mRNA_Ecto-sp13_S_contig8023.19344.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8023.19344.1
Unique NamemRNA_Ecto-sp13_S_contig8023.19344.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Match: A0A6H5JQQ1_9PHAE (R3H domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ1_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 4.000e-110
Identity = 188/195 (96.41%), Postives = 189/195 (96.92%), Query Frame = 1 
Query:  199 EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSLAEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALSSASSASAAPMPALGGSASGXXXXXXGGDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 783
            EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTN EAISHTFPHVEKSLRSIQHSLAEDFDGIT+RTEGELDDRRVVLYKLGYEPPEEEVQVD QVHLGLARN LSSASSASAAPMPALGGSA GXXXXXX  DVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC
Sbjct:  206 EPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEVQVDTQVHLGLARNTLSSASSASAAPMPALGGSAGGXXXXXXXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 400
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BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Match: D7G2L0_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L0_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.100e-90
Identity = 156/166 (93.98%), Postives = 158/166 (95.18%), Query Frame = 1 
Query:  286 VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSLAEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALSSASSASAAPMPALGGSASGXXXXXXGGDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRRC 783
            VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTN EAISHTFPHVEKSLRSIQHSLAEDFDGIT+RTEGELDDRRVVLYKLGYEPPEEEVQVDAQVH+GLARN LSSASS SAAPMPALGGSA  XXXXXX  DVGSADLVRIGTVVKDRRTVQDIEEESRKRRR C
Sbjct:    4 VDRANRAQDQAIKQRVSNFEAEVREKIAVFSTNPEAISHTFPHVEKSLRSIQHSLAEDFDGITTRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHIGLARNTLSSASSVSAAPMPALGGSAGXXXXXXXXXDVGSADLVRIGTVVKDRRTVQDIEEESRKRRRHC 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8023.19344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQQ1_9PHAE4.000e-11096.41R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2L0_ECTSI2.100e-9093.98R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8023contigEcto-sp13_S_contig8023:2256..4451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size786
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-11_002620.1
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464075.3759851-CDS-Ecto-sp13_S_contig8023:2255..25411681464075.3759851-CDS-Ecto-sp13_S_contig8023:2255..2541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8023 2256..2541 +
1681464075.3920617-CDS-Ecto-sp13_S_contig8023:2830..29841681464075.3920617-CDS-Ecto-sp13_S_contig8023:2830..2984Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8023 2831..2984 +
1681464075.4035013-CDS-Ecto-sp13_S_contig8023:3557..36841681464075.4035013-CDS-Ecto-sp13_S_contig8023:3557..3684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8023 3558..3684 +
1681464075.415272-CDS-Ecto-sp13_S_contig8023:4232..44511681464075.415272-CDS-Ecto-sp13_S_contig8023:4232..4451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8023 4233..4451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8023.19344.1prot_Ecto-sp13_S_contig8023.19344.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8023 2256..4451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8023.19344.1

>prot_Ecto-sp13_S_contig8023.19344.1 ID=prot_Ecto-sp13_S_contig8023.19344.1|Name=mRNA_Ecto-sp13_S_contig8023.19344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
MCLRTQAPPLVPPHQPYSLAYSNNSNTPAPSPPRSASSSRNSISNSGGGG
ASGGGGSGGSGGGEEKEPAASLGGFLGSLMGSMDQTHKSVAGTAAVDRAN
RAQDQAIKQRVSNFEAEVREKIAVFSTNAEAISHTFPHVEKSLRSIQHSL
AEDFDGITSRTEGELDDRRVVLYKLGYEPPEEEVQVDAQVHLGLARNALS
SASSASAAPMPALGGSASGGTNAGGGGDVGSADLVRIGTVVKDRRTVQDI
EEESRKRRRRC*
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mRNA from alignment at Ecto-sp13_S_contig8023:2256..4451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8023.19344.1 ID=mRNA_Ecto-sp13_S_contig8023.19344.1|Name=mRNA_Ecto-sp13_S_contig8023.19344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8023:2256..4451+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTCCGGACACAGGCACCCCCGCTGGTGCCGCCGCACCAGCCTTA
TTCTTTGGCATACAGCAACAACTCGAATACACCAGCGCCCTCGCCGCCAC
GGTCTGCATCGAGTAGTAGAAACAGTATTAGTAATAGTGGGGGTGGTGGT
GCTAGTGGTGGCGGCGGTAGCGGCGGCAGCGGCGGCGGCGAAGAAAAGGA
GCCGGCAGCATCGCTCGGAGGTTTCCTGGGGTCACTGATGGGCAGCATGG
ACCAGACTCACAAAAGCGTGGCCGGCACGGCAGCGGGTGAGCGCGAGCGG
CACAGCGATACTGTTTGGTTTTCACAGTTCTTCAGCTCCTGAGTTGAGAA
ACCCCCGGCCGTTCGCGTGTGTTTGTGTCGCACTTCTGGGGTCGAACAAA
TCCCCGTCACGTCACGAAAGAGCCCTCCAAGATCTTGTCCCCCCAATACG
GCCGAGGCGACCACTATTCCTTGCTTCTCCAAGCCCCGAGAAACAAAGCA
AGCAAGAACGACCCTCACCTGCTCCATGTAACCCCTCTCCTCCTCCCGCA
CAAACCCTCGCCGAAATGAAACAAGTGGACAGAGCGAACCGGGCGCAAGA
TCAGGCAATCAAGCAGCGCGTTTCAAACTTCGAAGCAGAAGTGCGAGAGA
AGATAGCGGTATTTTCGACGAACGCCGAAGCCATCTCTCACACGTTCCCC
CACGTTGAGAAGAGCCTTCGGTCGATTCAGTGAGTCAGTGAATTTGTTTT
TATCCCATGAGTGTTTTCACCTCGCGACTACTGGTGGTGGTGGTAGTGTT
GTTGGTGCGGAATAGTCTGTCAAGTTCACGATCGAAAAAAACTTGCCTCC
ACGTGTTTTGTCCGATTTTTTCGACTATCCCTTCTAGTCCCGGAAATTTG
TGCAGGACGTTGATCATGTAGGGAACAATGGGCTCCGAGAATGTCGGCAA
AATGTCGCTGTGAATTTAGGCGGAGATGCTTGATGACGTGGCCAATGAGT
ACCAAAACTGATCCACTATTCTCCTCGACTACCCCCCATGTCGGAGGACG
CCGTGGGGTACTAGCTCTTCGCCTTATTTGCCGTTCTGCGGTGACATAGC
CACTATCGTTTCATTGGCCAATCGATTTGTGATGTCGACGCAGAATGACA
AAGAAAATGAGCGCATGCATGCTAAATTCATGGTGCCAGTAGCATTGTTG
GCAACGACGAATGTCACTTCAAAGCACAGACCTCAACACACGAAACTCAC
TCCTTGGTTCACTTTGCTGCTTCCCTAACCTGTTTATTTTCACTCGGACT
AGGCACAGTCTTGCCGAAGACTTTGATGGCATCACCTCGAGAACGGAGGG
AGAGTTGGACGACAGACGTGTGGTCTTGTACAAGCTGGGCTACGAGCCAC
CAGAGGAAGAGGTCCAGGTGGACGCGCAGGTAAGAACGGACCATCACGAA
CTTTTCGGTATGAAATCCTCTATTTGTGTTCTTGCTGTTGCGGTGTTGCG
GTGTTGTTGTTGTTGTTGTTGTCGTTTTTGTTTTGTTGATATGGCATCTG
CTGCTGCATCTGGTGGTGGTGGTGCTGCCGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTATTTATCGTTGCTGTAGCTGTTGTTTTTGTTCTCGATG
ATGTCGTTGTTGATATTGCGTTGGGCTCCTTCAGTTTTGCGAACCTTCCT
TGAGTTTGCGAAAGAACAATGAACATACGGCATCGTTTTTTTTGTATGTA
GACCCTCAGCCCCGACAAGGGACGGAGATGAAAAGAACCAACGCACTCTC
TGATATATCCCATGGTGAAAACGCCAACAGCTCCCGAACGTTGTCGGGGT
CTCTGTATTACAGTAAAATAGCAGAACAAGGAGAGAGCGACATGTCTCGA
ACGCAGCCATGGCTCCGCGGTAAATCAGCTGGAGAACACGCATACCCCCC
TCCGTCCAACCCCGCATCGCAAACCAGGTCCACCTTGGTCTGGCGAGAAA
TGCTTTGTCTTCGGCCTCGTCGGCGAGCGCAGCACCCATGCCCGCGCTTG
GCGGTAGCGCCAGCGGCGGGACCAACGCGGGCGGAGGCGGCGACGTCGGC
AGTGCGGACTTGGTGCGGATCGGGACGGTCGTGAAGGATCGGCGGACGGT
GCAGGACATCGAGGAAGAATCGAGAAAACGGCGCCGTCGCTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8023:2256..4451+

>mRNA_Ecto-sp13_S_contig8023.19344.1 ID=mRNA_Ecto-sp13_S_contig8023.19344.1|Name=mRNA_Ecto-sp13_S_contig8023.19344.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8023:2256..4451+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTCCGGACACAGGCACCCCCGCTGGTGCCGCCGCACCAGCCTTA
TTCTTTGGCATACAGCAACAACTCGAATACACCAGCGCCCTCGCCGCCAC
GGTCTGCATCGAGTAGTAGAAACAGTATTAGTAATAGTGGGGGTGGTGGT
GCTAGTGGTGGCGGCGGTAGCGGCGGCAGCGGCGGCGGCGAAGAAAAGGA
GCCGGCAGCATCGCTCGGAGGTTTCCTGGGGTCACTGATGGGCAGCATGG
ACCAGACTCACAAAAGCGTGGCCGGCACGGCAGCGGTGGACAGAGCGAAC
CGGGCGCAAGATCAGGCAATCAAGCAGCGCGTTTCAAACTTCGAAGCAGA
AGTGCGAGAGAAGATAGCGGTATTTTCGACGAACGCCGAAGCCATCTCTC
ACACGTTCCCCCACGTTGAGAAGAGCCTTCGGTCGATTCAGCACAGTCTT
GCCGAAGACTTTGATGGCATCACCTCGAGAACGGAGGGAGAGTTGGACGA
CAGACGTGTGGTCTTGTACAAGCTGGGCTACGAGCCACCAGAGGAAGAGG
TCCAGGTGGACGCGCAGGTCCACCTTGGTCTGGCGAGAAATGCTTTGTCT
TCGGCCTCGTCGGCGAGCGCAGCACCCATGCCCGCGCTTGGCGGTAGCGC
CAGCGGCGGGACCAACGCGGGCGGAGGCGGCGACGTCGGCAGTGCGGACT
TGGTGCGGATCGGGACGGTCGTGAAGGATCGGCGGACGGTGCAGGACATC
GAGGAAGAATCGAGAAAACGGCGCCGTCGCTGTTGA
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