mRNA_Ecto-sp13_S_contig8042.19375.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8042.19375.1
Unique NamemRNA_Ecto-sp13_S_contig8042.19375.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 5.670e-156
Identity = 267/359 (74.37%), Postives = 277/359 (77.16%), Query Frame = 1 
Query:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSCDSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQ--DDQAHTGSSTDCSNTXXXXXXXXXXXXXXXXXXSNGSIANLHNMALGTDAAWPSRRPTNSNDGRTATSHSXXXXXXXXXXXX---YXSAATRGSSGRSLGSTAWGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGSWGDD 1062
            MR  HHAIREVVRFG VDVQQVGGRR MGGLSLASTVDRRK DGVD RRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDK G  AVEDDG+LSCDSG DVSSV+S  ARNKG  SGGGIQGS+ASMHTAAFGADVAWPSRRPTQ  DDQA  GSS+  S +                        +L                 NSN GRTATSHS   XXXXXXXXX   Y +AATRGSS  SLGS AWGGRRWRS+HQE ED++AS ASPATRGAR V E  LP W SVASA FAGSWGDD
Sbjct:    1 MRLPHHAIREVVRFGTVDVQQVGGRRCMGGLSLASTVDRRKRDGVDARRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKTGVIAVEDDGNLSCDSGGDVSSVISGVARNKGGGSGGGIQGSVASMHTAAFGADVAWPSRRPTQTQDDQAQRGSSSGGSGSD-----------------------DLXXXXXXXXXXXXXXXXXNSNGGRTATSHSSHSXXXXXXXXXGDEYGNAATRGSSEGSLGSIAWGGRRWRSHHQETEDKNASSASPATRGARGVNEEALPAWPSVASATFAGSWGDD 336
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BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 3.980e-138
Identity = 234/354 (66.10%), Postives = 243/354 (68.64%), Query Frame = 1 
Query:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSCDSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQDDQAHTGSSTDCSNTXXXXXXXXXXXXXXXXXXSNGSIANLHNMALGTDAAWPSRRPTNSNDGRTATSHSXXXXXXXXXXXXYXSAATRGSSGRSLGSTAWGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGSWGDD 1062
            MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRK DGVD RRPTAAMEL+RAAEVQKCADKGWKSALICLGNMRKGGVAPGS+AYNVALKACAGAGEWGRAAALVEDMQGSGAIPDE IVAEIRAAGD +    + D+ DLSCDSG DVSSVLS AARNKG +SGGGIQ                                                                        DAAWPSRRPTNSN+  T TS              + SAATRGSSGRSLGS AWGGRRWRS H ENEDE+AS ASPATRG R VKEGG P WSSVASAPFAGSWGDD
Sbjct:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKKDGVDARRPTAAMELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVMELGDNDDLSCDSGGDVSSVLSGAARNKGGESGGGIQ------------------------------------------------------------------------DAAWPSRRPTNSNNS-TGTSGGGD----------FGSAATRGSSGRSLGSIAWGGRRWRSQHDENEDENASSASPATRGVRVVKEGGSPAWSSVASAPFAGSWGDD 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGB2_9PHAE5.670e-15674.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7H2_ECTSI3.980e-13866.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8042contigEcto-sp13_S_contig8042:2474..6357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1065
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000260.1
Cds size1065
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.5250185-CDS-Ecto-sp13_S_contig8042:2473..25211681464077.5250185-CDS-Ecto-sp13_S_contig8042:2473..2521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8042 2474..2521 +
1681464077.544228-CDS-Ecto-sp13_S_contig8042:4302..44581681464077.544228-CDS-Ecto-sp13_S_contig8042:4302..4458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8042 4303..4458 +
1681464077.5565689-CDS-Ecto-sp13_S_contig8042:5496..63571681464077.5565689-CDS-Ecto-sp13_S_contig8042:5496..6357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8042 5497..6357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8042.19375.1prot_Ecto-sp13_S_contig8042.19375.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8042 2474..6357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8042.19375.1

>prot_Ecto-sp13_S_contig8042.19375.1 ID=prot_Ecto-sp13_S_contig8042.19375.1|Name=mRNA_Ecto-sp13_S_contig8042.19375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRP
TAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACA
GAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSC
DSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQ
DDQAHTGSSTDCSNTSSSSSSSSGGGGGGGGGGSNGSIANLHNMALGTDA
AWPSRRPTNSNDGRTATSHSSNNSTGNSGGGDYGSAATRGSSGRSLGSTA
WGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGS
WGDD*
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mRNA from alignment at Ecto-sp13_S_contig8042:2474..6357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8042.19375.1 ID=mRNA_Ecto-sp13_S_contig8042.19375.1|Name=mRNA_Ecto-sp13_S_contig8042.19375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3884bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8042:2474..6357+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACCTCTCCATCACGCCATTCGCGAGGTGGTGCGTTTCGGGAAGGT
AAGAGAGAGAGGCAGCAGAGAGAGAGAGACAAAAAATTGGTAGCTCCCTC
TGGATGTTTGTGAACGAAAGTTTCATGTTTTGCTTTGCCTCGTCATCGAT
CTGTTCAGATACGTCACCAGTCTGTAGGGGCTGATGGTCCCTGTGAGTCC
TGTGACCTTGTTGGAGGGGGGGCGGAGCCTCAATCTGACGGAGGACGTTG
CCCCGATACTACGATGCTATGCTCGTGCTCCCCGAGTATTGGCTGTTTGC
GCTACACCGGCATTCCTCGGGAAGATTCGCTCTCAACTCTGAACTCTGAA
ATATCTGTGATGGATGCGCTACAACAGTAGATATACAGCAGCATCCACTC
ACGCCGTTGACAAGGGACAGCGGGAGGTGTGGGTACGTAGTGTGTGTTGA
GAACGAGGGGCGGGAGGGATGATTGGGGTCCCGAAGGTGGGGATCCATGA
CGCATCTCATGCGTGCGGCTCTCGAAGAGAGAGGAAGCAGAAATATTGTA
GTTGGCTCTGTGGTTTCATCCGAAATGGGAAAAAACAGAAACCAAAAACC
TTCAAGTTGCGCCAAGTCAGCCGTCACACAATCCATCAACCAATCCAGCT
GCCGTGCTGTCGTAGTTGATATGACATGAGATACCATACCCCCCGGACCG
ATTTCATACACAGGCTCATTGTACATGTGCATACTTGCTATGATTACAGA
AAACGTAATGACCGCACCCTGAATAACGGTGGTGGAGCCGTCCGCGCGTT
GAAAAGAGCGTTCCGACAAATGTACCCGCGTGATTTGGCACTCTTCTTCG
TTTGTGACGGTGGCAGATTGTTGTTGTTGGTGTCTTGACATTGATAAACC
GTTCCGGTCTCCGCTCAGTACCTTCTAATGTCCGTACTGGTCCACCTGAC
GCGGACGCCTTCCGTGGTCACAAGCCAACTGCCCCACCGAATGGGGCGGT
ACACCTTTCAAAGAAAAAAATATATATATGGGCGGATGTGGAAAAGAGGG
TTTCGTCCTCGACAGACGTTGGGGAGTTGCACCCTTTATGAAGGTTGTCT
CCACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGCTGTACCCTGTTCGCATCCAGCAG
TCGAGGTACCAGTATCTGTGTTGTAGTATACCGGATTGCACCCAGAAAAC
TCACCGGCACGATACCGGACCCAGGCACTCTTCAAAACAGAAATATCTAG
GTTTTAGTATTGCAGTGGACACTCGTGCCCGGAGACATGACCGGCGTTGT
ACCGGCACTGTGTGTTTAACCGGCCGAAACAAGGACCTCTTGGATTATCT
CTGCCTTGTCATTCCATGACATCCCTTAGCATTCCTTGACATTTCATGAC
CTTCCTTGACATCCCTTGTCATCCCGTCACATTCCTTGACATTCCTTGAA
ATTCCTTGGCATCCCTTGACATGGCCAAGGTGGATGTTCAGCAGGTTGGT
GGGCGACGGCGTATGGGAGGCCTCTCGCTCGCATCGACCGTAGACAGGAG
GAAGAGCGACGGCGTTGATACCAGGCGGCCGACAGCGGCGATGGAGCTAA
GGCGGGCCGCGGAGGTGCAGAAGTGCGCCGATAAGGTGTGTACGATTCGC
TGTACTTCTACGTAGGTGGTCTACGGTAGATAACACCCCCTAGATAGGAC
TCCGGTCTTCGTTGGACGGAAGACTTTGAGCCTGCCTGGTGTATCATCTC
ATGGGATCCACTGATGTTTGCTATTTTTCGTCAGCGTTGTACATCAGTCC
TATCACTATCGTGACTAGGTCTTGGCACGGTAGATACGATTCTGTGTTTT
TACGTTTTTTATCTTACAGTTGTTTATCTGTATCTGACGTCGGCAACCAA
GCCTAGATTTGCCAAGTGCTCTAAAGGCCGGCCTACCACTCGACGCCACA
CGGACGGAAGAGTCAGCGGCAGCGGCGCAAAAACGATAACAATTAGCTCC
TACCCGATACGCTCTCATCCCAACGGAAGAAGGGACCACCTCATGGCTGT
GGAGCAAGAGATGCGCATACGTTGGCTCAACCTCTCGGTCTGACTTTACG
TTCTCGCGTTACCACAGCGATACGTTCCGCGCGCATTATTTCGAAGATAG
CGAATAATGTCGTATTTTTTGTGCACAACGGTCCGGCTCTCGGCGCTAAC
CAGCCTCTGTAGCTAGTTACGGTTGTGCAGGTAGAACGCGGCTAGAAATT
CTGACGACCGGGTGGCATTCGTTTTTGCATGACGTCATGGTCGTTTTTTG
TGGGCCGAACGTCCGACGTGTGTCGACGGCAACGCCCAACGTTCCAGGGG
ATAACAAATGAAACACAATGATACACCGCCTACGTCCTGGTGTTCATGCA
CGCAATGTTTCTGTCCCCCTTGAGATTTGGGGTAGCGAGTTCGTTCAAAG
CATCTGAACCTGTAGCAATGATCATAAAATGAGATTATCACCACCAACCC
TTCACGTTTCAAGACCCGTACGTTTAGTGGAACAATGTTCCATTGCCTCG
ATGCCCCCTTAAGACGCTGATGCCGTGCGCTCTCAGTTACCTCCCGGAAG
TCCTCTCCAACCCTGCCCAACACGTTGCCCCTGCTTGTGTGACAACCATT
GTACCGCCGTCGCCTGTTACCAGGGGTGGAAGAGCGCGCTCATCTGTCTC
GGAAATATGCGGAAGGGAGGCGTTGCTCCCGGGTCTGCGGCGTATAACGT
CGCCCTGAAGGCGTGCGCTGGTGCGGGGGAGTGGGGCCGCGCGGCCGCGC
TCGTGGAGGACATGCAGGGCTCCGGCGCAATCCCTGACGAGGGCATAGTA
GCGGAGATCAGGGCGGCTGGCGACAAAATTGGTGCGACGGCGGTTGAGGA
CGACGGCGACTTGTCGTGCGATTCTGGTGTTGACGTTTCGTCTGTTCTCT
CCAGTGCCGCGAGAAACAAGGGGAGGGACAGCGGTGGAGGCATCCAAGGC
TCGATTGCGAGCATGCACACCGCGGCGTTCGGGGCGGATGTCGCGTGGCC
CAGCCGGCGACCTACACAGGATGATCAGGCTCACACAGGCAGCAGCACTG
ACTGTAGCAATACGAGCAGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGGAGCAATGGCTCGATCGCCAACCTGCACAACAT
GGCACTCGGGACAGATGCCGCGTGGCCCTCCCGGCGCCCGACGAACAGCA
ACGACGGTCGCACCGCCACCAGCCACAGCAGCAACAACAGCACGGGTAAC
AGCGGCGGCGGCGACTATGGCAGCGCTGCCACGAGGGGCTCGTCAGGGAG
ATCTTTGGGCAGCACCGCGTGGGGCGGGCGTCGATGGCGCAGCAATCACC
AGGAAAACGAAGATGAACACGCCTCCTTGGCGTCTCCTGCGACAAGGGGG
GCACGTCGTGTCAAGGAGGGGGGGCTACCGACGTGGTCATCCGTGGCATC
GGCCCCCTTCGCGGGGTCTTGGGGCGACGATTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8042:2474..6357+

>mRNA_Ecto-sp13_S_contig8042.19375.1 ID=mRNA_Ecto-sp13_S_contig8042.19375.1|Name=mRNA_Ecto-sp13_S_contig8042.19375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8042:2474..6357+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGACCTCTCCATCACGCCATTCGCGAGGTGGTGCGTTTCGGGAAGGT
GGATGTTCAGCAGGTTGGTGGGCGACGGCGTATGGGAGGCCTCTCGCTCG
CATCGACCGTAGACAGGAGGAAGAGCGACGGCGTTGATACCAGGCGGCCG
ACAGCGGCGATGGAGCTAAGGCGGGCCGCGGAGGTGCAGAAGTGCGCCGA
TAAGGGGTGGAAGAGCGCGCTCATCTGTCTCGGAAATATGCGGAAGGGAG
GCGTTGCTCCCGGGTCTGCGGCGTATAACGTCGCCCTGAAGGCGTGCGCT
GGTGCGGGGGAGTGGGGCCGCGCGGCCGCGCTCGTGGAGGACATGCAGGG
CTCCGGCGCAATCCCTGACGAGGGCATAGTAGCGGAGATCAGGGCGGCTG
GCGACAAAATTGGTGCGACGGCGGTTGAGGACGACGGCGACTTGTCGTGC
GATTCTGGTGTTGACGTTTCGTCTGTTCTCTCCAGTGCCGCGAGAAACAA
GGGGAGGGACAGCGGTGGAGGCATCCAAGGCTCGATTGCGAGCATGCACA
CCGCGGCGTTCGGGGCGGATGTCGCGTGGCCCAGCCGGCGACCTACACAG
GATGATCAGGCTCACACAGGCAGCAGCACTGACTGTAGCAATACGAGCAG
CAGCAGCAGCAGCAGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGGA
GCAATGGCTCGATCGCCAACCTGCACAACATGGCACTCGGGACAGATGCC
GCGTGGCCCTCCCGGCGCCCGACGAACAGCAACGACGGTCGCACCGCCAC
CAGCCACAGCAGCAACAACAGCACGGGTAACAGCGGCGGCGGCGACTATG
GCAGCGCTGCCACGAGGGGCTCGTCAGGGAGATCTTTGGGCAGCACCGCG
TGGGGCGGGCGTCGATGGCGCAGCAATCACCAGGAAAACGAAGATGAACA
CGCCTCCTTGGCGTCTCCTGCGACAAGGGGGGCACGTCGTGTCAAGGAGG
GGGGGCTACCGACGTGGTCATCCGTGGCATCGGCCCCCTTCGCGGGGTCT
TGGGGCGACGATTGA
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