mRNA_Ecto-sp13_S_contig80224.19343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80224.19343.1
Unique NamemRNA_Ecto-sp13_S_contig80224.19343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: D8LTD5_ECTSI (Polyadenylate-binding protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD5_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 5.220e-28
Identity = 58/68 (85.29%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            F +N       +ALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV
Sbjct:  133 FVKNLDETVDNKALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 200
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A835YVH9_9STRA (Polyadenylate-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH9_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.850e-22
Identity = 49/68 (72.06%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            F +N       +ALYDTFSLFGNILSCKVATDDAG SKGYGYVHYE   SAN AIAKI+GM++ GKQV
Sbjct:  154 FVKNLDETIDNKALYDTFSLFGNILSCKVATDDAGNSKGYGYVHYETAESANEAIAKIDGMVVGGKQV 221
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A2G9TFR5_TELCI (RRM domain-containing protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9TFR5_TELCI)

HSP 1 Score: 84.7 bits (208), Expect = 1.380e-19
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            F +N   V   +++YDTFSLFGNILSCKVA D+ G SKGYG+VH+E   +A  AI K+NGML+AGK+V
Sbjct:   37 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAVDEEGNSKGYGFVHFETDEAAQSAINKVNGMLLAGKKV 104
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A368F327_ANCCA (Uncharacterized protein n=1 Tax=Ancylostoma caninum TaxID=29170 RepID=A0A368F327_ANCCA)

HSP 1 Score: 86.3 bits (212), Expect = 1.860e-19
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 228
            F +N   V   +++YDTFSLFGNILSCKVA D+ G SKGYG+VH+E   +A  AI K+NGML+AGK+V + ++ PR
Sbjct:   31 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAVDEEGNSKGYGFVHFETEEAAQSAINKVNGMLLAGKKVFVGKFQPR 106
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A0L0C540_LUCCU (Polyadenylate-binding protein n=3 Tax=Lucilia TaxID=7374 RepID=A0A0L0C540_LUCCU)

HSP 1 Score: 89.4 bits (220), Expect = 4.490e-19
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   37 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 228
            +A+YDTFS FGNILSCKVATDD G+SKGYG+VH+E   +AN AIAK+NGML+ GK+V + ++ PR
Sbjct:  113 KAIYDTFSAFGNILSCKVATDDKGQSKGYGFVHFETEEAANKAIAKVNGMLLNGKKVYVGKFIPR 177
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A2D4BDJ5_PYTIN (Polyadenylate-binding protein n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BDJ5_PYTIN)

HSP 1 Score: 89.0 bits (219), Expect = 6.110e-19
Identity = 45/57 (78.95%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   37 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            +ALYDTFSLFGNILSCKVA D  G SKGYGYVHYE   +AN AIAKINGMLIAG +V
Sbjct:  130 KALYDTFSLFGNILSCKVAIDINGNSKGYGYVHYETAEAANEAIAKINGMLIAGTEV 186
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A7S0ETD6_9EUKA (Polyadenylate-binding protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ETD6_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 8.230e-19
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   37 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            +ALYDTFS FGNILSCKVATDD G SKGYG+VHYE   +AN+A+ K+NGML+ GK+V
Sbjct:   57 KALYDTFSAFGNILSCKVATDDQGASKGYGFVHYETQEAANLAVTKVNGMLLNGKKV 113
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A0R3PL42_ANGCS (Polyadenylate-binding protein n=2 Tax=Angiostrongylus TaxID=6312 RepID=A0A0R3PL42_ANGCS)

HSP 1 Score: 88.2 bits (217), Expect = 1.140e-18
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV-IFRYSPR 228
            F +N   V   +++YDTFSLFGNILSCKVA DD G SKGYG+VH+E   +A  AI K+NGML+AGK+V + ++ PR
Sbjct:  110 FIKNLDKVIDNKSIYDTFSLFGNILSCKVAVDDEGNSKGYGFVHFETDEAAQCAIDKVNGMLLAGKKVFVGKFQPR 185
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A226NNP6_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226NNP6_COLVI)

HSP 1 Score: 87.8 bits (216), Expect = 1.180e-18
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   37 QALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            +ALYDTFSLFGNILSCKVA D+AG SKGYG+VHYE   S  +AI K+NGMLI GK V
Sbjct:   88 KALYDTFSLFGNILSCKVAVDEAGNSKGYGFVHYENEESGRVAIEKVNGMLIGGKTV 144
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BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Match: A0A7J6RF44_PEROL (Protein phosphatase PP2A regulatory subunit B n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RF44_PEROL)

HSP 1 Score: 85.1 bits (209), Expect = 1.230e-18
Identity = 42/68 (61.76%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    4 FYRNAHAVAMLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKINGMLIAGKQV 207
            F +N       +ALYDTFSLFGNILSCKVATDD G+S+GYG+VH+E   SA  AI+K+NGM+I  K V
Sbjct:  132 FVKNLDKTIDNKALYDTFSLFGNILSCKVATDDDGKSRGYGFVHFENDESAQKAISKLNGMMIGDKAV 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80224.19343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTD5_ECTSI5.220e-2885.29Polyadenylate-binding protein n=2 Tax=Ectocarpus T... [more]
A0A835YVH9_9STRA8.850e-2272.06Polyadenylate-binding protein n=1 Tax=Tribonema mi... [more]
A0A2G9TFR5_TELCI1.380e-1960.29RRM domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A368F327_ANCCA1.860e-1956.58Uncharacterized protein n=1 Tax=Ancylostoma caninu... [more]
A0A0L0C540_LUCCU4.490e-1966.15Polyadenylate-binding protein n=3 Tax=Lucilia TaxI... [more]
A0A2D4BDJ5_PYTIN6.110e-1978.95Polyadenylate-binding protein n=2 Tax=Pythium TaxI... [more]
A0A7S0ETD6_9EUKA8.230e-1971.93Polyadenylate-binding protein n=1 Tax=Phaeocystis ... [more]
A0A0R3PL42_ANGCS1.140e-1857.89Polyadenylate-binding protein n=2 Tax=Angiostrongy... [more]
A0A226NNP6_COLVI1.180e-1873.68Uncharacterized protein n=1 Tax=Colinus virginianu... [more]
A0A7J6RF44_PEROL1.230e-1861.76Protein phosphatase PP2A regulatory subunit B n=3 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80224contigEcto-sp13_S_contig80224:142..369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score115.2
Seed ortholog evalue1.2e-23
Seed eggNOG ortholog2880.D8LTD5
Preferred namePAB1
Model size228
KEGG koko:K13126
KEGG Pathwayko03013,ko03015,ko03018,map03013,map03015,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003727,GO:0003729,GO:0004857,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0005840,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008428,GO:0009889,GO:0009894,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010608,GO:0015031,GO:0015833,GO:0015931,GO:0019219,GO:0019222,GO:0030234,GO:0031323,GO:0031326,GO:0031329,GO:0031503,GO:0032268,GO:0032991,GO:0033036,GO:0034248,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044092,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051641,GO:0051649,GO:0060211,GO:0060255,GO:0061013,GO:0065007,GO:0065009,GO:0070717,GO:0070727,GO:0071014,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0098772,GO:1900151,GO:1901363,GO:1903311,GO:1990841,GO:1990904,GO:2000112
Exons1
EggNOG free text desc.RNA binding
EggNOG OGsKOG0123@1,KOG0123@2759
Cds size198
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464075.3198373-UTR-Ecto-sp13_S_contig80224:141..1711681464075.3198373-UTR-Ecto-sp13_S_contig80224:141..171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig80224 142..171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464075.3392832-CDS-Ecto-sp13_S_contig80224:171..3691681464075.3392832-CDS-Ecto-sp13_S_contig80224:171..369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80224 172..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80224.19343.1prot_Ecto-sp13_S_contig80224.19343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80224 172..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80224.19343.1

>prot_Ecto-sp13_S_contig80224.19343.1 ID=prot_Ecto-sp13_S_contig80224.19343.1|Name=mRNA_Ecto-sp13_S_contig80224.19343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MLQALYDTFSLFGNILSCKVATDDAGESKGYGYVHYEGGVSANMAIAKIN
GMLIAGKQVIFRYSPR
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mRNA from alignment at Ecto-sp13_S_contig80224:142..369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80224.19343.1 ID=mRNA_Ecto-sp13_S_contig80224.19343.1|Name=mRNA_Ecto-sp13_S_contig80224.19343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80224:142..369+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTATCGTAACGCGCACGCTGTGGCGATGCTGCAGGCCCTGTACGA
CACGTTCTCCCTGTTTGGGAACATCCTGTCGTGCAAAGTTGCCACCGATG
ATGCCGGCGAGAGCAAGGGCTACGGCTACGTCCACTACGAGGGCGGGGTG
TCGGCCAACATGGCCATCGCCAAGATCAACGGCATGCTCATCGCCGGGAA
GCAGGTGATATTCCGCTATTCGCCAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80224:142..369+

>mRNA_Ecto-sp13_S_contig80224.19343.1 ID=mRNA_Ecto-sp13_S_contig80224.19343.1|Name=mRNA_Ecto-sp13_S_contig80224.19343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80224:142..369+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCAGGCCCTGTACGACACGTTCTCCCTGTTTGGGAACATCCTGTC
GTGCAAAGTTGCCACCGATGATGCCGGCGAGAGCAAGGGCTACGGCTACG
TCCACTACGAGGGCGGGGTGTCGGCCAACATGGCCATCGCCAAGATCAAC
GGCATGCTCATCGCCGGGAAGCAGGTGATATTCCGCTATTCGCCAAGG
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