prot_Ecto-sp13_S_contig8042.19375.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8042.19375.1
Unique Nameprot_Ecto-sp13_S_contig8042.19375.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length355
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Match: A0A6H5KGB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB2_9PHAE)

HSP 1 Score: 450 bits (1157), Expect = 5.670e-156
Identity = 267/359 (74.37%), Postives = 277/359 (77.16%), Query Frame = 0 
Query:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSCDSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQ--DDQAHTGSSTDCSNTXXXXXXXXXXXXXXXXXXSNGSIANLHNMALGTDAAWPSRRPTNSNDGRTATSHSXXXXXXXXXXXX---YXSAATRGSSGRSLGSTAWGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGSWGDD 354
            MR  HHAIREVVRFG VDVQQVGGRR MGGLSLASTVDRRK DGVD RRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDK G  AVEDDG+LSCDSG DVSSV+S  ARNKG  SGGGIQGS+ASMHTAAFGADVAWPSRRPTQ  DDQA  GSS+  S +                        +L                 NSN GRTATSHS   XXXXXXXXX   Y +AATRGSS  SLGS AWGGRRWRS+HQE ED++AS ASPATRGAR V E  LP W SVASA FAGSWGDD
Sbjct:    1 MRLPHHAIREVVRFGTVDVQQVGGRRCMGGLSLASTVDRRKRDGVDARRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKTGVIAVEDDGNLSCDSGGDVSSVISGVARNKGGGSGGGIQGSVASMHTAAFGADVAWPSRRPTQTQDDQAQRGSSSGGSGSD-----------------------DLXXXXXXXXXXXXXXXXXNSNGGRTATSHSSHSXXXXXXXXXGDEYGNAATRGSSEGSLGSIAWGGRRWRSHHQETEDKNASSASPATRGARGVNEEALPAWPSVASATFAGSWGDD 336
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BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Match: D7G7H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7H2_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 3.980e-138
Identity = 234/354 (66.10%), Postives = 243/354 (68.64%), Query Frame = 0 
Query:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRPTAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSCDSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQDDQAHTGSSTDCSNTXXXXXXXXXXXXXXXXXXSNGSIANLHNMALGTDAAWPSRRPTNSNDGRTATSHSXXXXXXXXXXXXYXSAATRGSSGRSLGSTAWGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGSWGDD 354
            MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRK DGVD RRPTAAMEL+RAAEVQKCADKGWKSALICLGNMRKGGVAPGS+AYNVALKACAGAGEWGRAAALVEDMQGSGAIPDE IVAEIRAAGD +    + D+ DLSCDSG DVSSVLS AARNKG +SGGGIQ                                                                        DAAWPSRRPTNSN+  T TS              + SAATRGSSGRSLGS AWGGRRWRS H ENEDE+AS ASPATRG R VKEGG P WSSVASAPFAGSWGDD
Sbjct:    1 MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKKDGVDARRPTAAMELKRAAEVQKCADKGWKSALICLGNMRKGGVAPGSSAYNVALKACAGAGEWGRAAALVEDMQGSGAIPDETIVAEIRAAGDNVVVMELGDNDDLSCDSGGDVSSVLSGAARNKGGESGGGIQ------------------------------------------------------------------------DAAWPSRRPTNSNNS-TGTSGGGD----------FGSAATRGSSGRSLGSIAWGGRRWRSQHDENEDENASSASPATRGVRVVKEGGSPAWSSVASAPFAGSWGDD 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8042.19375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGB2_9PHAE5.670e-15674.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7H2_ECTSI3.980e-13866.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 91..124
e-value: 7.8E-4
score: 17.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 88..122
score: 9.35
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 57..171
e-value: 4.5E-8
score: 34.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8042contigEcto-sp13_S_contig8042:2474..6357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8042.19375.1mRNA_Ecto-sp13_S_contig8042.19375.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8042 2474..6357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8042.19375.1 ID=prot_Ecto-sp13_S_contig8042.19375.1|Name=mRNA_Ecto-sp13_S_contig8042.19375.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
MRPLHHAIREVVRFGKVDVQQVGGRRRMGGLSLASTVDRRKSDGVDTRRP
TAAMELRRAAEVQKCADKGWKSALICLGNMRKGGVAPGSAAYNVALKACA
GAGEWGRAAALVEDMQGSGAIPDEGIVAEIRAAGDKIGATAVEDDGDLSC
DSGVDVSSVLSSAARNKGRDSGGGIQGSIASMHTAAFGADVAWPSRRPTQ
DDQAHTGSSTDCSNTSSSSSSSSGGGGGGGGGGSNGSIANLHNMALGTDA
AWPSRRPTNSNDGRTATSHSSNNSTGNSGGGDYGSAATRGSSGRSLGSTA
WGGRRWRSNHQENEDEHASLASPATRGARRVKEGGLPTWSSVASAPFAGS
WGDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf