mRNA_Ecto-sp13_S_contig8040.19372.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8040.19372.1
Unique NamemRNA_Ecto-sp13_S_contig8040.19372.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8040.19372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8040contigEcto-sp13_S_contig8040:4797..5342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.2483594-UTR-Ecto-sp13_S_contig8040:4796..48801681464077.2483594-UTR-Ecto-sp13_S_contig8040:4796..4880Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8040 4797..4880 -
1681464077.283807-UTR-Ecto-sp13_S_contig8040:5258..53421681464077.283807-UTR-Ecto-sp13_S_contig8040:5258..5342Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8040 5259..5342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.2634368-CDS-Ecto-sp13_S_contig8040:4880..50511681464077.2634368-CDS-Ecto-sp13_S_contig8040:4880..5051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8040 4881..5051 -
1681464077.274476-CDS-Ecto-sp13_S_contig8040:5240..52581681464077.274476-CDS-Ecto-sp13_S_contig8040:5240..5258Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8040 5241..5258 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8040.19372.1prot_Ecto-sp13_S_contig8040.19372.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8040 4881..5258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8040.19372.1

>prot_Ecto-sp13_S_contig8040.19372.1 ID=prot_Ecto-sp13_S_contig8040.19372.1|Name=mRNA_Ecto-sp13_S_contig8040.19372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MARAEESSSSCGKAGMLTPQTRQPAPDLPLYLGSLLIFLFHAYDSAYFAH
ESAFLGVPSVVS*
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mRNA from alignment at Ecto-sp13_S_contig8040:4797..5342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8040.19372.1 ID=mRNA_Ecto-sp13_S_contig8040.19372.1|Name=mRNA_Ecto-sp13_S_contig8040.19372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8040:4797..5342- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCAACAGGCCACTACCGCTAGAGCAGCATCCCGGCCTTTGCTTCTCT
TTGGGCAGAGGCTGACCGACATCTAGACACAGAAATGGCGAGGGCGGAAG
AGGTGCGGCGGAATGAATTTTATTTGCGTCCCGGAGTCTCGCTGGCTCTA
CTATTGTGGCAGCTCACGTCAGAGTACGGTGTGTGATCTCCTTTCTACGA
GCGCGGGTGGATATGCAATACATACCTCCAAGAGATCCCTGACCTATTGT
ACATGCCTTGTCTCTGGTTGCGCCTCGATTTCGCACAGCAGAGCAGCAGC
AGTTGCGGGAAGGCCGGGATGCTGACACCACAAACACGGCAACCAGCTCC
GGATCTACCGCTGTATCTGGGCTCCTTGTTGATCTTCCTCTTTCATGCAT
ACGATAGCGCATATTTTGCTCACGAATCTGCTTTCCTTGGTGTACCGTCT
GTCGTCAGCTGACAGTGGTTACGGACCTACAGACACGAGGCAATCAGCTG
TTAGCTTCTAGATAACGGTGGGCGCTTACCGAAGAGGAGGGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8040:4797..5342-

>mRNA_Ecto-sp13_S_contig8040.19372.1 ID=mRNA_Ecto-sp13_S_contig8040.19372.1|Name=mRNA_Ecto-sp13_S_contig8040.19372.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8040:4797..5342- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGGGCGGAAGAGAGCAGCAGCAGTTGCGGGAAGGCCGGGATGCT
GACACCACAAACACGGCAACCAGCTCCGGATCTACCGCTGTATCTGGGCT
CCTTGTTGATCTTCCTCTTTCATGCATACGATAGCGCATATTTTGCTCAC
GAATCTGCTTTCCTTGGTGTACCGTCTGTCGTCAGCTGA
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