mRNA_Ecto-sp13_S_contig80189.19336.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80189.19336.1
Unique NamemRNA_Ecto-sp13_S_contig80189.19336.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80189.19336.1 vs. uniprot
Match: D7FNR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR1_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.700e-21
Identity = 49/75 (65.33%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 MGKKLGHPRAAPDGHLAKYEEAHGSGNLRTISLLRV-KVRSNKVPP-VILLFTLSASTRASSGIGRKKAGNLQSE 219
            MG KLGHPRAAP+GHLAKYEEAH    +   +L +V + R+N+V   V+LLF L ASTRAS G+GRKKAGNLQSE
Sbjct:    1 MGNKLGHPRAAPNGHLAKYEEAHKEVEICGQTLRQVSRFRTNRVQEAVMLLFALGASTRASFGVGRKKAGNLQSE 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80189.19336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNR1_ECTSI1.700e-2165.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80189contigEcto-sp13_S_contig80189:65..286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.4632332-CDS-Ecto-sp13_S_contig80189:64..2861681464074.4632332-CDS-Ecto-sp13_S_contig80189:64..286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80189 65..286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80189.19336.1prot_Ecto-sp13_S_contig80189.19336.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80189 65..286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80189.19336.1

>prot_Ecto-sp13_S_contig80189.19336.1 ID=prot_Ecto-sp13_S_contig80189.19336.1|Name=mRNA_Ecto-sp13_S_contig80189.19336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MGKKLGHPRAAPDGHLAKYEEAHGSGNLRTISLLRVKVRSNKVPPVILLF
TLSASTRASSGIGRKKAGNLQSE*
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mRNA from alignment at Ecto-sp13_S_contig80189:65..286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80189.19336.1 ID=mRNA_Ecto-sp13_S_contig80189.19336.1|Name=mRNA_Ecto-sp13_S_contig80189.19336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80189:65..286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAAGAAGCTTGGCCACCCCCGAGCTGCGCCAGACGGCCATCTTGC
AAAGTATGAAGAGGCCCACGGAAGTGGAAATCTGCGGACAATCTCTTTGT
TAAGAGTCAAGGTCCGAAGCAACAAGGTGCCACCGGTGATATTGTTGTTC
ACCCTGAGTGCAAGCACAAGGGCATCTTCTGGGATAGGCCGCAAGAAGGC
GGGGAATCTGCAGAGCGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80189:65..286+

>mRNA_Ecto-sp13_S_contig80189.19336.1 ID=mRNA_Ecto-sp13_S_contig80189.19336.1|Name=mRNA_Ecto-sp13_S_contig80189.19336.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80189:65..286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAAAGAAGCTTGGCCACCCCCGAGCTGCGCCAGACGGCCATCTTGC
AAAGTATGAAGAGGCCCACGGAAGTGGAAATCTGCGGACAATCTCTTTGT
TAAGAGTCAAGGTCCGAAGCAACAAGGTGCCACCGGTGATATTGTTGTTC
ACCCTGAGTGCAAGCACAAGGGCATCTTCTGGGATAGGCCGCAAGAAGGC
GGGGAATCTGCAGAGCGAGTAA
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