mRNA_Ecto-sp13_S_contig8054.19389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8054.19389.1
Unique NamemRNA_Ecto-sp13_S_contig8054.19389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8054.19389.1 vs. uniprot
Match: A0A6H5JW70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW70_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.940e-68
Identity = 412/481 (85.65%), Postives = 420/481 (87.32%), Query Frame = 1 
Query:    1 MVKECCQKGCVKRPSYGRYGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSAVPVFXXXXXXXXXXXTRLAKFRSTRAPALHPPRPSPXXXXXXXXXXXXXXXXXXXXSAFRPSAFPAXXXXXXXXXXXXXX---------GAVGVKGQPARLDGSGGDVGGSVGGAWRPGGVGSAAAGVTEGISAAGGVGVEVGAAAAIGXXXXXXXXXXSPAAADADGAGDLLLALSGKTTGSWSRTPEPSAISRPSEPPAKRQKPEGDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEHDDRGEGEEEHAETRPQSINST 1416
            MVKECC+KGCVKRPSYG+YGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKP+LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSAVPVFXXXXXXXXXXXTRLAKFRSTRAPAL PPR   XXXXXXXXXXXXXXX     SAFRPSAFPA   XXXXXXXXXXX         GAVGVKGQPARLDGSGGDVGG VGGAWRPGG+ +AA G TEGISAAGGVGV         XXXXXXXXXXSPAAADADGA DLLLALSGKT GSW RTPEPS ISRPSEPPAKRQKPE DD+     XXXXXXXXXXXXXXX             P+HD  GE EEE AETRPQSI+ST
Sbjct:    1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKPELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSAVPVFXXXXXXXXXXXTRLAKFRSTRAPALPPPRXX-XXXXXXXXXXXXXXXLPIVASAFRPSAFPAPAAXXXXXXXXXXXXXXXXXXXXGAVGVKGQPARLDGSGGDVGGGVGGAWRPGGIAAAAVGGTEGISAAGGVGVXXXXXXXXXXXXXXXXXXXSPAAADADGAEDLLLALSGKTAGSW-RTPEPSTISRPSEPPAKRQKPEEDDNDRDSGXXXXXXXXXXXXXXXDDQ----------PKHDVWGE-EEEQAETRPQSIDST 468
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BLAST of mRNA_Ecto-sp13_S_contig8054.19389.1 vs. uniprot
Match: D8LG50_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG50_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 8.620e-30
Identity = 317/473 (67.02%), Postives = 322/473 (68.08%), Query Frame = 1 
Query:    1 MVKECCQKGCVKRPSYGRYGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKPQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGSAVPVFXXXXXXXXXXXTRLAKFRSTRAPALHPPRPSPXXXXXXXXXXXXXXXXXXXXSAFRPSAFPAXXXXXXXXXXXXXXGAVGVKGQPARLDGSGGDVGGSVGGAWRPGGVGSAAAGVTEGISAAGGVGVEVGAAAAIGXXXXXXXXXXSPAA-ADADGAGDLLLALSGKTTGSWSRTPEPSAISRPSEPPAKRQKPEGDDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEHDDRGEGEEEHAETRPQSINST 1416
