prot_Ecto-sp13_S_contig8023.19344.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8023.19344.1
Unique Nameprot_Ecto-sp13_S_contig8023.19344.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length262
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Match: A0A6H5JQQ1_9PHAE (R3H domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ1_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 4.000e-110
Identity = 188/195 (96.41%), Postives = 189/195 (96.92%), Query Frame = 0 
Query:   67 EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSLAEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALSSASSASAAPMPALGGSASGXXXXXXGGDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 261
            EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTN EAISHTFPHVEKSLRSIQHSLAEDFDGIT+RTEGELDDRRVVLYKLGYEPPEEEVQVD QVHLGLARN LSSASSASAAPMPALGGSA GXXXXXX  DVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC
Sbjct:  206 EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEVQVDTQVHLGLARNTLSSASSASAAPMPALGGSAGGXXXXXXXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 400
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BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Match: D7G2L0_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L0_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.100e-90
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 0 
Query:   96 VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSLAEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALSSASSASAAPMPALGGSASGXXXXXXGGDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 261
            VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTN EAISHTFPHVEKSLRSIQHSLAEDFDGIT+RTEGELDDRRVVLYKLGYEPPEEEVQVDAQVH+GLARN LSSASS SAAPMPALGGSA  XXXXXX  DVGSADLVRIGTVVKDRRTVQDIEEESRKRRR C
Sbjct:    4 VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHIGLARNTLSSASSVSAAPMPALGGSAGXXXXXXXXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRHC 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQQ1_9PHAE4.000e-11096.41R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2L0_ECTSI2.100e-9093.98R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001374R3H domainSMARTSM00393R3H_4coord: 96..175
e-value: 4.1E-6
score: 36.3
IPR001374R3H domainPFAMPF01424R3Hcoord: 117..174
e-value: 1.7E-9
score: 37.5
IPR001374R3H domainPROSITEPS51061R3Hcoord: 108..176
score: 12.963
IPR036867R3H domain superfamilyGENE3D3.30.1370.50coord: 105..191
e-value: 3.7E-15
score: 57.7
IPR036867R3H domain superfamilySUPERFAMILY82708R3H domaincoord: 117..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8023contigEcto-sp13_S_contig8023:2256..4451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8023.19344.1mRNA_Ecto-sp13_S_contig8023.19344.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8023 2256..4451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8023.19344.1 ID=prot_Ecto-sp13_S_contig8023.19344.1|Name=mRNA_Ecto-sp13_S_contig8023.19344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
MCLRTQAPPLVPPHQPYSLAYSNNSNTPAPSPPRSASSSRNSISNSGGGG
ASGGGGSGGSGGGEEKEPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRAN
RAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSL
AEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALS
SASSASAAPMPALGGSASGGTNAGGGGDVGSADLVRIGTVVKDRRTVQDI
EEESRKRRRRC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001374R3H_dom
IPR036867R3H_dom_sf