mRNA_Ecto-sp13_S_contig8020.19340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: D7FMB4_ECTSI (RRM_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB4_ECTSI) HSP 1 Score: 1072 bits (2773), Expect = 0.000e+0 Identity = 709/949 (74.71%), Postives = 719/949 (75.76%), Query Frame = 2
Query: 2 VFSAQQTPHRVQSSTNLDLVDCVGSDLLLAMNNLDVNEQQARACANLANNGCHHGLLESSPGAGSXXXXXXXXXXXXXXXXXXXXXXXXARQPSWLTAQQQQARVQNEHFPSSSRGSLYGCDSGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGSPGALPPPGFGLDSCSSVGSWNGSTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGNPHLDESWTAVLNAPAGAELMEFLTERPSRALVLWNVESIGEDELRAVCERHGPLYYLRAEHHRKRVIFVAYYDVRDAVNAHRSLGSELSK-YLSEEHGARPRPAVHFSIELHAGFSYKEGSVVAHDLPAQVTEAEVGSVFQVYGDLRRVAQHHAYPSSFSVEFCSIQDARVAAQELTVRNPWGHGITVEPAVRAEAERALGKKLHATLNRWTAESAQVHEDRMRSSSSSIVMSGRSSDSDSPPPKPERDYIRGMGFIMDLHTPMTSMNTTPXXXXXXXXPSGADAHQNGGSKSPGVHHYMTMPLRQQHAHGRGTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHHFHRNGHRAHMDSGKPHPLASPLGGPAPYGPPSSSSSPGCNGYFVDVSPGYHGDHDDTRTPPAPMWAAAASVSPPSGHVGNGGMRGSPPLRGMPGGCAGAGGLGYKDVRTRQMSLDEARLQHGNSGXXXXXXARSVRCNSDSSSQILMAASSPHSAGPECSGNGGHEFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRAVLPPGXXXXXXXVFGVRDRERSVSNSSTLSMS 2845
VF+AQQTPHRVQSSTNLDLVDCVGSDLLLAMNNLDV EQQARACANLANNGCHHGLLE PGAGS XXXXXXXXXXXXX XXXXXXARQPSWLTAQQQQARVQNEHFPSSSRGSLYGCDSGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RGSPGALPPPGFGLDSCSSVGSWNGSTNSXXXXXXXXXXXXXXXXXXXXXXXX GGNPHLDESWTAVLNAPAGAELMEFLTERPSRALVLWNVE+IGEDELRA CE HGPLYYLRAEH RKRVIFVAYYDVRDAVNAHRSLG+ELS YL +EHGARPRPAVHFSIELHAGFSYKEGSVVAHDLPAQVTEAEVGSVFQVYGDLRRVAQHHA+PSSFSVEFCSIQDARVAAQELTVRNPWGHGITVEPAVR+EAE+ALGKKLHATLNRWTAES QV+EDRMRSSSSSIVMSGRSSDSDSPPPKPER P R A S P C GGMRGSPPLRGMPGGCAGAGGLGYKDVRTRQMSLDEARLQHGNSGXXXXXX R+VRCNSDSSSQILMAASSPHSAGPECSGNGGHEFSLDLKKV +MVRNIPNKYTQ MLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRAVL PG VFGVRDRERSVSNSS LSMS
Sbjct: 38 VFAAQQTPHRVQSSTNLDLVDCVGSDLLLAMNNLDVGEQQARACANLANNGCHHGLLEGGPGAGSPXXXXXXXXXXXXXLPLAXXXXXXARQPSWLTAQQQQARVQNEHFPSSSRGSLYGCDSGEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS--RGSPGALPPPGFGLDSCSSVGSWNGSTNSXXXXXXXXXXXXXXXXXXXXXXXX------GGNPHLDESWTAVLNAPAGAELMEFLTERPSRALVLWNVEAIGEDELRAACEGHGPLYYLRAEHRRKRVIFVAYYDVRDAVNAHRSLGAELSSNYLMDEHGARPRPAVHFSIELHAGFSYKEGSVVAHDLPAQVTEAEVGSVFQVYGDLRRVAQHHAHPSSFSVEFCSIQDARVAAQELTVRNPWGHGITVEPAVRSEAEKALGKKLHATLNRWTAESTQVYEDRMRSSSSSIVMSGRSSDSDSPPPKPER-----------------------------------------------------TPTRMVEA-------------------------------------------------------------------------------------SRPEC-----------------------------------------GGMRGSPPLRGMPGGCAGAGGLGYKDVRTRQMSLDEARLQHGNSGXXXXXXXRTVRCNSDSSSQILMAASSPHSAGPECSGNGGHEFSLDLKKVSKGMDKRTTIMVRNIPNKYTQMMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRAVLAPGGGGGG--VFGVRDRERSVSNSSALSMS 797
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A836C7Y7_9STRA (RNA recognition motif 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Y7_9STRA) HSP 1 Score: 234 bits (598), Expect = 3.320e-68 Identity = 110/154 (71.43%), Postives = 130/154 (84.42%), Query Frame = 2
Query: 2300 EFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRAVLPP 2761