            MVKECC+KGCVKRPSYG+YGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKP+LXXXXXXXXXXXX                                         + +S                                                         GAVGVKGQPARLDGSGG VGG    AWRPG                  VGVEVGAA    XXXXXXXXXX     ADADGAGDLLLALSGKTTGSWSRTPEP AISRPSEPPAKRQKPEGDD            XXXXXXXXXXXXXXXXXXXXX PEH   GE E E AETRPQSINST
Sbjct:    1 MVKECCRKGCVKRPSYGKYGSTKAEYCAQHAEDNMIDVRSKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSAKPELXXXXXXXXXXXX-----------------------------------------RIKSNGG------------------------------------------------------GAVGVKGQPARLDGSGGGVGG----AWRPGXXXXXXXXXXXXXXXXXXVGVEVGAAXXXXXXXXXXXXXXXXXXXADADGAGDLLLALSGKTTGSWSRTPEPPAISRPSEPPAKRQKPEGDD------------XXXXXXXXXXXXXXXXXXXXXQPEHGVGGEEEGEQAETRPQSINST 362
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BLAST of mRNA_Ecto-sp13_S_contig8054.19389.1 vs. uniprot
Match: A0A6H5JZ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ54_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.700e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 KECCQKGCVKRPSYGRYGSTKAEYCAQHAEDNMIDVRSKR 126
            + C + GC  RPSYGR  S KAE+C+QH E  MIDVRSK+
Sbjct:   27 RSCREHGCTTRPSYGRAHSKKAEFCSQHRERGMIDVRSKK 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8054.19389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JW70_9PHAE3.940e-6885.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG50_ECTSI8.620e-3067.02EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JZ54_9PHAE9.700e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8054contigEcto-sp13_S_contig8054:3763..6291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1419
Hectar predicted targeting categoryother localisation
Exons2
Cds size1419
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464078.6262124-CDS-Ecto-sp13_S_contig8054:3762..40151681464078.6262124-CDS-Ecto-sp13_S_contig8054:3762..4015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8054 3763..4015 -
1681464078.6374269-CDS-Ecto-sp13_S_contig8054:5125..62911681464078.6374269-CDS-Ecto-sp13_S_contig8054:5125..6291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8054 5126..6291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8054.19389.1prot_Ecto-sp13_S_contig8054.19389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8054 3763..6291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8054.19389.1

>prot_Ecto-sp13_S_contig8054.19389.1 ID=prot_Ecto-sp13_S_contig8054.19389.1|Name=mRNA_Ecto-sp13_S_contig8054.19389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=473bp
MVKECCQKGCVKRPSYGRYGSTKAEYCAQHAEDNMIDVRSKRCGHAGCTT
RPSYGINGTTKAQFCATHAADGMVNVRSKRCSHQGCTTRPSYGVDGTKKA
EYCTRHALANMVDVRSKRCGRQGCNTWPSYGVEGSNRAVFCARHADPHMV
