mRNA_Ecto-sp13_S_contig8043.19376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 207 bits (527), Expect = 6.390e-65 Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
MLTFHKRMSIVTDTLSRASTHL+HFLFVFFLVILAF+AL WLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV S
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVAS 116
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 199 bits (505), Expect = 1.020e-63 Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAF+AL WLLVGSSTKEFSTL +AW SV RISLGESENFYPQILDAQPTVGPV VVLYQVLGVVLLLNVVIAI LEAYRGVVS
Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVS 116
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 195 bits (495), Expect = 6.300e-62 Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAY 333
MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAF+AL WLLVGSSTKEFSTLEDAW+SV RISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLE +
Sbjct: 32 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 114 bits (286), Expect = 3.570e-30 Identity = 67/105 (63.81%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDA 237
M TFHKRMSIV DTLSRASTHL FLFVFFL V+LAF+AL +LLVGSSTKE STLEDAWRSVIRIS GES+N YPQILDA
Sbjct: 57 MFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 90.5 bits (223), Expect = 8.120e-19 Identity = 47/114 (41.23%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV 342
ML FH R+S+VTD L+ ++ HL HF +FF+V+ +S L W++ G S+ F+T ++ ++ RI+LGE +N YP +++ +++V YQ L +LLLN+VI+ILL+A++ V
Sbjct: 242 MLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMV 355
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A8J5X0G5_DIALT (PKD_channel domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X0G5_DIALT) HSP 1 Score: 69.3 bits (168), Expect = 2.270e-11 Identity = 41/113 (36.28%), Postives = 69/113 (61.06%), Query Frame = 1
Query: 4 LTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGV 342
L FH++ S+VT TL RA L HFL VF +V++ ++ + + ++G + ++TL A S+ + + + + I+D P VGPV Y +L ++L+NV++AILL+AY V
Sbjct: 540 LAFHQQFSLVTATLLRAGASLAHFLVVFAIVLVMYAFVGFNMLGHKLERYNTLGKAINSMCSMLVFDDTVSFADIMDVAPLVGPVFYWSYFILSSLMLINVLLAILLDAYASV 652
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A7S0MWE4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MWE4_9CRYP) HSP 1 Score: 58.2 bits (139), Expect = 1.780e-7 Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 1
Query: 10 FHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSV----IRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAY 333
F R++I+ TLS A+ L HF+ +F V +A++ +A +L G+ FSTL +RS+ I + +G + +Y QI PT+ V + + +L V+L+N+++AIL++AY
Sbjct: 416 FQPRLAIINKTLSIAAIDLLHFVIMFVTVFVAYAVMANILFGTEINNFSTL---YRSITTLFIWVLVGGAPTYYAQITHVAPTMAFVFYLTFMLLVFVVLMNLLLAILVDAY 524
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: UPI0009E1FD1A (location of vulva defective 1-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1FD1A) HSP 1 Score: 54.7 bits (130), Expect = 3.190e-6 Identity = 38/116 (32.76%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
++ F++ + + TL+RA+ L + VF +LA++ LA+LL+ S+ + +S+ ++ R+V+++ LG FY +I +GP+ V LY + +LLN+ +AIL E+Y VV
Sbjct: 2097 LIRFNRHVCQMMGTLARAARPLVSYSVVFVSAVLAYTLLAFLLLSSTMRPYSSFFNSLRAVLQMLLGGKIFFY-EIKSVNSLLGPLFVFLYMFTMMFILLNMFLAILNESYWEVVD 2211
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A6G0R7K6_9STRA (5'-nucleotidase n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0R7K6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 4.250e-6 Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 7 TFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVVS 348
T KRMS++ L RA+ L F F + I AF+ + LL G + FS+L A ++++ GE + Y + D+ GP+ +LY +L +++L+NV +AIL +AY ++
Sbjct: 764 TVSKRMSLLLRMLGRAARDLAWFFVCFLVCICAFAQIGLLLFGLDVRGFSSLGSAIVTLLQAVAGELD--YAGMADSHRVAGPIFYILYYLLLLLILVNVFLAILNDAYMQTIT 875
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Match: A0A553QYP4_9TELE (PLAT domain-containing protein n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553QYP4_9TELE) HSP 1 Score: 53.9 bits (128), Expect = 5.770e-6 Identity = 24/88 (27.27%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVV 264
+L + +++++T +L RA + + F+FV F++++A+S L+ G + TL DA+RS+ + +G Y +++D P +G +++
Sbjct: 951 LLRLNPKLNLITSSLQRAWSDMSSFVFVLFIILIAYSITCNLIFGWKLSSYKTLPDAFRSIFSLQMGIFN--YDEVMDTDPELGAIII 1036 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8043.19376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8043.19376.1 >prot_Ecto-sp13_S_contig8043.19376.1 ID=prot_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFSALAWLLVGSSTKEback to top mRNA from alignment at Ecto-sp13_S_contig8043:3..1761- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8043.19376.1 ID=mRNA_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1759bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:3..1761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8043:3..1761- >mRNA_Ecto-sp13_S_contig8043.19376.1 ID=mRNA_Ecto-sp13_S_contig8043.19376.1|Name=mRNA_Ecto-sp13_S_contig8043.19376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8043:3..1761- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |