mRNA_Ecto-sp13_S_contig80383.19368.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80383.19368.1
Unique NamemRNA_Ecto-sp13_S_contig80383.19368.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80383.19368.1 vs. uniprot
Match: D8LHR8_ECTSI (CTLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR8_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.140e-24
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:   13 RFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASN 159
            RFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASN
Sbjct:  706 RFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLRVCKTPSEAELASN 754
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80383.19368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR8_ECTSI3.140e-24100.00CTLH domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80383contigEcto-sp13_S_contig80383:456..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue8.4e-20
Seed eggNOG ortholog2880.D8LHR8
Preferred nameWDR47
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGsKOG0641@1,KOG0641@2759
Cds size159
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464077.0392354-CDS-Ecto-sp13_S_contig80383:455..6141681464077.0392354-CDS-Ecto-sp13_S_contig80383:455..614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80383 456..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80383.19368.1prot_Ecto-sp13_S_contig80383.19368.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80383 456..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80383.19368.1

>prot_Ecto-sp13_S_contig80383.19368.1 ID=prot_Ecto-sp13_S_contig80383.19368.1|Name=mRNA_Ecto-sp13_S_contig80383.19368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
PPPRRFFPTILVSGSHPVRSVGFSADGGLFAVGCNDRTLRVCKTPSEAEL
ASN
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mRNA from alignment at Ecto-sp13_S_contig80383:456..614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80383.19368.1 ID=mRNA_Ecto-sp13_S_contig80383.19368.1|Name=mRNA_Ecto-sp13_S_contig80383.19368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80383:456..614+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCCTCGCAGATTTTTCCCGACGATTCTCGTCAGCGGGTCACATCC
GGTGAGGTCTGTGGGCTTCTCTGCCGACGGAGGCCTTTTCGCGGTGGGGT
GCAACGACAGGACCCTGCGGGTTTGCAAGACACCCTCGGAGGCCGAGCTG
GCTTCCAAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80383:456..614+

>mRNA_Ecto-sp13_S_contig80383.19368.1 ID=mRNA_Ecto-sp13_S_contig80383.19368.1|Name=mRNA_Ecto-sp13_S_contig80383.19368.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80383:456..614+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCCCTCGCAGATTTTTCCCGACGATTCTCGTCAGCGGGTCACATCC
GGTGAGGTCTGTGGGCTTCTCTGCCGACGGAGGCCTTTTCGCGGTGGGGT
GCAACGACAGGACCCTGCGGGTTTGCAAGACACCCTCGGAGGCCGAGCTG
GCTTCCAAT
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