mRNA_Ecto-sp13_S_contig8043.19377.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8043.19377.1
Unique NamemRNA_Ecto-sp13_S_contig8043.19377.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8043.19377.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI)

HSP 1 Score: 372 bits (955), Expect = 4.650e-125
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 1 
Query:    1 LDTGGFNTGLNFGYCTLLVMEELEVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEANELVTAYILTGNAGQGSDRIRWILGLIFVCLTLAMIRHDTRKWCRAKRTKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGQDIAFDVVLQNTG-EEGSVLDALTGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQ 615
            ++TGGFN GLNFGYCTLLVME+L+VIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEA+ELVTAYILTGNAGQG+DRIRWILGLIFVC+TLAMIRHDT+KW RA+  KARRNKCHCCCGFTFFTLIILNVLMWLGWASLG+ IAFDVVLQ T  EE SV+ ALTGQ+LALQEAALFSW+LHIIFLLTTLAGLYRWIFQ
Sbjct:  320 IETGGFNIGLNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGNDRIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
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BLAST of mRNA_Ecto-sp13_S_contig8043.19377.1 vs. uniprot
Match: A0A6H5JEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ3_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.350e-23
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   28 LNFGYCTLLVMEELEVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDH 180
            LNFGYCTLLVME+L+VIPR EVRSVNVQLVTYNGNQGSAFGSIN+GFTFDH
Sbjct:   59 LNFGYCTLLVMEDLDVIPRHEVRSVNVQLVTYNGNQGSAFGSINLGFTFDH 109
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BLAST of mRNA_Ecto-sp13_S_contig8043.19377.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.000e-15
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  451 IAFDVVLQNTGEEG-SVLDALTGQVLALQEAALFSWALHIIFLLTTLAGLYRWIFQ 615
            +AFDVVLQ+T  E  SVL ALTG +LALQEA LFSW+L+IIFLLTTLAGLY WIFQ
Sbjct:    1 MAFDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8043.19377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTQ4_ECTSI4.650e-12588.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEJ3_9PHAE1.350e-2392.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIW8_9PHAE7.000e-1576.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8043contigEcto-sp13_S_contig8043:2399..7112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size619
Hectar predicted targeting categoryother localisation
Exons7
Cds size618
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8043.19377.1prot_Ecto-sp13_S_contig8043.19377.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8043 2400..7112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.7052107-CDS-Ecto-sp13_S_contig8043:2399..25101681464077.7052107-CDS-Ecto-sp13_S_contig8043:2399..2510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 2400..2510 -
