mRNA_Ecto-sp13_S_contig80195.19338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80195.19338.1
Unique NamemRNA_Ecto-sp13_S_contig80195.19338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A6H5L4W0_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W0_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.430e-27
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH
Sbjct:   90 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 139
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: D8LRP2_ECTSI (Structural maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 7.920e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH
Sbjct: 1167 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 1216
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A8J9TE18_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TE18_PHATR)

HSP 1 Score: 93.2 bits (230), Expect = 1.890e-22
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct:   74 AYLSLDDAEEPYKGGIKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIH 123
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A7S1XW58_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW58_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.200e-22
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+L L+N +EPYLGGVK+NAMPPMKRFRDMEQLSGGEKT+AALGLLFAIH
Sbjct:   96 AYLMLENVDEPYLGGVKYNAMPPMKRFRDMEQLSGGEKTIAALGLLFAIH 145
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A7S2V1Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.720e-22
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+LSLD+ EEP+ GGVKFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct:   40 AYLSLDDQEEPFHGGVKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 89
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A7S2CTE2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTE2_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.810e-22
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+LSLD+ EEPYLGG+K+NAMPPMKRFRDMEQLSGGEKTVAAL  LF+IH
Sbjct:   36 AYLSLDDTEEPYLGGIKYNAMPPMKRFRDMEQLSGGEKTVAALAFLFSIH 85
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A7S2E6E8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6E8_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.490e-22
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+LSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct:   48 AYLSLDDAEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 97
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A482SLG8_9ARCH (SMC_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLG8_9ARCH)

HSP 1 Score: 89.4 bits (220), Expect = 8.280e-22
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+L++DN +EP+LGGV+F AMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct:    8 AYLTVDNTDEPFLGGVRFTAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 57
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A7S2SBG7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SBG7_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.100e-22
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            AFLSLD+ EEPY GG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct:  145 AFLSLDDSEEPYRGGMKFNAMPPMKRFRDMEQLSGGEKTVAALSLLFAIH 194
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BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Match: A0A6T7JRG2_9STRA (Structural maintenance of chromosomes protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JRG2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.900e-21
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH 150
            A+LSLD+ EEPYLGG+KFNAMPPMKRFRDMEQLSGGEKTVAAL LLFAIH
Sbjct: 1151 AYLSLDDTEEPYLGGMKFNAMPPMKRFRDMEQLSGGEKTVAALALLFAIH 1200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80195.19338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4W0_9PHAE6.430e-27100.00SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LRP2_ECTSI7.920e-25100.00Structural maintenance of chromosomes protein n=1 ... [more]
A0A8J9TE18_PHATR1.890e-2288.00Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A7S1XW58_9STRA2.200e-2286.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2V1Q0_9STRA3.720e-2288.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CTE2_9STRA3.810e-2284.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2E6E8_9STRA4.490e-2288.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A482SLG8_9ARCH8.280e-2282.00SMC_N domain-containing protein n=1 Tax=archaeon T... [more]
A0A7S2SBG7_9STRA9.100e-2290.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6T7JRG2_9STRA1.900e-2190.00Structural maintenance of chromosomes protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80195contigEcto-sp13_S_contig80195:456..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.1
Seed ortholog evalue9.4e-21
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
Model size150
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
Exons1
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
Cds size150
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.5249443-CDS-Ecto-sp13_S_contig80195:455..6051681464074.5249443-CDS-Ecto-sp13_S_contig80195:455..605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80195 456..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80195.19338.1prot_Ecto-sp13_S_contig80195.19338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80195 456..605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80195.19338.1

>prot_Ecto-sp13_S_contig80195.19338.1 ID=prot_Ecto-sp13_S_contig80195.19338.1|Name=mRNA_Ecto-sp13_S_contig80195.19338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
AFLSLDNPEEPYLGGVKFNAMPPMKRFRDMEQLSGGEKTVAALGLLFAIH
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mRNA from alignment at Ecto-sp13_S_contig80195:456..605-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80195.19338.1 ID=mRNA_Ecto-sp13_S_contig80195.19338.1|Name=mRNA_Ecto-sp13_S_contig80195.19338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80195:456..605- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCCTGAGCCTCGACAACCCGGAGGAGCCGTACCTTGGAGGAGTCAA
GTTCAACGCCATGCCCCCAATGAAGCGCTTCCGCGACATGGAGCAGCTGT
CGGGCGGCGAGAAGACAGTGGCGGCGCTCGGCCTCCTTTTCGCGATACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80195:456..605-

>mRNA_Ecto-sp13_S_contig80195.19338.1 ID=mRNA_Ecto-sp13_S_contig80195.19338.1|Name=mRNA_Ecto-sp13_S_contig80195.19338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80195:456..605- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTTCCTGAGCCTCGACAACCCGGAGGAGCCGTACCTTGGAGGAGTCAA
GTTCAACGCCATGCCCCCAATGAAGCGCTTCCGCGACATGGAGCAGCTGT
CGGGCGGCGAGAAGACAGTGGCGGCGCTCGGCCTCCTTTTCGCGATACAC
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