mRNA_Ecto-sp13_S_contig8036.19364.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8036.19364.1
Unique Name	mRNA_Ecto-sp13_S_contig8036.19364.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5JB59_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB59_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.740e-69
Identity = 115/131 (87.79%), Postives = 122/131 (93.13%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLRKAKL 480
            + TVDEDLGEALKGLGLAPGATPT+ASM AVQTWL V+EKEG+AEA I  DLKDDLCEESLAHLNMDQLNIDSDDDEAD SAGDEG+CTQPLVSPR PPYA+VSR+FGDLEEIAERCSMAGVA HLRKAKL
Sbjct:  238 KTTVDEDLGEALKGLGLAPGATPTQASMKAVQTWLRVEEKEGIAEANI-EDLKDDLCEESLAHLNMDQLNIDSDDDEADSSAGDEGKCTQPLVSPRPPPYADVSRKFGDLEEIAERCSMAGVAYHLRKAKL 367

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5JRP4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP4_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.930e-68
Identity = 115/131 (87.79%), Postives = 120/131 (91.60%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLRKAKL 480
            +  V EDLGEALKGLGLAPGA PTRASM+A QTWL V+EKEGVAEAII ADLKDDLCEESLAHLNMDQLNIDSDDDEAD  AGDEGQCTQPLVSPR PPYA+VSRQFGDLEEIAERCSMAGVA HLRKAK+
Sbjct:  382 KTAVHEDLGEALKGLGLAPGAAPTRASMEAAQTWLRVEEKEGVAEAII-ADLKDDLCEESLAHLNMDQLNIDSDDDEADSLAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLRKAKI 511

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5K2E1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E1_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 3.910e-67
Identity = 116/129 (89.92%), Postives = 122/129 (94.57%), Query Frame = 1

Query:   94 TVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLRKAKL 480
            TVDEDLGEALKGLGLAPGATPTRASM+AVQTWL V++KEGVAEAII  DLKDDLCEESLAHLNMDQL+IDSDDDEAD SAGDEGQCTQPLVSPR P YA+VSRQFGDLEEIAERCSMAGVA HLRKAK+
Sbjct:  508 TVDEDLGEALKGLGLAPGATPTRASMEAVQTWLRVEQKEGVAEAII-KDLKDDLCEESLAHLNMDQLSIDSDDDEADFSAGDEGQCTQPLVSPRPPTYADVSRQFGDLEEIAERCSMAGVAYHLRKAKV 635

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5K2U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U1_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.840e-63
Identity = 109/131 (83.21%), Postives = 116/131 (88.55%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLRKAKL 480
            + TVDEDLGEALKGL L PGATPTRASM+AVQT L V+EKEGVA AII ADLKD+LCEESLAHLNMDQLN  SDDDEAD S GDEGQCTQPLVSPR P YA+VS QFGDLEEIA+RCSMAG+A HLRKAKL
Sbjct:  121 KTTVDEDLGEALKGLRLVPGATPTRASMEAVQTRLRVEEKEGVAGAII-ADLKDNLCEESLAHLNMDQLNKHSDDDEADSSVGDEGQCTQPLVSPRPPQYADVSMQFGDLEEIAKRCSMAGIAYHLRKAKL 250

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5JHY0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY0_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.140e-58
Identity = 118/199 (59.30%), Postives = 124/199 (62.31%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAII-------------------------------------------------------------------IADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEI-AERCSMAGVADHLRKAKL 480
            + TVDEDLGEALKGLGLAPGATPT ASM+AVQTWL V+E++GVAEAII                                                                   IADLKDDLCEESLAHLN DQLNIDSDDDEAD SAGDEGQCTQPLVSPR PPYA+VSRQFGDLEEI AERCSMAGVA HLRKAKL
Sbjct:  241 KTTVDEDLGEALKGLGLAPGATPTWASMEAVQTWLRVEEEDGVAEAIIADLKDDLCEESLAHLNTDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYAXWLRVEEEDGVAEAIIADLKDDLCEESLAHLNTDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIIAERCSMAGVAYHLRKAKL 439

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5JJP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP0_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.750e-49
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANV 396
            + TVDE LGEALKGLG APGATP RASM+AVQTWL V+EKEGVAEAII ADLKDDLCEESLAHLNMDQLNIDSDDDEAD SAGDEGQCTQPLVSPR PPYA+V
Sbjct:  373 KTTVDEHLGEALKGLGFAPGATPPRASMEAVQTWLRVEEKEGVAEAII-ADLKDDLCEESLAHLNMDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADV 474

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5KT98_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT98_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.230e-39
Identity = 78/87 (89.66%), Postives = 81/87 (93.10%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQ 348
            + TVDEDLGEALKGLGLAPGATPTRAS  AVQTWL V++KEGVAEAII ADLKDDLCEESLAHLNMDQLNIDSDDDEAD SAGDEGQ
Sbjct:  346 KTTVDEDLGEALKGLGLAPGATPTRASTKAVQTWLRVEDKEGVAEAII-ADLKDDLCEESLAHLNMDQLNIDSDDDEADSSAGDEGQ 431

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5K7D7_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7D7_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.610e-36
Identity = 77/99 (77.78%), Postives = 84/99 (84.85%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPP 384
            + TVDEDLGE+LKGLGL PGAT TR SM+AV   +  ++K+GVAEAII ADLKDDLCEE LAHLNMDQLN DSDDDEAD SAGDEGQCTQP VSPR PP
Sbjct:  342 KTTVDEDLGESLKGLGLVPGATSTRDSMEAVHGCVK-RKKKGVAEAII-ADLKDDLCEELLAHLNMDQLNRDSDDDEADSSAGDEGQCTQPPVSPRPPP 438

