAAGGCGCGCGCTC
AACGCCTTGTCGGATGCGGGGCACACCCGCGGGACCGTCCTCTGTCTGCG
AGGTGAGAGTCCGTTGTACACCAACGCCCACCGCCCCAGCCCGCGTAGTG
TCTATAATAACAAGAGACAAAACAACTTACACACAAAAACACGCACCCGT
TCGACTGAAAGGTTATATCTCGAATGAAATCTGGGTATTCTCTCTCTTTG
ATTGCATTTTATGTTTCACGACTCACACGTTGCGAACAGGCGAGGAGATC
GAGGTGGACGGCGAGAGGCTCGAGTTTCCGTTCGCGCTCCCCGATCAGCC
AGGCACGGCCGCCGCCGACACGATGCCTTTGTGCTTCCCCTTGCTGGACG
ACTTGCGCTCTGCGGTGACTCCGGCCGCAGAACCCGCCGTGCCTGACTCT
GCCGCGACGACATCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8063:1772..3236+

>mRNA_Ecto-sp13_S_contig8063.19403.1 ID=mRNA_Ecto-sp13_S_contig8063.19403.1|Name=mRNA_Ecto-sp13_S_contig8063.19403.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8063:1772..3236+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGCTCCATCGGGGTGCTGGGCAGCCCGGCAGAGCAGGAGGCATG
GGCGAAGAACCTGGACGAGCTGAGGGCTCAAAAGGGGAGACAAGTCATGC
GGGACTTCCTGAAGATTCGCGGAGACAAAAAAGGACGGTCGAAGAACGGG
CTGCTTGCATGCAAGCTCTTGGGCCACTACGCCAAGCTGGTCCTGGTGTC
GACGGCGGCGACACACGCGGTTGGCGACCGCATTGCGGGAGCGTGGGACC
TACCGTGCACCAACTCGGCCTCCTTGATAGAGCTCTGTTCCTTTCTGACG
GGAGGCACGGTAGAGGAGAGGGCCTCTACTGGGAAGACCCTGGCGGGTAG
GGCCAAGGCAATGGGTCAGGGCTGGCTACGTCGAGCAAGGCGCGCGCTCA
ACGCCTTGTCGGATGCGGGGCACACCCGCGGGACCGTCCTCTGTCTGCGA
GGCGAGGAGATCGAGGTGGACGGCGAGAGGCTCGAGTTTCCGTTCGCGCT
CCCCGATCAGCCAGGCACGGCCGCCGCCGACACGATGCCTTTGTGCTTCC
CCTTGCTGGACGACTTGCGCTCTGCGGTGACTCCGGCCGCAGAACCCGCC
GTGCCTGACTCTGCCGCGACGACATCG
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