mRNA_Ecto-sp13_S_contig8045.19379.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8045.19379.1
Unique NamemRNA_Ecto-sp13_S_contig8045.19379.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8045.19379.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.930e-68
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 2 
Query:   50 EEEEVGDIEVVVETRLRVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTNKKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEESRGGEGVEAESEPEADL 442
            E EEVGD++VVVETRLRVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTNKKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEE RGGEGV AESEPEA L
Sbjct:  269 EGEEVGDVDVVVETRLRVSLRKARRLSRPFLKAMAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTNKKVINKVDMPFAKDAQDVPGRKKMKGKGVQRQPRPDGEEGRGGEGVTAESEPEAHL 399
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8045.19379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE1.930e-6895.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8045contigEcto-sp13_S_contig8045:2029..3932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1049
Hectar predicted targeting categorysignal peptide
Exons3
Cds size297
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.8089633-UTR-Ecto-sp13_S_contig8045:2028..21251681464077.8089633-UTR-Ecto-sp13_S_contig8045:2028..2125Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8045 2029..2125 +
1681464077.820438-UTR-Ecto-sp13_S_contig8045:2660..27111681464077.820438-UTR-Ecto-sp13_S_contig8045:2660..2711Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8045 2661..2711 +
1681464077.868231-UTR-Ecto-sp13_S_contig8045:3328..39321681464077.868231-UTR-Ecto-sp13_S_contig8045:3328..3932Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8045 3329..3932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.8373578-CDS-Ecto-sp13_S_contig8045:2711..28241681464077.8373578-CDS-Ecto-sp13_S_contig8045:2711..2824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8045 2712..2824 +
1681464077.8575847-CDS-Ecto-sp13_S_contig8045:3144..33281681464077.8575847-CDS-Ecto-sp13_S_contig8045:3144..3328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8045 3145..3328 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8045.19379.1prot_Ecto-sp13_S_contig8045.19379.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8045 2712..3328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8045.19379.1

>prot_Ecto-sp13_S_contig8045.19379.1 ID=prot_Ecto-sp13_S_contig8045.19379.1|Name=mRNA_Ecto-sp13_S_contig8045.19379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
MAPPLALLLVARLALGTVLARRIDPTLELLFGDDVMDLYSTNKKVINKVD
MPFAKDAQDVPGRKKMKGKGVQRQPRPDGEESRGGEGVEAESEPEADL*
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mRNA from alignment at Ecto-sp13_S_contig8045:2029..3932+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8045.19379.1 ID=mRNA_Ecto-sp13_S_contig8045.19379.1|Name=mRNA_Ecto-sp13_S_contig8045.19379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1904bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8045:2029..3932+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGGCGGGGGGGTTGTCGTGGCGACGAGAGACGGCGCCGAGGGGGAGG
AGGAGGAGGAGGTCGGCGATATCGAAGTTGTCGTTGAGACTCGGTTGGTG
AGTGAATGGACTCGGTGTGTTCCTACGCCGCGCCATCATGCCCATCCTTA
TCGAGCAGGCGGTTCCTCTGGCGGCAGCATCGAGCTCGTTCTTGTCGCTG
ACGATTCCTACTGTGGCACTAGACCTAGGGGAGCAGACGCACGTGTGATG
GGGTTGTCCTCCCCAAGTCATACCAACCTGTTGAAGCCTTGCATCATGGA
GAACTTGTCGGTGTCTTGCATGTGGCGGTATTCATACGTGCCGTTCTTGG
CACAAGCAATGCGCGACGACACGCGTTCCTTCCGGTCGCGGTGCTCCTCA
TGACCTCCTGTGCGCCGAAGCACCAAAGCACGCTTTTTCCGCCTTCCTTT
ACTGGATGATTTGTTGAGCCGGTTGGCCTTGCGTCTTCCCTTCTATTTGG
TGGCAACAGGCTTACCCGCCGGACGTTCCTCTATTGCTTTGCCTTTGGTT
TCGTGGTACATAACTGACTTACCGGTCTGCCTTCGTCCGTCCCTCCGTCC
ACACGTCCTTCTCTTGCGTCTGCCTATGGTAGCGAGTTTCCCTCAGAAAG
GCTAGGCGGTTGTCTCGGCCCTTCCTGAAGGCCATGGCGCCCCCGCTGGC
CTTGCTCCTGGTGGCGCGCCTTGCGCTGGGGACCGTGTTGGCGAGGAGGA
TAGACCCGACGCTCGAGCTTCTCTTTGGCGACGACGTGATGGACTTGTGA
GTGTATTTGTTTTCTCCCTCTCTCTCTGTCTCCACTCTCTCTATTGCTTG
GATGGTTGTTGTTGTTGTGCCTTTGTTGTCGCCATCCTTCACGTACACCG
CTTGGACGAGTTGTGTACCAGTACCCGCCCAAAAGTGCACCAGTACAAGG
AAAGGGGGGAGGTGCAACGAAGGCTTGACAAGGGAAGCATAGAGAGAGAA
GAGGCTATCTTGTGCGTTGCCCGTGCCTCTTGTTGTTTGTTTTGCACGCG
GTTTTCTTTTCCTCTCACGGCCGTCCCCCCTTGTCTTGGGTGTTGGCCGC
GCTGCCTGCCAACCAGGTACTCCACCAACAAGAAGGTGATCAACAAGGTC
GACATGCCGTTCGCCAAGGACGCACAAGACGTGCCGGGACGGAAGAAAAT
GAAGGGGAAGGGGGTGCAGCGACAACCGCGACCAGACGGCGAGGAGAGCA
GAGGAGGGGAGGGAGTCGAAGCGGAAAGCGAGCCGGAGGCCGACTTGTAG
TACACGTGGTACCGGTCCTGTCTCACAAAGGACGGGCTACTGATTTTGCG
TGCACGTCGTTGCAACCTCTCGTGGGTTTTCGCCGCTCGCGGTGTGCGAT
ACTACGGCTTTTTCCTGCTGCGAACTCCTGCTCTGTAGACTACCGGGGTA
CAGTCGCCGTCGTAAAGACGCGAACAGGAATTGATTCTGCTGTGGCGATA
GACCTGATTTCTGTTTGTTCGTCGGCGACAGTTGCACAACTGTCGTGTTG
TTACGAGTATCGGTCGCTCCTGAAGGCCGCCGAGGCGATCTTAGACTCTG
TGCCTGTTCACACGTGGAAACACCATCTCTGAATTGTCCATTGTTGCTTG
GCATGCACGGGATGACGTGCCCTTCCTTTGTCCAGAAGTTCATCATCAGG
TATCGCAGCAGTCGTGCCCCCCTCTGAGGAAATAAAGATTTGGGTTTGTC
AACACTGCCTTGGCCACCACACCCCGTCATTTGAGACCGTAGCCTAGTTT
CACCTCTTGCTCGCCGGGTTTTGAAGACTTTTACCGCTAGTTTATTGCCT
TGCGCGTCCAATATTGTACCCAAAGCTGCAAGGATCGACTTTCAGAACAG
AATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8045:2029..3932+

>mRNA_Ecto-sp13_S_contig8045.19379.1 ID=mRNA_Ecto-sp13_S_contig8045.19379.1|Name=mRNA_Ecto-sp13_S_contig8045.19379.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8045:2029..3932+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCCCCGCTGGCCTTGCTCCTGGTGGCGCGCCTTGCGCTGGGGAC
CGTGTTGGCGAGGAGGATAGACCCGACGCTCGAGCTTCTCTTTGGCGACG
ACGTGATGGACTTGTACTCCACCAACAAGAAGGTGATCAACAAGGTCGAC
ATGCCGTTCGCCAAGGACGCACAAGACGTGCCGGGACGGAAGAAAATGAA
GGGGAAGGGGGTGCAGCGACAACCGCGACCAGACGGCGAGGAGAGCAGAG
GAGGGGAGGGAGTCGAAGCGGAAAGCGAGCCGGAGGCCGACTTGTAG
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