1681464077.717361-CDS-Ecto-sp13_S_contig8043:3094..31751681464077.717361-CDS-Ecto-sp13_S_contig8043:3094..3175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 3095..3175 -
1681464077.7264469-CDS-Ecto-sp13_S_contig8043:3500..35711681464077.7264469-CDS-Ecto-sp13_S_contig8043:3500..3571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 3501..3571 -
1681464077.73543-CDS-Ecto-sp13_S_contig8043:3951..40521681464077.73543-CDS-Ecto-sp13_S_contig8043:3951..4052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 3952..4052 -
1681464077.7479966-CDS-Ecto-sp13_S_contig8043:4594..46671681464077.7479966-CDS-Ecto-sp13_S_contig8043:4594..4667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 4595..4667 -
1681464077.764427-CDS-Ecto-sp13_S_contig8043:6195..63491681464077.764427-CDS-Ecto-sp13_S_contig8043:6195..6349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 6196..6349 -
1681464077.7762592-CDS-Ecto-sp13_S_contig8043:7085..71121681464077.7762592-CDS-Ecto-sp13_S_contig8043:7085..7112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8043 7086..7112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8043.19377.1

>prot_Ecto-sp13_S_contig8043.19377.1 ID=prot_Ecto-sp13_S_contig8043.19377.1|Name=mRNA_Ecto-sp13_S_contig8043.19377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
LDTGGFNTGLNFGYCTLLVMEELEVIPRDEVRSVNVQLVTYNGNQGSAFG
SINIGFTFDHGGEVEANELVTAYILTGNAGQGSDRIRWILGLIFVCLTLA
MIRHDTRKWCRAKRTKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGQD
IAFDVVLQNTGEEGSVLDALTGQVLALQEAALFSWALHIIFLLTTLAGLY
RWIFQA
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mRNA from alignment at Ecto-sp13_S_contig8043:2399..7112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8043.19377.1 ID=mRNA_Ecto-sp13_S_contig8043.19377.1|Name=mRNA_Ecto-sp13_S_contig8043.19377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:2399..7112- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACACCGGAGGCTTTAACACTGGGGTGAGTGAACGGCACACTCAACA
AGTGTTGCCACGTCTGCATTCGAGTAGAGAGGAGATTCGCTTTCTTGCGT
GGATGCGGGGCAGCAGGCCCTGAGCTTCGTGGGCAGCACTCAGAACAACC
CGCCGGCACCGACATTGAACTAGGGTATGTAACTTTCCGGTCCGCCGTGA
TTTTGACTTTCAGCTTCATTCTTAACGCCACATAGATTGTAGAATGTGTG
TCTCTTTTTTTTGGGGGGGGGGGACCCTGCGGACGCATTTTACTGAAGTA
CCCCTTTGGTAGGGAATCATAGCATCGTGTGTGCTCGAAGCTAACCAAGC
ACGTAGGAGCATACAGGAGGTTTCGACAATTCCAAGGCGGGGGGGGGAGG
GGGTACGTGCCGCAGCGATGAACAACAGTTGTTTATCGGATGGCTCGAAC
ATACACCTCGGTGAGTATTTTGCCAAAGCCCATTTCAGCCGAAGACATTG
GGCCTTGCCAGGTTCTGCAACGATGACTGCGCACACGGGCAGACATGGAG
