prot_Ecto-sp13_S_contig12307.1936.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12307.1936.1
Unique Nameprot_Ecto-sp13_S_contig12307.1936.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length327
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12307.1936.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 391 bits (1005), Expect = 4.440e-123
Identity = 272/331 (82.18%), Postives = 284/331 (85.80%), Query Frame = 0 
Query:    1 MATSPANEEISSAQKSSLHPSKNPQRLIRRRRSRSWQMEMGIAAGEESSGSAPAPRASGPITIGDRTMLPPSGPAVLERRQSLDSTRLDGFGSEEAAAGSAAAPSPRLANRKWFSAWFLGKKRMMSLPSSSQVQAADPASSSSIPNGGKGEGVGPSLLQRAGIADAPKKPVAGADAMAKRRHGSGSTXXXXXXRRPASGAFSRRGSDAAAKRKSHTIFPGSSPMRPAGAATXXXXXXXXXXXXXXXXXXXXXXXXAGEDTLTTPPPT----ARPCLPSCEVRKRRTPXXXXXXXXXXXXXXXXXXGRPPRRAGFADSGTAEDAGAGGQGRA 327
            MAT  ANE+I SA+KSSLHPSKNPQR IRRRRSRSWQ+EMGIAAGE S GSAPAPRASGPITIGDRTMLP SGPAV+ERR+SLDSTRLDGFGSEEAAAGSAAAPS R++NRKWFSAWFLGKKRMMSLPSSSQVQAADPASS S+PNGGKGEGVGPSLLQRAG+ADAPKKP+AGADAMAKRRHGSGS+XXX   RRPASGAFSRRGSDAAAKRKSHTIFPG SPMRPAGAAT   XXXXXXXXXXXXXXXXXXXXX                ARPCLPSCE R          XXXXXXXXXXXXXGRPPRRAG +DS TAEDA AGGQ RA
Sbjct:    1 MATFAANEDIYSARKSSLHPSKNPQRPIRRRRSRSWQVEMGIAAGEPS-GSAPAPRASGPITIGDRTMLPSSGPAVVERRKSLDSTRLDGFGSEEAAAGSAAAPSARVSNRKWFSAWFLGKKRMMSLPSSSQVQAADPASSLSVPNGGKGEGVGPSLLQRAGVADAPKKPIAGADAMAKRRHGSGSSXXXS--RRPASGAFSRRGSDAAAKRKSHTIFPGISPMRPAGAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPCLPSCEARXXXX------XXXXXXXXXXXXXGRPPRRAGLSDSDTAEDADAGGQARA 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12307.1936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5G6_9PHAE4.440e-12382.18Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12307contigEcto-sp13_S_contig12307:4051..5031 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12307.1936.1mRNA_Ecto-sp13_S_contig12307.1936.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12307 3995..5031 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12307.1936.1 ID=prot_Ecto-sp13_S_contig12307.1936.1|Name=mRNA_Ecto-sp13_S_contig12307.1936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=327bp
MATSPANEEISSAQKSSLHPSKNPQRLIRRRRSRSWQMEMGIAAGEESSG
SAPAPRASGPITIGDRTMLPPSGPAVLERRQSLDSTRLDGFGSEEAAAGS
AAAPSPRLANRKWFSAWFLGKKRMMSLPSSSQVQAADPASSSSIPNGGKG
EGVGPSLLQRAGIADAPKKPVAGADAMAKRRHGSGSTSSSSSSRRPASGA
FSRRGSDAAAKRKSHTIFPGSSPMRPAGAATATAAAAASSTGNVEARQAG
AGAGAAGEDTLTTPPPTARPCLPSCEVRKRRTPAAAAAAGAAAAPHAATT
TGRPPRRAGFADSGTAEDAGAGGQGRA
back to top