prot_Ecto-sp13_S_contig80224.19343.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig80224.19343.1
Unique Nameprot_Ecto-sp13_S_contig80224.19343.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length66
Homology
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.680e-28
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV
Sbjct:  144 KALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.830e-22
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFSLFGNILSCKVATDDAG SKGYGYVHYE   SAN AIAKI+GM++ GKQV
Sbjct:  165 KALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A0L0C540_LUCCU (Polyadenylate-binding protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0C540_LUCCU)

HSP 1 Score: 89.7 bits (221), Expect = 2.170e-19
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 66
            +A+YDTFS FGNILSCKVATDD G+SKGYG+VH+E   +AN AIAK+NGML+ GK+V + ++ PR
Sbjct:  113 KAIYDTFSAFGNILSCKVATDDKGQSKGYGFVHFETEEAANKAIAKVNGMLLNGKKVYVGKFIPR 177          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.960e-19
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFSLFGNILSCKVA D  G SKGYGYVHYE   +AN AIAKINGMLIAG +V
Sbjct:  130 KALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A2G9TFR5_TELCI (RRM domain-containing protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TFR5_TELCI)

HSP 1 Score: 83.2 bits (204), Expect = 3.720e-19
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +++YDTFSLFGNILSCKVA D+ G SKGYG+VH+E   +A  AI K+NGML+AGK+V
Sbjct:   48 KSIYDTFSLFGNILSCKVAVDEEGNSKGYGFVHFETDEAAQSAINKVNGMLLAGKKV 104          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A7S0ETD6_9EUKA (Polyadenylate-binding protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETD6_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 3.980e-19
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFS FGNILSCKVATDD G SKGYG+VHYE   +AN+A+ K+NGML+ GK+V
Sbjct:   57 KALYDTFSAFGNILSCKVATDDQGASKGYGFVHYETQEAANLAVTKVNGMLLNGKKV 113          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A368F327_ANCCA (Uncharacterized protein n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368F327_ANCCA)

HSP 1 Score: 84.7 bits (208), Expect = 4.940e-19
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 66
            +++YDTFSLFGNILSCKVA D+ G SKGYG+VH+E   +A  AI K+NGML+AGK+V + ++ PR
Sbjct:   42 KSIYDTFSLFGNILSCKVAVDEEGNSKGYGFVHFETEEAAQSAINKVNGMLLAGKKVFVGKFQPR 106          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A226NNP6_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226NNP6_COLVI)

HSP 1 Score: 88.2 bits (217), Expect = 5.680e-19
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFSLFGNILSCKVA D+AG SKGYG+VHYE   S  +AI K+NGMLI GK V
Sbjct:   88 KALYDTFSLFGNILSCKVAVDEAGNSKGYGFVHYENEESGRVAIEKVNGMLIGGKTV 144          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A6A5AH64_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH64_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.870e-19
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 59
            +ALYDTFSLFGNILSCKVA D  G SKGYGYVHYE   +A +AI KINGMLIAG +V
Sbjct:  137 KALYDTFSLFGNILSCKVAYDLNGNSKGYGYVHYETAEAAYLAIEKINGMLIAGTEV 193          
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A5N5SUB9_9CRUS (Polyadenylate-binding protein n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5SUB9_9CRUS)

HSP 1 Score: 88.2 bits (217), Expect = 7.540e-19
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 0
Query:    3 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 66
            +A+YDTFS FGNILSCKVAT+D G SKGYG+VH+E   SAN AI K+NGML+ GK+V + R+ PR
Sbjct:  112 KAIYDTFSAFGNILSCKVATEDNGNSKGYGFVHFETEKSANTAIEKVNGMLMGGKKVFVARFIPR 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI4.680e-2898.25Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA5.830e-2282.46Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A0L0C540_LUCCU2.170e-1966.15Polyadenylate-binding protein n=3 Tax=Lucilia TaxI... [more]
A0A2D4BDJ5_PYTIN2.960e-1978.95Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
A0A2G9TFR5_TELCI3.720e-1966.67RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S0ETD6_9EUKA3.980e-1971.93Polyadenylate-binding protein n=1 Tax=Phaeocystis ... [more]
A0A368F327_ANCCA4.940e-1961.54Uncharacterized protein n=1 Tax=Ancylostoma caninu... [more]
A0A226NNP6_COLVI5.680e-1973.68Uncharacterized protein n=1 Tax=Colinus virginianu... [more]
A0A6A5AH64_9STRA6.870e-1975.44Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A5N5SUB9_9CRUS7.540e-1966.15Polyadenylate-binding protein n=2 Tax=Armadillidiu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..66
e-value: 3.4E-14
score: 54.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 3..59
e-value: 3.5E-12
score: 45.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..66
score: 12.407
NoneNo IPR availablePANTHERPTHR24012RNA BINDING PROTEINcoord: 4..59
NoneNo IPR availablePANTHERPTHR24012:SF712POLYADENYLATE-BINDING PROTEINcoord: 4..59
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80224contigEcto-sp13_S_contig80224:172..369 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80224.19343.1mRNA_Ecto-sp13_S_contig80224.19343.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig80224 142..369 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig80224.19343.1 ID=prot_Ecto-sp13_S_contig80224.19343.1|Name=mRNA_Ecto-sp13_S_contig80224.19343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKIN
GMLIAGKQVIFRYSPR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf