mRNA_Ecto-sp13_S_contig80281.19351.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80281.19351.1
Unique NamemRNA_Ecto-sp13_S_contig80281.19351.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: D7FNK5_ECTSI (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNK5_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 5.480e-35
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TLEVVTAKFEEVYQG +GVPGLKDVE LIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG
Sbjct:   77 TLEVVTAKFEEVYQGKQGVPGLKDVETLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 141
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A835YW16_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW16_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.580e-23
Identity = 48/65 (73.85%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TLE VT KFEE+YQGT G PGL  +E LIPAKG+LEEL RRLP GM IVTGRPR DCD FL+ HG
Sbjct:   60 TLEEVTDKFEELYQGTPGKPGLCTLERLIPAKGLLEELNRRLPHGMGIVTGRPRKDCDTFLKAHG 124
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A1V9Y5B1_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5B1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.580e-21
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TL  +TAKFEE+YQGT   PGL  +E LI AKG+L EL RRLP GMAIVTGRP+ DCD FL  HG
Sbjct:   69 TLAEITAKFEEIYQGTASAPGLCSLETLITAKGLLVELNRRLPKGMAIVTGRPKKDCDKFLADHG 133
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A1W0A789_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A789_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.420e-20
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TLE +T+KFEE+YQGT   PGL  +E LI  KG+L EL RRL  GMAIVTGRPR DCD FL+ HG
Sbjct:   71 TLEEITSKFEEIYQGTAAAPGLCSLETLITTKGLLVELNRRLSKGMAIVTGRPRKDCDKFLRDHG 135
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A067CVV1_SAPPC (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVV1_SAPPC)

HSP 1 Score: 90.5 bits (223), Expect = 8.680e-20
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKH 192
            TL  +TAKFEE+YQGT   PGL  +E LI  KG+L EL RRLP GMAIVTGRPR DCD FL+ H
Sbjct:   69 TLAEITAKFEEIYQGTATTPGLCSLETLITTKGLLLELHRRLPKGMAIVTGRPRKDCDKFLRDH 132
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A024TCM6_9STRA (Imidazoleglycerol-phosphate dehydratase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCM6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.130e-20
Identity = 41/62 (66.13%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQ 186
            TLE VT  FEE+YQGT+G PGL  +E L+P+KG+LEEL RRLP GMA+VTGRP+ DC  FL+
Sbjct:   74 TLEQVTVAFEEIYQGTDGTPGLYRLETLLPSKGLLEELHRRLPNGMAVVTGRPKKDCIKFLK 135
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: W2PDF3_PHYPN (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PDF3_PHYPN)

HSP 1 Score: 86.7 bits (213), Expect = 1.150e-19
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TLE VTA+FE +YQG    PGL ++E L+  KG+L EL RRLP GMA+VTGRPR DC  FL  HG
Sbjct:   75 TLEAVTAQFEALYQGVGNTPGLCELETLLTPKGLLRELHRRLPKGMAVVTGRPRKDCAKFLTTHG 139
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: K3X0H1_GLOUD (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0H1_GLOUD)

HSP 1 Score: 89.7 bits (221), Expect = 1.690e-19
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQKHG 195
            TLE VT  FE+ YQG +G PGL ++E L+  KG+L+EL RRLP GMA+VTGRPR DC+ FL+ HG
Sbjct:   75 TLEDVTRVFEDFYQGVDGTPGLCELETLLTPKGLLQELHRRLPKGMAVVTGRPRKDCEKFLKAHG 139
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A485LAP2_9STRA (Imidazoleglycerol-phosphate dehydratase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAP2_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.390e-19
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQ 186
            TLE VTAKFEE+YQGT+  PGL  +E LIP+KG+L EL RRLP GMAIVTGRP+ DC  FL+
Sbjct:   70 TLEQVTAKFEEIYQGTDTTPGLYCLETLIPSKGLLIELNRRLPKGMAIVTGRPKKDCVKFLK 131
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BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Match: A0A418EEN2_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EEN2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.570e-19
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVTGRPRGDCDYFLQ 186
            TLE VT  FEE+YQGT+  PGL  +E L+P+KG+LEEL RRLP GMA+VTGRP+ DC  FL+
Sbjct:   74 TLEQVTIAFEEIYQGTDSTPGLYRLETLLPSKGLLEELNRRLPNGMAVVTGRPKKDCIKFLK 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80281.19351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNK5_ECTSI5.480e-3595.38Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ec... [more]
A0A835YW16_9STRA2.580e-2373.85Imidazoleglycerol-phosphate dehydratase n=1 Tax=Tr... [more]
A0A1V9Y5B1_9STRA6.580e-2167.69Imidazoleglycerol-phosphate dehydratase n=1 Tax=Ac... [more]
A0A1W0A789_9STRA2.420e-2066.15Imidazoleglycerol-phosphate dehydratase n=1 Tax=Th... [more]
A0A067CVV1_SAPPC8.680e-2067.19Imidazoleglycerol-phosphate dehydratase n=2 Tax=Sa... [more]
A0A024TCM6_9STRA9.130e-2066.13Imidazoleglycerol-phosphate dehydratase n=2 Tax=Ap... [more]
W2PDF3_PHYPN1.150e-1961.54Imidazoleglycerol-phosphate dehydratase n=1 Tax=Ph... [more]
K3X0H1_GLOUD1.690e-1961.54Imidazoleglycerol-phosphate dehydratase n=1 Tax=Gl... [more]
A0A485LAP2_9STRA2.390e-1969.35Imidazoleglycerol-phosphate dehydratase n=1 Tax=Ap... [more]
A0A418EEN2_9STRA2.570e-1964.52Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80281contigEcto-sp13_S_contig80281:3..598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score131.0
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D7FNK5
Preferred nameHIS3
Model size198
KEGG rclassRC00932
KEGG koko:K01693,ko:K14713
KEGG TC2.A.5.4.3,2.A.5.4.4,2.A.5.4.7
KEGG ReactionR03457
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
Hectar predicted targeting categoryother localisation
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004424,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0046483,GO:0052803,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons2
EggNOG free text desc.imidazoleglycerol-phosphate dehydratase activity
EggNOG OGsCOG0131@1,KOG3143@2759
EC4.2.1.19
Cds size198
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464075.9108818-CDS-Ecto-sp13_S_contig80281:2..1031681464075.9108818-CDS-Ecto-sp13_S_contig80281:2..103Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80281 3..103 -
1681464075.9294376-CDS-Ecto-sp13_S_contig80281:501..5981681464075.9294376-CDS-Ecto-sp13_S_contig80281:501..598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80281 502..598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80281.19351.1prot_Ecto-sp13_S_contig80281.19351.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80281 3..598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80281.19351.1

>prot_Ecto-sp13_S_contig80281.19351.1 ID=prot_Ecto-sp13_S_contig80281.19351.1|Name=mRNA_Ecto-sp13_S_contig80281.19351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
TLEVVTAKFEEVYQGTEGVPGLKDVENLIPAKGVLEELARRLPMGMAIVT
GRPRGDCDYFLQKHG*
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mRNA from alignment at Ecto-sp13_S_contig80281:3..598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80281.19351.1 ID=mRNA_Ecto-sp13_S_contig80281.19351.1|Name=mRNA_Ecto-sp13_S_contig80281.19351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80281:3..598- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCTTGAGGTCGTGACGGCCAAGTTTGAGGAGGTGTACCAAGGGACAGA
AGGCGTGCCGGGGCTGAAGGACGTGGAGAATCTCATCCCGGCTAAAGGTG
GGATGGAAGACGGGTTGGTTGACGGCGCGGGGGAGGCGGTTCGAGAACAG
CTGTCAATGGTTTTACCGATTAGAACAGCTATCAACGAGTCTTATCGATT
AGAACAGCTGTCAATGAGTCTTACCGATGGCCGTCATCTGGAGTATCCGA
CAACAACGAAGTGTGTCCCAAAAGCCTGCTGCTAGTGTTGCTCAAGTGGC
CGGCACCTCCATGCTGAATATCGAATCCTTTTGAATACCATTGTTTGATT
TCCCGTTCTTCGCAATGCCAGGCCTTCTCCTGCGATTCGCTCGCATGGCT
GAAATCGTTCTCCTTCGGCCCACACAACAGCTGCTGCATAGCTACCCCTA
CCCCACCCGTCTTCCCCCTCTCCCTCCTCTGCGTTTTATCTGAAGGCGTG
TTGGAAGAGCTCGCACGACGTCTGCCGATGGGCATGGCAATCGTCACGGG
CAGGCCAAGAGGCGACTGTGACTATTTCCTTCAGAAACATGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80281:3..598-

>mRNA_Ecto-sp13_S_contig80281.19351.1 ID=mRNA_Ecto-sp13_S_contig80281.19351.1|Name=mRNA_Ecto-sp13_S_contig80281.19351.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80281:3..598- (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCTTGAGGTCGTGACGGCCAAGTTTGAGGAGGTGTACCAAGGGACAGA
AGGCGTGCCGGGGCTGAAGGACGTGGAGAATCTCATCCCGGCTAAAGGCG
TGTTGGAAGAGCTCGCACGACGTCTGCCGATGGGCATGGCAATCGTCACG
GGCAGGCCAAGAGGCGACTGTGACTATTTCCTTCAGAAACATGGGTAA
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