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5JNH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH8_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.640e-31
Identity = 78/129 (60.47%), Postives = 79/129 (61.24%), Query Frame = 1

Query:   94 TVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDEADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLRKAKL 480
            TVDEDLGEALKG                              EAII ADLKDDLCEESLAHLNMDQ             AGDEGQCTQ LV PR PPYA+VSRQF DLEE AERCSMAGVA HLRKAKL
Sbjct:  325 TVDEDLGEALKG------------------------------EAII-ADLKDDLCEESLAHLNMDQXXXXXXXXXXXSLAGDEGQCTQTLVYPRPPPYADVSRQFVDLEEKAERCSMAGVAYHLRKAKL 422

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BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Match: A0A6H5K3V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.840e-25
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 1

Query:   88 QITVDEDLGEALKGLGLAPGATPTRASMDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAH 276
            + TVDEDLGEAL+GLGLAPGATPTRASM+AVQTWL   EKEGVAEAII ADLKDDLCEESLAH
Sbjct:   85 KTTVDEDLGEALEGLGLAPGATPTRASMEAVQTWLRAAEKEGVAEAII-ADLKDDLCEESLAH 146

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8036.19364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13


Match Name	E-value	Identity	Description
A0A6H5JB59_9PHAE	1.740e-69	87.79	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JRP4_9PHAE	8.930e-68	87.79	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5K2E1_9PHAE	3.910e-67	89.92	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5K2U1_9PHAE	1.840e-63	83.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHY0_9PHAE	1.140e-58	59.30	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5JJP0_9PHAE	1.750e-49	88.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KT98_9PHAE	4.230e-39	89.66	DDE-1 domain-containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K7D7_9PHAE	2.610e-36	77.78	HTH CENPB-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5JNH8_9PHAE	1.640e-31	60.47	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3V5_9PHAE	1.840e-25	87.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8036	contig	Ecto-sp13_S_contig8036:6006..6552 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	547
Hectar predicted targeting category	other localisation
Exons	1
Cds size	315

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464076.7097757-UTR-Ecto-sp13_S_contig8036:6005..6173	1681464076.7097757-UTR-Ecto-sp13_S_contig8036:6005..6173	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8036 6006..6173 +
1681464076.7323513-UTR-Ecto-sp13_S_contig8036:6488..6552	1681464076.7323513-UTR-Ecto-sp13_S_contig8036:6488..6552	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig8036 6489..6552 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464076.7212803-CDS-Ecto-sp13_S_contig8036:6173..6488	1681464076.7212803-CDS-Ecto-sp13_S_contig8036:6173..6488	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8036 6174..6488 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8036.19364.1	prot_Ecto-sp13_S_contig8036.19364.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8036 6174..6488 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8036:6006..6552+
coding sequence from alignment at Ecto-sp13_S_contig8036:6006..6552+

protein sequence of mRNA_Ecto-sp13_S_contig8036.19364.1

>prot_Ecto-sp13_S_contig8036.19364.1 ID=prot_Ecto-sp13_S_contig8036.19364.1|Name=mRNA_Ecto-sp13_S_contig8036.19364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MDAVQTWLGVKEKEGVAEAIIIADLKDDLCEESLAHLNMDQLNIDSDDDE
ADCSAGDEGQCTQPLVSPRSPPYANVSRQFGDLEEIAERCSMAGVADHLR
KAKL*

mRNA from alignment at Ecto-sp13_S_contig8036:6006..6552+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8036.19364.1 ID=mRNA_Ecto-sp13_S_contig8036.19364.1|Name=mRNA_Ecto-sp13_S_contig8036.19364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8036:6006..6552+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGAGCATGAGCGGCGTAGCAATCGCGAAGGATATGGGGATCGGGGTGA
TCACCTTGTACGGGTGGAGAGCTAAGGAAGCAGACATCAGATAACTGTCG
ATGAAGACCTTGGCGAGGCGCTTAAGGGTCTGGGGTTGGCACCTGGCGCA
ACGCCAACCCGGGCTTCCATGGATGCCGTGCAGACATGGTTGGGTGTAAA
GGAAAAAGAGGGTGTTGCGGAGGCGATTATTATTGCAGATCTGAAGGACG
ATCTTTGTGAGGAGTCGCTTGCCCACCTGAACATGGACCAACTGAACATA
GATTCGGACGACGACGAGGCCGACTGTTCGGCGGGAGACGAGGGACAGTG
TACGCAGCCCCTGGTCTCTCCTCGTTCACCACCGTACGCTAACGTATCTA
GGCAGTTCGGAGACCTCGAAGAAATAGCAGAAAGGTGCAGCATGGCCGGG
GTAGCTGACCATCTTCGCAAGGCGAAGTTATAGCCTGGATGAGCGAGGCT
GGGTCAAAGAAAACGAAGCAAACATGTATGGCAGACTTCATGTAAAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8036:6006..6552+

>mRNA_Ecto-sp13_S_contig8036.19364.1 ID=mRNA_Ecto-sp13_S_contig8036.19364.1|Name=mRNA_Ecto-sp13_S_contig8036.19364.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8036:6006..6552+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCCGTGCAGACATGGTTGGGTGTAAAGGAAAAAGAGGGTGTTGC
GGAGGCGATTATTATTGCAGATCTGAAGGACGATCTTTGTGAGGAGTCGC
TTGCCCACCTGAACATGGACCAACTGAACATAGATTCGGACGACGACGAG
GCCGACTGTTCGGCGGGAGACGAGGGACAGTGTACGCAGCCCCTGGTCTC
TCCTCGTTCACCACCGTACGCTAACGTATCTAGGCAGTTCGGAGACCTCG
AAGAAATAGCAGAAAGGTGCAGCATGGCCGGGGTAGCTGACCATCTTCGC
AAGGCGAAGTTATAG