EF+LD+ K+ +M+RNIPNKYTQ MLLQEI+ ++ A+DFFYLPIDFKN+CNVGYAFINF+D+RRI+ F REF+ QRW+NFNSEKVCAISYARIQGKASMI RFQNSSLMEKDGEYRPL+F+S+GP+RGRPEPFP +K R V PP
Sbjct: 8 EFALDIGKIAKGLDKRTTIMIRNIPNKYTQAMLLQEINVNFLEAFDFFYLPIDFKNRCNVGYAFINFIDFRRIIAFTREFHGQRWRNFNSEKVCAISYARIQGKASMICRFQNSSLMEKDGEYRPLLFYSSGPDRGRPEPFPLGTKQRRIVTPP 161
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A836CK27_9STRA (RNA recognition motif 2-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK27_9STRA) HSP 1 Score: 209 bits (531), Expect = 1.430e-59 Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 2
Query: 2309 LDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIF 2683
LD KK+ +M+RNIPNKYTQ MLLQEID+++RG YDFFYLPIDFKN+CNVGYAFINF+D+RRIV F REF+ QRW+NFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPL+F
Sbjct: 1 LDTKKIAKGQDRRTTIMIRNIPNKYTQAMLLQEIDANFRGGYDFFYLPIDFKNRCNVGYAFINFIDFRRIVSFTREFHGQRWRNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLLF 125
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A7S2V2F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F9_9STRA) HSP 1 Score: 210 bits (535), Expect = 1.920e-59 Identity = 99/150 (66.00%), Postives = 121/150 (80.67%), Query Frame = 2
Query: 2300 EFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAYRA 2749
+F LD+K+V +MVRNIPNKYTQ MLLQEI+ +++ YDFFYLPIDFKNKCNVGYAFINF+ IV F+ EFN ++WKNFNSEKVC ISYARIQGK+SMISRFQNSSLM+KDGE++PL+FHS+G +G+PE FP + K R+
Sbjct: 20 DFKLDVKRVLARSDQRTTVMVRNIPNKYTQQMLLQEINVNHKETYDFFYLPIDFKNKCNVGYAFINFISPLSIVEFYEEFNGRKWKNFNSEKVCCISYARIQGKSSMISRFQNSSLMDKDGEFQPLLFHSSGSNKGKPEKFPIAGKTKRS 169
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A7S2SS48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS48_9STRA) HSP 1 Score: 227 bits (579), Expect = 1.360e-58 Identity = 106/145 (73.10%), Postives = 124/145 (85.52%), Query Frame = 2
Query: 2300 EFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASS 2734
EFSL++ +V LMVRNIPNKYTQ +L+EI+ +++G YDFFYLPIDFKNKCNVGYAF+NF+D+R IV FF +FN +RW NFNSEKVCAI+YARIQGK SMISRFQNSSLMEKDGEYRPL+FHS+GPE+GRPEPFP SS
Sbjct: 727 EFSLNIDRVMQGSDRRTTLMVRNIPNKYTQAAVLEEINENFQGLYDFFYLPIDFKNKCNVGYAFMNFIDFRSIVSFFCKFNGRRWNNFNSEKVCAITYARIQGKTSMISRFQNSSLMEKDGEYRPLLFHSSGPEKGRPEPFPTSS 871
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A482RU13_9ARCH (RRM domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RU13_9ARCH) HSP 1 Score: 206 bits (523), Expect = 9.200e-58 Identity = 92/151 (60.93%), Postives = 125/151 (82.78%), Query Frame = 2
Query: 2285 GNGGHEFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSK 2737
G G +F+LDL++++ + LMVRNIPNKY+Q MLL+E+++ ++G YDFFYLPIDFKN+CNVGYAFINF+ IV F R F QRW++FNSEK+C+++YARIQGKA+++SRFQNSSL++KD Y+PL+F S+GP++G+PEPFPA SK
Sbjct: 24 GEGVGDFALDLQRLQDGSETRTTLMVRNIPNKYSQQMLLEEVNAQHQGQYDFFYLPIDFKNRCNVGYAFINFLSPLHIVDFVRRFEGQRWRSFNSEKICSVTYARIQGKAALVSRFQNSSLLDKDDTYKPLLFRSSGPDQGQPEPFPAPSK 174
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A4D9D2V8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2V8_9STRA) HSP 1 Score: 227 bits (578), Expect = 1.440e-57 Identity = 104/149 (69.80%), Postives = 128/149 (85.91%), Query Frame = 2
Query: 2291 GGHEFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSK 2737
G EF LD++++ +MVRN+PNKY+Q +LL EI+++++G YDFFYLPIDFKNKCNVGYAFINF++ + IVPFF+EFN QRW+NFNSEKVCAISYARIQGK SMISRF NSSLMEKDGEYRPL+F+S+GP+RG+PEPFP+S K
Sbjct: 1103 GDTEFHLDVERILMGMDRRTTIMVRNVPNKYSQQLLLNEINATHKGKYDFFYLPIDFKNKCNVGYAFINFIEPKAIVPFFKEFNGQRWRNFNSEKVCAISYARIQGKQSMISRFSNSSLMEKDGEYRPLLFYSSGPDRGKPEPFPSSLK 1251
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A7S2BIN8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BIN8_9STRA) HSP 1 Score: 211 bits (536), Expect = 1.880e-56 Identity = 100/158 (63.29%), Postives = 123/158 (77.85%), Query Frame = 2
Query: 2285 GNGGH-----EFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPASSKAY 2743
GNG H EF L++ + +M+RNIPNKYTQ +L+EI+ ++G YDFFYLPIDFKNKCNVGYAFINF+++R IVPF +++ +RW NFNSEKVCAI+YARIQGKASMISRFQNSSLM+K GE+RPL+F STG RG PEPFPA S+ +
Sbjct: 247 GNGSHAIGDGEFGLNIDHIMQGVDRRTTVMIRNIPNKYTQMAVLEEINQHFKGTYDFFYLPIDFKNKCNVGYAFINFIEFRAIVPFVCKYHGRRWNNFNSEKVCAITYARIQGKASMISRFQNSSLMDKSGEFRPLLFQSTGVNRGLPEPFPACSQKF 404
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A7S3Y2P3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P3_HETAK) HSP 1 Score: 198 bits (504), Expect = 4.450e-55 Identity = 92/147 (62.59%), Postives = 114/147 (77.55%), Query Frame = 2
Query: 2288 NGGHEFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPA 2728
N E+SL+++++ +MVRNIPNKYTQ MLL EI++ + G YDFFYLPIDFKN+CNVGYAF+NF+ R I F R F+ QRW FNSEKVCAI+YAR+QG+ +MI+RFQNSSL+ K+G YRPL+FHS GP GRPEPFPA
Sbjct: 22 NPSPEYSLNMQQILDGADLRTTVMVRNIPNKYTQQMLLDEINAEFEGTYDFFYLPIDFKNRCNVGYAFVNFLSARTIPAFHRRFDGQRWGTFNSEKVCAIAYARLQGRRAMIARFQNSSLLAKEGRYRPLLFHSAGPLAGRPEPFPA 168
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Match: A0A3R7KLF4_9STRA (RRM_2 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KLF4_9STRA) HSP 1 Score: 204 bits (518), Expect = 3.800e-54 Identity = 97/146 (66.44%), Postives = 116/146 (79.45%), Query Frame = 2
Query: 2291 GGHEFSLDLKKVRWDPCSSRALMVRNIPNKYTQTMLLQEIDSSYRGAYDFFYLPIDFKNKCNVGYAFINFMDYRRIVPFFREFNAQRWKNFNSEKVCAISYARIQGKASMISRFQNSSLMEKDGEYRPLIFHSTGPERGRPEPFPA 2728
G EFSL +++V LM+RNIPNKYTQ MLL EI+ ++RG YDFFYLPIDFKNKCN+GYAFINF++ I F REF+ Q+W NFNSEKVCAISYAR+QGK +MI+RFQNSSL+EK YRPL+F S+GP RG+PEPFPA
Sbjct: 227 GTGEFSLSIERVASGEDMRTTLMIRNIPNKYTQQMLLAEINRNHRGNYDFFYLPIDFKNKCNMGYAFINFIEAAHIEAFHREFDGQKWTNFNSEKVCAISYARLQGKQAMIARFQNSSLLEKHESYRPLVFGSSGPNRGKPEPFPA 372 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8020.19340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8020.19340.1 >prot_Ecto-sp13_S_contig8020.19340.1 ID=prot_Ecto-sp13_S_contig8020.19340.1|Name=mRNA_Ecto-sp13_S_contig8020.19340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=919bp MNNLDVNEQQARACANLANNGCHHGLLESSPGAGSPPPQHPPPPGDGGFLback to top mRNA from alignment at Ecto-sp13_S_contig8020:426..7123+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8020.19340.1 ID=mRNA_Ecto-sp13_S_contig8020.19340.1|Name=mRNA_Ecto-sp13_S_contig8020.19340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8020:426..7123+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8020:426..7123+ >mRNA_Ecto-sp13_S_contig8020.19340.1 ID=mRNA_Ecto-sp13_S_contig8020.19340.1|Name=mRNA_Ecto-sp13_S_contig8020.19340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8020:426..7123+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |