mRNA_Ecto-sp13_S_contig8016.19335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8016.19335.1
Unique NamemRNA_Ecto-sp13_S_contig8016.19335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8016.19335.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 3.190e-61
Identity = 132/165 (80.00%), Postives = 134/165 (81.21%), Query Frame = 1 
Query:    1 GAGGSVVGLLTLGTAEEAVESRVRRGLLGEALDLATACGLDAGGVRAGLWRRAVEGGSFSEDDVRQHLAGVSDHRWVVKEALARIGLAATEPAASAILGEGLRRCDFLLPTDSRGERSSSEEQSXXXXXXXEAAEERPTASGGDGWDFDDDAXXXXDSGDAPRAA 495
            GAGGSVVGLLTLGTAEEAVESRVRRGLLGEALDLATACGLDAG VRAGLWRRAVE GSFSEDDV+QHLAGVSDHRWVVKEALA IGLAATE AA+AIL EGLRRCDFLLP  S G  SSS    XXXXXXX            DGWDFD   XXX D GDAPRAA
Sbjct:  581 GAGGSVVGLLTLGTAEEAVESRVRRGLLGEALDLATACGLDAGSVRAGLWRRAVERGSFSEDDVQQHLAGVSDHRWVVKEALAGIGLAATESAAAAILAEGLRRCDFLLPAHSTGWGSSSXXXXXXXXXXXXXXXXXXXXXXXDGWDFDXXXXXXGDLGDAPRAA 745
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8016.19335.1 vs. uniprot
Match: A0A6H5JI52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI52_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.460e-25
Identity = 70/92 (76.09%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:  217 DHRWVVKEALARIGLAATEPAASAILGEGLRRCDFLLPTDSRGERSSSEEQSXXXXXXXEAAEERPTASGGDGWDFDDDAXXXXDSGDAPRA 492
            D RWVVKEALA IGLAATEPAASAIL EGLRRCDFLLP  SRG  SS     XXXXXXX  A+ERPTASGGDGWDF DDA    D  DAPRA
Sbjct:   33 DARWVVKEALAGIGLAATEPAASAILAEGLRRCDFLLPAHSRGWGSSXXXXXXXXXXXXXPAKERPTASGGDGWDFADDADDDGDVRDAPRA 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8016.19335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI3.190e-6180.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI52_9PHAE2.460e-2576.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8016contigEcto-sp13_S_contig8016:2124..4883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score215.3
Seed ortholog evalue2.2e-53
Seed eggNOG ortholog2880.D7FI79
Model size514
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2D0V1@1,2SFKQ@2759
Cds size510
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.4065466-CDS-Ecto-sp13_S_contig8016:2125..24111681464074.4065466-CDS-Ecto-sp13_S_contig8016:2125..2411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 2126..2411 -
1681464074.41897-CDS-Ecto-sp13_S_contig8016:3510..36291681464074.41897-CDS-Ecto-sp13_S_contig8016:3510..3629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 3511..3629 -
1681464074.4310198-CDS-Ecto-sp13_S_contig8016:4778..48831681464074.4310198-CDS-Ecto-sp13_S_contig8016:4778..4883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8016 4779..4883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8016.19335.1prot_Ecto-sp13_S_contig8016.19335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8016 2126..4883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8016.19335.1

>prot_Ecto-sp13_S_contig8016.19335.1 ID=prot_Ecto-sp13_S_contig8016.19335.1|Name=mRNA_Ecto-sp13_S_contig8016.19335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
GAGGSVVGLLTLGTAEEAVESRVRRGLLGEALDLATACGLDAGGVRAGLW
RRAVEGGSFSEDDVRQHLAGVSDHRWVVKEALARIGLAATEPAASAILGE
GLRRCDFLLPTDSRGERSSSEEQSADAAGGGEAAEERPTASGGDGWDFDD
DADDDGDSGDAPRAATAAPG
back to top

mRNA from alignment at Ecto-sp13_S_contig8016:2124..4883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8016.19335.1 ID=mRNA_Ecto-sp13_S_contig8016.19335.1|Name=mRNA_Ecto-sp13_S_contig8016.19335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8016:2124..4883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGGGGGGTCGGTGGTGGGGCTGTTGACGCTGGGCACGGCGGAGGA
GGCGGTGGAGAGCAGGGTGCGCCGCGGCTTGCTGGGAGAGGCGCTCGACC
TAGCAGTGAGTGTTTTTTATTTTTTGTTGTTGGTGTACAGCAGTAGGGAG
AGGTGTCACTGTTTCGGGCCAGGGTGTACCCAGACAATGCACTGCCTACG
CGAAAAGGTATGTTTGTTACGAAAAACGTCTAGGCAAGGGTGAACGCAGA
CCCTTATCCTAACCCCAAAATAGGCGATTCTATCCAAAATCCTGTAACCT
TGCTTACTTAAGAAAACCTGCGAGACCACTGCCGAAAATTCGCCGGCACT
ATTCAAAGTGCAGAATGAGCTGGGAATTTCAGCGTGTGCCCGCTGAACCA
CCGGCACTATACCGGACACCGGCACTATACAGGGACCTCAGCCGTAGTTT
TTTGTTCCTCGGAAGGGCAGGGATGGTGCGGGTAGCGACGAGGCTAGATG
GGGGGGGAAACGCGGTTGGCCTGCCTATGTTTAGCGCTCAATTGGGGGAC
AGCGGCGTCCTGTTGCCGGCTGGTGCAGTAGTAGTAGTAGTTGGAATGCT
GTGTTTCGGCCCTCCAAGCGTATAAAGCCGTGTACAGATGGAGCCACACT
TGAAGATCGCTGTTTCATTGAACGAGGTCGGTTTCTTGCTCAGCTTTATC
GGACCAGCTTTAGTGTTGGATTCTGTAGCTGAGCACCTGTTTTCTTACGG
TCAAGTTCTTCTTTTCGGGGCCGGACTTCTTTTCTTCGTGATTCGGAGCG
CTGCTGGTGTAGGGTTGGAGTGTTTTTGTCCTTTTCTTTTGTTCGGGGGT
CGTTTCGTCCCCTCTTTTCTGTGGGTGCGTGCCGGTCACCTTGCTTTTTT
TTGCGGTTTTCCACTCCACTCCCGCGCGAGCACGTACTTAATCATACAGT
CATGGCTCCCACATAAGGGGGTGGGGTGGCTAAGCCCCCGACCCTCGTAT
CTCGGAGCCCCCTCTACACTATGGCGCGTCGTGCACCTTACAAAGAATTT
CAACCCTCTTATCCCATTCCGGCCCTCTTGTGTCGGAGCCCCATCTTATT
TTCTAAGGTATATCGAAGCCACGACTGTACCTCTAACGCGTTGCTTTTGA
TTTGGGTTCAATTCCTCCTGAAGCCCTTCTGTCGTTGTTGAACGCTGGTT
TTGTCGATCAATCTCTCGATCGATCCCCACGGCCCCCCGCCACGCCCCAA
TCAGACGGCCTGTGGGCTGGACGCCGGGGGCGTGAGAGCCGGTCTTTGGC
GCAGGGCGGTCGAAGGAGGATCGTTCTCCGAGGACGACGTCCGACAGCAC
CTCGCCGGAGTCTCGGACCACAGGTGCGTGCCAGTGTTGTTCGATACATG
TATGCATACATCCCTGTTGATGTTGTTGGTGCTTGTGATGCTGGCTGTTG
TTGTTGATGATGTTGTTGTTGCTTTTGTTAGATGTTGTTTTTGTTAGATG
TTGCTAGTGTTGGTGCTGTACGTGGTGGTGGTGGTGTTGTTGTTGCTGGT
GGTGGTGATGTTGGTGTGAATTTTTCGCTCTTTTGCTGGAAGAGCGAAAT
CGACGAGCGCCTGATCCCAGTGCGGGTACTGCTCTACGTCCATGTTGTCG
TCTTTTCGTTGCATGTCATGTTCAGTTTTTATTTTTTGCGTTGATTCGCC
TACAGTCCCCAGGCTTAGATGAGGCTGATGTCCGTTTGTGTGATGAGTGG
CGAGATGCGGGCGGTAGAGCGGTCAGGAAGTGTTGGTGTTTGACCATCAA
TGACTGTCGTCGGTAGCGTGTACGTACGTTCCGGTGTCGGCAGCGGCGCA
AAGGAAGAACTCACTTCAGATTGTAGATTGTACGTAGACCTGCGTGTTTC
GGTGCGGCTAAAGTGCTTTGCCGTTTTTCTGCCGCCCCCGCATCCGGCGG
CTACCCTGGCGCCAGAATAGACGGGACGAACAGATATACACGTGCATTTC
TCTTCACCTGCTAGCGCTTCTGTTGAATCCAGAGAATAGCCTAGCCTCCC
AGGGTCGCAGATCATGGTAGCCTTTGGAACGCTTTCTGTTGTCAGCCGTA
TTGAGACTGACATCATTCAGCCGGTTAGCGCGGTCGATGTTAATATTAAT
AGTAAGGACACACATATGGCATCCGGCCTGTCTTTGCTTGCCACACCTTG
TGAAGAACATGAAGCTTGGCACGCGGCAGACGAAACGTTCCGGGTTGCCG
TCATCGATGTCGCAAGCAAGGGGCACGCGACAGCTCTCCTTTCTATCCCG
GCTCCGTCCTCTCGAGGAGACGCATTGTCACTGGTCTTGCAGAGAAGACA
TACAGAGCACGCCCCCCCCCCAAAACACAAACACAAACACATGAACTATG
GAGAAAACTGTCCCCCCTCCCCCAAACGTATCTAGTATTGAAGAGCATCG
CCCCCAACCTTGCGAAATCCAGGTGGGTCGTAAAAGAGGCGCTGGCGCGT
ATCGGTTTGGCTGCGACGGAGCCCGCGGCGTCAGCTATCCTCGGAGAGGG
GCTCCGCAGGTGCGATTTTCTCCTCCCCACTGACAGCAGGGGGGAGAGGT
CCTCCTCGGAAGAACAATCCGCCGATGCCGCCGGAGGCGGGGAGGCGGCA
GAAGAAAGGCCGACGGCGAGCGGCGGGGATGGGTGGGACTTCGACGACGA
TGCTGATGATGACGGAGACTCGGGGGATGCGCCGAGGGCGGCGACGGCTG
CGCCGGGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8016:2124..4883-

>mRNA_Ecto-sp13_S_contig8016.19335.1 ID=mRNA_Ecto-sp13_S_contig8016.19335.1|Name=mRNA_Ecto-sp13_S_contig8016.19335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8016:2124..4883- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGGGGGGTCGGTGGTGGGGCTGTTGACGCTGGGCACGGCGGAGGA
GGCGGTGGAGAGCAGGGTGCGCCGCGGCTTGCTGGGAGAGGCGCTCGACC
TAGCAACGGCCTGTGGGCTGGACGCCGGGGGCGTGAGAGCCGGTCTTTGG
CGCAGGGCGGTCGAAGGAGGATCGTTCTCCGAGGACGACGTCCGACAGCA
CCTCGCCGGAGTCTCGGACCACAGGTGGGTCGTAAAAGAGGCGCTGGCGC
GTATCGGTTTGGCTGCGACGGAGCCCGCGGCGTCAGCTATCCTCGGAGAG
GGGCTCCGCAGGTGCGATTTTCTCCTCCCCACTGACAGCAGGGGGGAGAG
GTCCTCCTCGGAAGAACAATCCGCCGATGCCGCCGGAGGCGGGGAGGCGG
CAGAAGAAAGGCCGACGGCGAGCGGCGGGGATGGGTGGGACTTCGACGAC
GATGCTGATGATGACGGAGACTCGGGGGATGCGCCGAGGGCGGCGACGGC
TGCGCCGGGG
back to top