CTTTGACACGGGGCTCACAGAAGCTCTGAGTTGTCTGTATACGTCTCTCT
GCATATTGTCACCCTCTTGCCTCTCTCCTCTACACGAGATGGAAGGCCAT
GTGATACCCGACTGGCGGAGAGATCCCCCGACTCACGCTTACCTTGCCAT
GTTGACGCACGATCGACCTGCTCGCAAATACACGTGCACCATGGTTCCCG
CCATGCATTACAGCTCAACTTTGGGTACTGCACCCTCTTGGTAATGGAAG
AGCTGGAGGTGATCCCTCGGGACGAGGTTCGCTCCGTGAATGTTCAGCTC
GTGACGTACAACGGGAACCAGGGGTCGGCCTTCGGCTCTATCAACATCGG
CTTCACTTTCGACCACGGTAAGCGGGATTGGTTCGTTCAGGTTGTGGTTT
GGCTTTTCTCGGCTCACATCAATGGCTTGAGGTCCATCGCGTTGCGCAGA
ATTTGGTTCGGCTGGTGATGAGGTCTCGTTGCTCTTGGTCTGTCAAATTG
GGCCCGCTTTCGGCAGCGTGATGTGGATACTGGTTGTTCTGGTAAACCGG
GGTATCTTTTCTCCGATACTGCCATACCCGGGTTCACGTGCGCCAAGAGC
ATTTTGGTTGTGGTCTTGTAATATTCCATATCTTTGGGTCGGTTCTGTCA
AAGCCGGGTTCACTCTCTCGCTCATTTTTTTATTTTTCGGTAGTGGTTCA
TATTTGCGCATGGTTCCATCAACATCGGACAACCTTTCGATCGGGTTAAC
CGATTTTCGGGTTAGTCTGGTCTGGCGCAAATTTACTCTGGTATTATCAA
TGACGGGATCAGAGTCAATCGTCGGCAAGTGGATTCTGGTTGAAGAGGTT
CTGTCTAATATCTGCCTTAGTTCCCTCAACATCGGGTTGAAGTGCAGTCC
CCTTTAATTGTGGTTGTCGTCGCTCAAGCTCCATGACCATCGCCCAAGGC
TTCCACACCGGTGCGGGTTTCGGTTGAACAGGGCTAGGCTTGTTTTTATC
TCTGACCCTGTCAACATGACACACGGCTCTGGCCTCGCCAAGCAAGGTGT
TTTTCGGACCAGCTGGTAGGAGCGCCTCCGCCGAGTTAGCGCTGCCTGAA
ACATTACCATTTCATCAATACTGTAGAGCGTTGGAGATGTCGTTCGGCGT
TGGTGTCTCTTGGTTGCTGAAACGTGTGCTGTAGTGCTACTTCTCGCTGT
TACCGGTGTACAGAGGTAGTGCGCTGTAGGAAGTCAAGATGGCGAAATTA
GTTAGTGTTCTATCTCACGAGTTTCGCGTCCGAAAGTACCGAGGTTTGCT
TTGGTGGTGATTTGCGTAGTATCAACGTGGGCGTGGAGGACTCACCAACG
CATGATCTCGTCAAAGTTGTATGGTTCGGAGGTTGAGTTTTGCTGTTTTT
TGGTCCGAAATTACCAGGAAGCACTGTCAAGTTCGCTCCCGTGTTTCAAA
TTTTGTTCTGCTAAGGGGGGCACAAGATCCTTTGGAACCATTACGGCAGA
AATCAGGTTCCGGTCTTCGAAAACACGGAGAGACAAACAGCTCGTTCGCA
TGCTATTTTAGCATACTTTTGTCGGCAGACATTGAGATTATTTTCCGCCA
TGTATGCGGATCTCGTTGACGGGACCGAACTGACGGTTTCGCGGTGGATT
GAACGAAATCGCGTGAGTAGTCTTTGGGGGAACACAAGCGTACAGACGTC
AGAGCAGCGTTCAAGTGAGGATAAGACGAAACAACGAACATCGACAGCAG
CAGCAGCATCAGCAGCAAACACCCGCGACAAACACAACAAAAACACATAT
TAGTAACACCACCACCACTATGAACACCACCACCAACAAGCTCTCGACAC
CTTTTTTACGGTCTTATGTTCTCTGGTTCGTTTGTACCGCCGCAGGGGGT
GAAGTAGAGGCGAACGAGCTCGTGACGGCTTACATTCTGACGGGAAACGC
AGGGCAGGGGAGTGACAGGTACAGCATGAGACGCAGATTTGACAATAGAG
GCAGGGGTAGTGGCAGCCGCCGTAGTAGAAACTTCGACAGCGAGAGCGGG
AGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAACAACAACAAGATCAC
TCTCGTAATCAAAGTTGTATCCATATCGGCAGGTTCACTCCATCCCTCAC
ATGAAGCTTTCTGTCACTGGCTTTTGGACCCTTCAGCTCGAGTCTTGCCC
TGTGTTATGGATGAAATCCGCAACCGTGCCCGTGTACCACATCCCGTGTA
ACGCACGTGGCAAAACTTCTGCTGCCCCCCTCACCCGTGTTTTCACTTGC
CACTCTCATCCTCCCCCCCATTATTTCGCTCTTTGTCGCTCACTCATATT
CGCTGTCACCCATCGTCTCTCTCTCACGCTGACATGTGAATGAAAACACA
GAGATGTTTCCCTCTCCGTCTCCCTTTCGGTTTCTCCCTCGCCCCCTCTG
TCTACCATTCTCGCCCATCTCTCTGTCGCGCGCCCACCGTGTACGCACGC
GTACACCCAGGATCCGGTGGATCCTGGGGTTGATCTTTGTGTGCCTGACA
CTGGCCATGATCCGGCACGACACGAGAAAGTGGTGTCGAGCCAAACGTAC
CAAGGCCAGGCGTGAGTTCGGGTTCCTTGTCTGTAGCATAGCGGTAGCTA
CTGTAAGTTAGTGTCGGGGTTCAGCAGTCCTGGTGCTTGTCCTCGTTGAC
GTTAACAGCGGTTGACGCGCCTACGAGTTATCGACACACGGCGATCCCTT
GTTGTTGTTCCGTTGGATCACAACCAGATGCAGTTGTCCCCATATTGCAC
GGCACGTAAGCGGCGAAAGCTGTACCGTGACCGCATTGTTCGTCCATCCA
GATTCAGCGTTGTCCCCGCATGATGAACACCACGCGCTGCGGGGCGTTTG
ACCGCTAGAAGCCCGGCTCCCCCGCCGGGCTTGTGCCAGCACTTCAAGCT
CTGCAAACCCCTGTTCCGCCCTCTCCGTTTTGGGTCCGCAGGAAACAAGT
GCCACTGCTGCTGCGGCTTCACGTTTTTCACTCTGATCATCCTCAACGTT
CTGATGTGGCTGGTGAGTTGCGAGGCAGGCGCCCCCACCCGTTGCTTCGT
TTTTGAAAGCGCAACGCTCTTGTCGCCTGTGGTTACACTTGACTTCGTGT
TTGCTCTTGCGTCTTTCCCGCTTTTCCTTGCCGCATGAGTTGCAGCAGTT
TCATGACATCCATCCCTTGCGCGCCACTCCCCGCAACGTTCATCATAGCC
GTAGATCCTTCCTGAAACAACCTTCGAATTTCGTCTACCCCGGATTTTCC
TTCCATGCCTGATGTCTATCTACTACCCGGGGTTTTCCTGACAGCCCGAC
CAACTTTGCCCCGTATCCTCACGATCTCTTCGGGCAGGGCTGGGCATCTC
TGGGACAGGACATAGCGTTCGATGTGGTTCTTCAAAACACGGGCGAAGAG
GGTTCGGTACTAGACGCGGTATGTTTGGGAAATTTCGCGTGCAGGTTCAC
CGGCGCCACCATTTTCAATGGAGCAACCTGCTGAAACTCTCATTTTTTTA
GCCCTGGCAAAACGTGGGATTTGTTCGCGCTGCTCTCTAACACGACGCGG
CCTAGCTTTGGGGTGTTTGTTCGACAAGGCTGATGTTCTCTCGGAGTCCT
CGAGGATATTGAGCTCTCTCTTGTTATATGTAGCCTCGTTCAACGATACC
GTTCTCGTCGATCCCTCCGCCCTCCTCCACTGAACAAACGTATCCCCTAA
AAAGGTGACTGCGTTACCGGCGATACGTAGGCAATCATCGAAACATGGTA
GCGAATTAAAGAGCGCGTCCATTTTGTTTCCCAAAAGGCTAGCCCAACGA
GCGGGTTTGCCCGCAGCTCTCCAATCTGGAAGTGGGGCAACCAGCCGAAT
GCAGCTCAGTGCGTGCGCAACCGACAATATTTGGCTTGCATTGACACCGT
TTTTTGTCCTCAGAGACCGATCGATCGCCCTTGAACCCGAAATCCTATCA
TTTTGCCGCTTGTCCGCGCGCTACGTCCAATATACGACGATGATCGACTC
AGCTGACTGGGCAGGTTCTGGCTCTCCAAGAAGCGGCTCTGTTTTCGTGG
GCACTCCACATCATTTTCCTCCTCACGACCTTGGCCGGACTCTACCGCTG
GATATTCCAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8043:2399..7112-

>mRNA_Ecto-sp13_S_contig8043.19377.1 ID=mRNA_Ecto-sp13_S_contig8043.19377.1|Name=mRNA_Ecto-sp13_S_contig8043.19377.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:2399..7112- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACACCGGAGGCTTTAACACTGGGCTCAACTTTGGGTACTGCACCCT
CTTGGTAATGGAAGAGCTGGAGGTGATCCCTCGGGACGAGGTTCGCTCCG
TGAATGTTCAGCTCGTGACGTACAACGGGAACCAGGGGTCGGCCTTCGGC
TCTATCAACATCGGCTTCACTTTCGACCACGGGGGTGAAGTAGAGGCGAA
CGAGCTCGTGACGGCTTACATTCTGACGGGAAACGCAGGGCAGGGGAGTG
ACAGGATCCGGTGGATCCTGGGGTTGATCTTTGTGTGCCTGACACTGGCC
ATGATCCGGCACGACACGAGAAAGTGGTGTCGAGCCAAACGTACCAAGGC
CAGGCGAAACAAGTGCCACTGCTGCTGCGGCTTCACGTTTTTCACTCTGA
TCATCCTCAACGTTCTGATGTGGCTGGGCTGGGCATCTCTGGGACAGGAC
ATAGCGTTCGATGTGGTTCTTCAAAACACGGGCGAAGAGGGTTCGGTACT
AGACGCGCTGACTGGGCAGGTTCTGGCTCTCCAAGAAGCGGCTCTGTTTT
CGTGGGCACTCCACATCATTTTCCTCCTCACGACCTTGGCCGGACTCTAC
CGCTGGATATTCCAGGCA
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