mRNA_Ecto-sp13_S_contig12307.1936.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12307.1936.1
Unique NamemRNA_Ecto-sp13_S_contig12307.1936.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12307.1936.1 vs. uniprot
Match: A0A6H5K5G6_9PHAE (Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G6_9PHAE)

HSP 1 Score: 392 bits (1007), Expect = 4.480e-123
Identity = 272/331 (82.18%), Postives = 284/331 (85.80%), Query Frame = 3 
Query:   57 MATSPANEEISSAQKSSLHPSKNPQRLIRRRRSRSWQMEMGIAAGEESSGSAPAPRASGPITIGDRTMLPPSGPAVLERRQSLDSTRLDGFGSEEAAAGSAAAPSPRLANRKWFSAWFLGKKRMMSLPSSSQVQAADPASSSSIPNGGKGEGVGPSLLQRAGIADAPKKPVAGADAMAKRRHGSGSTXXXXXXRRPASGAFSRRGSDAAAKRKSHTIFPGSSPMRPAGAATXXXXXXXXXXXXXXXXXXXXXXXXAGEDTLTTPPPT----ARPCLPSCEVRKRRTPXXXXXXXXXXXXXXXXXXGRPPRRAGFADSGTAEDAGAGGQGRA 1037
            MAT  ANE+I SA+KSSLHPSKNPQR IRRRRSRSWQ+EMGIAAGE S GSAPAPRASGPITIGDRTMLP SGPAV+ERR+SLDSTRLDGFGSEEAAAGSAAAPS R++NRKWFSAWFLGKKRMMSLPSSSQVQAADPASS S+PNGGKGEGVGPSLLQRAG+ADAPKKP+AGADAMAKRRHGSGS+XXX   RRPASGAFSRRGSDAAAKRKSHTIFPG SPMRPAGAAT   XXXXXXXXXXXXXXXXXXXXX                ARPCLPSCE R          XXXXXXXXXXXXXGRPPRRAG +DS TAEDA AGGQ RA
Sbjct:    1 MATFAANEDIYSARKSSLHPSKNPQRPIRRRRSRSWQVEMGIAAGEPS-GSAPAPRASGPITIGDRTMLPSSGPAVVERRKSLDSTRLDGFGSEEAAAGSAAAPSARVSNRKWFSAWFLGKKRMMSLPSSSQVQAADPASSLSVPNGGKGEGVGPSLLQRAGVADAPKKPIAGADAMAKRRHGSGSSXXXS--RRPASGAFSRRGSDAAAKRKSHTIFPGISPMRPAGAATATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPCLPSCEARXXXX------XXXXXXXXXXXXXGRPPRRAGLSDSDTAEDADAGGQARA 322
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12307.1936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K5G6_9PHAE4.480e-12382.18Deubiquitinating enzyme A n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12307contigEcto-sp13_S_contig12307:3995..5031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1037
Hectar predicted targeting categoryother localisation
Exons1
Cds size981
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.3910306-UTR-Ecto-sp13_S_contig12307:3994..40501681462655.3910306-UTR-Ecto-sp13_S_contig12307:3994..4050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12307 3995..4050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.402365-CDS-Ecto-sp13_S_contig12307:4050..50311681462655.402365-CDS-Ecto-sp13_S_contig12307:4050..5031Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12307 4051..5031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12307.1936.1prot_Ecto-sp13_S_contig12307.1936.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12307 4051..5031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12307.1936.1

>prot_Ecto-sp13_S_contig12307.1936.1 ID=prot_Ecto-sp13_S_contig12307.1936.1|Name=mRNA_Ecto-sp13_S_contig12307.1936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=327bp
MATSPANEEISSAQKSSLHPSKNPQRLIRRRRSRSWQMEMGIAAGEESSG
SAPAPRASGPITIGDRTMLPPSGPAVLERRQSLDSTRLDGFGSEEAAAGS
AAAPSPRLANRKWFSAWFLGKKRMMSLPSSSQVQAADPASSSSIPNGGKG
EGVGPSLLQRAGIADAPKKPVAGADAMAKRRHGSGSTSSSSSSRRPASGA
FSRRGSDAAAKRKSHTIFPGSSPMRPAGAATATAAAAASSTGNVEARQAG
AGAGAAGEDTLTTPPPTARPCLPSCEVRKRRTPAAAAAAGAAAAPHAATT
TGRPPRRAGFADSGTAEDAGAGGQGRA
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mRNA from alignment at Ecto-sp13_S_contig12307:3995..5031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12307.1936.1 ID=mRNA_Ecto-sp13_S_contig12307.1936.1|Name=mRNA_Ecto-sp13_S_contig12307.1936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1037bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12307:3995..5031+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGGACGATCGATGTGAGAGGCGCGTTGGCAGCAGCCAGCAGTCGCG
GTGGTCATGGCCACCTCCCCAGCGAACGAAGAAATCTCTTCCGCTCAAAA
GTCCTCGCTCCACCCCTCGAAGAATCCGCAGCGTCTTATCCGGCGTAGAA
GGTCTAGGAGTTGGCAGATGGAGATGGGCATCGCCGCAGGAGAAGAATCA
TCTGGAAGTGCTCCTGCTCCCCGAGCCAGCGGGCCGATCACCATCGGTGA
CCGAACAATGCTGCCTCCTTCCGGCCCCGCCGTCTTAGAGCGGCGGCAAA
GTCTCGATAGCACCCGTCTCGATGGGTTCGGGTCCGAGGAGGCAGCAGCA
GGCTCGGCGGCGGCTCCAAGCCCTCGACTGGCAAACAGGAAATGGTTTTC
CGCCTGGTTTCTTGGGAAAAAGCGGATGATGTCTCTCCCTTCCTCGTCGC
AGGTGCAAGCAGCAGATCCCGCATCGTCATCATCAATACCCAACGGAGGC
AAGGGGGAAGGCGTCGGCCCCAGCCTGCTCCAGCGAGCAGGGATCGCCGA
CGCGCCTAAGAAGCCGGTCGCTGGTGCTGACGCTATGGCCAAGCGAAGGC
ACGGCAGCGGTAGCACGAGCAGCAGCAGCAGCAGCAGACGGCCAGCGTCG
GGAGCGTTCAGCAGGCGGGGTTCGGATGCGGCGGCGAAGAGGAAATCGCA
CACGATCTTCCCGGGAAGCTCACCGATGCGGCCGGCTGGGGCAGCAACCG
CTACAGCAGCAGCAGCAGCATCATCAACTGGGAATGTAGAGGCACGGCAA
GCGGGGGCGGGGGCGGGGGCGGCAGGAGAAGACACGCTGACAACTCCGCC
GCCGACCGCGCGGCCTTGCCTGCCGAGCTGCGAGGTAAGAAAGAGGCGGA
CACCAGCAGCAGCGGCAGCAGCAGGAGCAGCAGCAGCGCCGCATGCTGCA
ACGACCACCGGACGGCCACCACGGCGGGCAGGATTCGCCGACTCCGGCAC
CGCGGAAGATGCGGGCGCTGGCGGGCAAGGGCGGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12307:3995..5031+

>mRNA_Ecto-sp13_S_contig12307.1936.1 ID=mRNA_Ecto-sp13_S_contig12307.1936.1|Name=mRNA_Ecto-sp13_S_contig12307.1936.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=981bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12307:3995..5031+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCACCTCCCCAGCGAACGAAGAAATCTCTTCCGCTCAAAAGTCCTC
GCTCCACCCCTCGAAGAATCCGCAGCGTCTTATCCGGCGTAGAAGGTCTA
GGAGTTGGCAGATGGAGATGGGCATCGCCGCAGGAGAAGAATCATCTGGA
AGTGCTCCTGCTCCCCGAGCCAGCGGGCCGATCACCATCGGTGACCGAAC
AATGCTGCCTCCTTCCGGCCCCGCCGTCTTAGAGCGGCGGCAAAGTCTCG
ATAGCACCCGTCTCGATGGGTTCGGGTCCGAGGAGGCAGCAGCAGGCTCG
GCGGCGGCTCCAAGCCCTCGACTGGCAAACAGGAAATGGTTTTCCGCCTG
GTTTCTTGGGAAAAAGCGGATGATGTCTCTCCCTTCCTCGTCGCAGGTGC
AAGCAGCAGATCCCGCATCGTCATCATCAATACCCAACGGAGGCAAGGGG
GAAGGCGTCGGCCCCAGCCTGCTCCAGCGAGCAGGGATCGCCGACGCGCC
TAAGAAGCCGGTCGCTGGTGCTGACGCTATGGCCAAGCGAAGGCACGGCA
GCGGTAGCACGAGCAGCAGCAGCAGCAGCAGACGGCCAGCGTCGGGAGCG
TTCAGCAGGCGGGGTTCGGATGCGGCGGCGAAGAGGAAATCGCACACGAT
CTTCCCGGGAAGCTCACCGATGCGGCCGGCTGGGGCAGCAACCGCTACAG
CAGCAGCAGCAGCATCATCAACTGGGAATGTAGAGGCACGGCAAGCGGGG
GCGGGGGCGGGGGCGGCAGGAGAAGACACGCTGACAACTCCGCCGCCGAC
CGCGCGGCCTTGCCTGCCGAGCTGCGAGGTAAGAAAGAGGCGGACACCAG
CAGCAGCGGCAGCAGCAGGAGCAGCAGCAGCGCCGCATGCTGCAACGACC
ACCGGACGGCCACCACGGCGGGCAGGATTCGCCGACTCCGGCACCGCGGA
AGATGCGGGCGCTGGCGGGCAAGGGCGGGCG
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