DVCNKRCGTRGCTIRPSHGFEGSSAKPQLCQRHAEPGMIDVRIKRCGHRG
CEHPPTYGAPGSAVPVFCQRHSQVGMVRTRLAKFRSTRAPALHPPRPSPP
PSTTTPPLQQRQQKPPIVASAFRPSAFPAPAAAAAAAAFSAGGGAVGVKG
QPARLDGSGGDVGGSVGGAWRPGGVGSAAAGVTEGISAAGGVGVEVGAAA
AIGGGGSGGEDGGSPAAADADGAGDLLLALSGKTTGSWSRTPEPSAISRP
SEPPAKRQKPEGDDDDRDSGDNNGENNGDGDGDGDGGGGGDWNGDDDQPE
HDDRGEGEEEHAETRPQSINST*
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mRNA from alignment at Ecto-sp13_S_contig8054:3763..6291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8054.19389.1 ID=mRNA_Ecto-sp13_S_contig8054.19389.1|Name=mRNA_Ecto-sp13_S_contig8054.19389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8054:3763..6291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAGGAGTGCTGTCAAAAGGGATGCGTGAAGCGTCCAAGCTACGG
CAGGTACGGGAGCACCAAGGCCGAGTACTGTGCGCAGCACGCAGAGGACA
ATATGATCGATGTGAGGAGCAAGCGGTGCGGCCACGCCGGTTGCACCACG
CGGCCGTCGTATGGCATCAACGGGACTACCAAGGCCCAGTTCTGTGCCAC
GCATGCGGCAGACGGTATGGTGAACGTCCGCTCCAAGAGGTGTAGCCACC
AAGGTTGCACCACCAGGCCAAGCTACGGCGTCGACGGCACCAAGAAGGCC
GAGTACTGCACGCGGCACGCGCTGGCCAATATGGTCGACGTCCGCAGCAA
GAGGTGCGGCCGCCAGGGGTGCAACACGTGGCCCAGCTACGGCGTAGAGG
GAAGCAACAGGGCGGTGTTCTGCGCGCGGCACGCGGATCCCCATATGGTG
GACGTCTGCAACAAGAGGTGCGGGACTCGCGGTTGCACGATCCGACCAAG
CCACGGCTTCGAGGGCAGCTCCGCCAAGCCCCAGCTGTGCCAGCGGCATG
CGGAGCCCGGTATGATCGACGTCCGAATAAAGAGGTGCGGTCACCGGGGT
TGCGAGCACCCGCCGACCTACGGCGCCCCGGGCTCCGCCGTTCCCGTGTT
TTGTCAACGGCACTCGCAAGTTGGGATGGTGCGCACACGGCTGGCCAAGT
TTCGGAGCACCCGTGCGCCGGCTCTTCATCCTCCTCGCCCGTCACCACCA
CCATCAACAACAACACCACCTCTGCAGCAGCGGCAGCAGAAGCCGCCCAT
CGTCGCTTCCGCCTTCCGGCCCTCTGCCTTCCCTGCTCCCGCTGCTGCTG
CTGCTGCGGCCGCTTTCTCTGCGGGCGGTGGAGCTGTGGGGGTGAAGGGC
CAACCGGCCAGGCTCGACGGCAGCGGTGGCGATGTCGGCGGTAGTGTTGG
CGGGGCGTGGCGCCCTGGCGGAGTCGGATCAGCGGCGGCGGGGGTCACGG
AAGGAATCTCAGCGGCGGGAGGGGTCGGAGTGGAAGTAGGAGCGGCGGCG
GCGATAGGAGGGGGAGGTAGCGGGGGAGAAGACGGCGGCAGCCCTGCCGC
CGCCGATGCGGATGGAGCCGGAGACCTGCTGCTGGCTCTAAGCGGCAAGA
CGACTGGGAGCTGGAGGTATGTATGTCCCTTGGTAACTGCAGTAACAGCT
GTCAATGTGTGTGTGTGTGCGTGTTGTGTGCGTGTGTGTGTGTGCGATGC
TCTGTTTATGTGAAAAAGTAGGATACGTGTGCTCTGCTCAAAGATTTGGT
CTCTTCTCATGATACACTCCACGAACCGACCGTCCCTAAGGTGTCATACA
CATTCAAAGCTCGCCTGTGCTCCGCGGCAGGAACAGTAGAGGTGCCGGTA
ACGGCGGCGTCGGAAAATTATCGTCGAGAACTTTCGTAAAGCGCGTCGTT
TGAATTGTTCGTCCTCTTGGTTGTAGGGTGATAATACTCAAGGTACGTCA
CTGCTATTTAGGGTGACTAACGCCACGACTGCTGTACTAGGTAATTTAGA
GCAAAGAGCCCCCGTCGTCGTGTTCAGGCGCAAGTGTTCCACATCAATGT
TGTTGTCGCTACGGTGTGGTCAACACAAGTACGCTTCGCGCCGCACAAAG
AGATTCCAAGAGGGACTTCAAGCTTTTGCTTGTCGGCAGATTTGAGCCTC
GTCGTCCTACACTTGCCATGTTCTTAGACGGTGGCTTTGTATGTATGGAC
ACTACTTTGTTTTCTTTGCACGACGAAGGCGTTTTGTTTTTCGTTGGAAA
AAGAGCACACGGGGGTTGATTTGACCCAATTGGCACACGCAATATTTTAA
AATTTCGTTTTGCTTGAGCAGTGTGTGTGTGAGCGTAATGTTCTGTGTGG
ATTGCAGTGGGTCGTCCCTGTTACTGCATGCTTCGTTTTGTTGTGCCCCC
GTCTCTTTGTTCCGTGTTTCGATGGGGGAGTGTTTTTGATTTGTGTGCAC
ACTTGACGAGAGGGGCGGGTGGACCCTGCTAGTGTCGGCATAGGGAGGCG
GACAGCACGCACGGATAGATAACGAGCAGTCTTGGAAGAGAGGAATCCCC
ATGTGAGAGTAGAAATCACAGGGGTAGGTGGGCATCAATGGCGACGATGG
AATGGCAGGACCTAAAGAGGGAGAACAGAAAATGATGCTCACAAGCACGC
TCAAAAGCCCCACCCATGTGCTTCTTCTAGGTCTGATGTCACTCCCCCCC
CCCCCCCCCCCTCTCGGTTTCGTCAGCAGAACCCCCGAGCCATCAGCAAT
CAGCAGACCCTCCGAGCCACCAGCAAAGCGTCAGAAGCCAGAGGGGGATG
ACGATGATCGGGACAGCGGCGACAACAACGGCGAAAACAACGGCGATGGG
GATGGGGATGGGGATGGGGGTGGGGGTGGGGATTGGAATGGGGATGATGA
CCAGCCGGAGCACGACGACAGGGGAGAGGGCGAGGAGGAGCACGCAGAAA
CGCGACCCCAAAGTATTAATAGTACGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8054:3763..6291-

>mRNA_Ecto-sp13_S_contig8054.19389.1 ID=mRNA_Ecto-sp13_S_contig8054.19389.1|Name=mRNA_Ecto-sp13_S_contig8054.19389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1419bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8054:3763..6291- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAGGAGTGCTGTCAAAAGGGATGCGTGAAGCGTCCAAGCTACGG
CAGGTACGGGAGCACCAAGGCCGAGTACTGTGCGCAGCACGCAGAGGACA
ATATGATCGATGTGAGGAGCAAGCGGTGCGGCCACGCCGGTTGCACCACG
CGGCCGTCGTATGGCATCAACGGGACTACCAAGGCCCAGTTCTGTGCCAC
GCATGCGGCAGACGGTATGGTGAACGTCCGCTCCAAGAGGTGTAGCCACC
AAGGTTGCACCACCAGGCCAAGCTACGGCGTCGACGGCACCAAGAAGGCC
GAGTACTGCACGCGGCACGCGCTGGCCAATATGGTCGACGTCCGCAGCAA
GAGGTGCGGCCGCCAGGGGTGCAACACGTGGCCCAGCTACGGCGTAGAGG
GAAGCAACAGGGCGGTGTTCTGCGCGCGGCACGCGGATCCCCATATGGTG
GACGTCTGCAACAAGAGGTGCGGGACTCGCGGTTGCACGATCCGACCAAG
CCACGGCTTCGAGGGCAGCTCCGCCAAGCCCCAGCTGTGCCAGCGGCATG
CGGAGCCCGGTATGATCGACGTCCGAATAAAGAGGTGCGGTCACCGGGGT
TGCGAGCACCCGCCGACCTACGGCGCCCCGGGCTCCGCCGTTCCCGTGTT
TTGTCAACGGCACTCGCAAGTTGGGATGGTGCGCACACGGCTGGCCAAGT
TTCGGAGCACCCGTGCGCCGGCTCTTCATCCTCCTCGCCCGTCACCACCA
CCATCAACAACAACACCACCTCTGCAGCAGCGGCAGCAGAAGCCGCCCAT
CGTCGCTTCCGCCTTCCGGCCCTCTGCCTTCCCTGCTCCCGCTGCTGCTG
CTGCTGCGGCCGCTTTCTCTGCGGGCGGTGGAGCTGTGGGGGTGAAGGGC
CAACCGGCCAGGCTCGACGGCAGCGGTGGCGATGTCGGCGGTAGTGTTGG
CGGGGCGTGGCGCCCTGGCGGAGTCGGATCAGCGGCGGCGGGGGTCACGG
AAGGAATCTCAGCGGCGGGAGGGGTCGGAGTGGAAGTAGGAGCGGCGGCG
GCGATAGGAGGGGGAGGTAGCGGGGGAGAAGACGGCGGCAGCCCTGCCGC
CGCCGATGCGGATGGAGCCGGAGACCTGCTGCTGGCTCTAAGCGGCAAGA
CGACTGGGAGCTGGAGCAGAACCCCCGAGCCATCAGCAATCAGCAGACCC
TCCGAGCCACCAGCAAAGCGTCAGAAGCCAGAGGGGGATGACGATGATCG
GGACAGCGGCGACAACAACGGCGAAAACAACGGCGATGGGGATGGGGATG
GGGATGGGGGTGGGGGTGGGGATTGGAATGGGGATGATGACCAGCCGGAG
CACGACGACAGGGGAGAGGGCGAGGAGGAGCACGCAGAAACGCGACCCCA
AAGTATTAATAGTACGTAG
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