mRNA_Ecto-sp13_S_contig8015.19333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Match: D7G564_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G564_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 2.550e-188 Identity = 259/269 (96.28%), Postives = 263/269 (97.77%), Query Frame = 1
Query: 4 SGGKVDGYQQAITGGFVWKPYGCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPKNVDVHGKAGSQDEQARGKQAGCPTGFYMDDGDDDAETSGGGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHRICQDHEDPSP 810
SGGKVDGYQQAITGG+VWKPY CRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPKNVDVHGKAGS+DEQARGKQAGCP GFYMDDGDDDAETSG GSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIA FFENLG+TLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHR+CQD EDP P
Sbjct: 338 SGGKVDGYQQAITGGYVWKPYDCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPKNVDVHGKAGSRDEQARGKQAGCPAGFYMDDGDDDAETSGDGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIARFFENLGKTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHRMCQDREDPGP 606
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Match: A0A6H5JQJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ9_9PHAE) HSP 1 Score: 456 bits (1173), Expect = 7.510e-150 Identity = 225/290 (77.59%), Postives = 237/290 (81.72%), Query Frame = 1
Query: 4 SGGKVDGYQQAITGGFVWKPYGCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPKNVDVHGK-AGSQDEQARGKQAGCPTGFYMDDGDDDAETSGGGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIE--------------------VNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHRICQDHEDPSP 810
SGGKVDGYQQAITGG+VWKPY CRY LNVEARHTCFEALNITRFLDYGD RQPRAELWLP+NVDV+ K A +Q E+ARG+QA CPTGFYMDD A TSGGG PIKYRYCGL + SKDDAIRDYILSFRPDVVLANW M+HKLW H +G EI FFENLGRTLDKMTENGEFRPRFLFW+SSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIE VNWTTLTKKWA+DIQDGMHH KHATRMLAHLLVHR+CQD EDP P
Sbjct: 194 SGGKVDGYQQAITGGYVWKPYDCRYSLLNVEARHTCFEALNITRFLDYGD------RQPRAELWLPRNVDVNAKRAVNQKERARGQQADCPTGFYMDD----ANTSGGGLPIKYRYCGLPALYDSKDDAIRDYILSFRPDVVLANWAMMHKLWRHGYGSEITPFFENLGRTLDKMTENGEFRPRFLFWMSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEASARLRVQWMNYDSCFFTFEVNWTTLTKKWAVDIQDGMHHLKHATRMLAHLLVHRMCQDREDPGP 473
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Match: A0A6H5KGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ9_9PHAE) HSP 1 Score: 459 bits (1181), Expect = 4.600e-148 Identity = 220/255 (86.27%), Postives = 229/255 (89.80%), Query Frame = 1
Query: 4 SGGKVDGYQQAITGGFVWKPYGCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPKNVDVHGKAGSQDEQARGKQAGCPTGFYMDDGDDDAETSGGGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHH-GKHATRMLAH 765
SGGKVDGY+QAITGG+VWKPY CRY LNVEARHTCF+ALNITRFLDYGDSMIQTSRQPR ELWLPKNVDVHGKAGSQD QARGKQAGCPTGFYMDDGD+DAETSGGGSPIKYRYCGLSGFHYSKD AIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGR LDKMT+NGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLR+VLEPRGWIE + LD + G H G+HA R H
Sbjct: 407 SGGKVDGYRQAITGGYVWKPYDCRYSLLNVEARHTCFDALNITRFLDYGDSMIQTSRQPRVELWLPKNVDVHGKAGSQDAQARGKQAGCPTGFYMDDGDNDAETSGGGSPIKYRYCGLSGFHYSKDYAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRALDKMTDNGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRSVLEPRGWIEASELD-----DLDQEVGSRHPGRHAPREARH 656
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Match: A0A6H5KRQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRQ7_9PHAE) HSP 1 Score: 266 bits (679), Expect = 8.780e-77 Identity = 128/263 (48.67%), Postives = 167/263 (63.50%), Query Frame = 1
Query: 13 KVDGYQQAITGGFVWKPYGCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPK-NVDVHGKAGSQDEQARG-KQAGC---PTGFYMDDGDDDAETSGGGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRTLDKMTENGEFRPRFLFWLSSPFLVSEREPHCVLERAVQFNDGLRAVLEPRGWIEVNWTTLTKKWALDIQDGMHHGKHATRMLAHLLVHRIC 786
K G + GG+ W+PY CRY ++ + R +CF NITRFLD+GDS+I T R R LWLP + V G + + G K++GC P +Y + D G + RYCG+ + K +R+ F+PDVVLANW ++H+LWHH E F + LGR LD MTE RPR+ FWLS+PFLVSEREPHCVLER +QF LR +LEPRGWIE+NW ++T+KW +DI DGMHHG+ ATRMLA+LL+H +C
Sbjct: 212 KPTGELKHAQGGYTWQPYDCRYDLMDTDTRLSCFREKNITRFLDFGDSLISTGRMARTALWLPTADSSVWSTGGGEKKIGEGAKESGCVGGPIQYYGEARHQDDRDGSGSTATTNRYCGVESYWQVKPGQVRNL---FKPDVVLANWALVHRLWHHTLD-EFQTFLKQLGRQLDGMTEQDGHRPRYTFWLSAPFLVSEREPHCVLERGLQFTKALRGLLEPRGWIEINWVSMTRKWGVDILDGMHHGEPATRMLAYLLMHHVC 470
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Match: D7FTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ1_ECTSI) HSP 1 Score: 147 bits (371), Expect = 3.350e-33 Identity = 73/174 (41.95%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 43 GGFVWKPYGCRYPPLNVEARHTCFEALNITRFLDYGDSMIQTSRQPRAELWLPK-NVDVHGKAGSQDEQARG-KQAGC---PTGFYMDDGDDDAETSGGGSPIKYRYCGLSGFHYSKDDAIRDYILSFRPDVVLANWGMIHKLWHHDFGGEIAHFFENLGRTLDKMTENGEFRP 549
GG+ W+PY CRY ++ + R +CF NITRFLD+GDS+I TSR R LWLP + V G +++ G K++GC P +Y + D G + RYCG+ + K +R+ + SF+PDVVLANW ++H+LWHH E F + LGR LD MTE RP
Sbjct: 486 GGYTWQPYDCRYDLMDTDTRLSCFREKNITRFLDFGDSLISTSRMARTALWLPTADSSVWSTGGGENKIGEGAKESGCVGGPIQYYGEARHQDEHDGSGSTATTNRYCGVESYWQVKPGQVRNLVTSFKPDVVLANWALVHRLWHHTLD-EFQTFLKQLGRQLDGMTEQDGHRP 658 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8015.19333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8015.19333.1 >prot_Ecto-sp13_S_contig8015.19333.1 ID=prot_Ecto-sp13_S_contig8015.19333.1|Name=mRNA_Ecto-sp13_S_contig8015.19333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp MIQTSRQPRAELWLPKNVDVHGKAGSQDEQARGKQAGCPTGFYMDDGDDDback to top mRNA from alignment at Ecto-sp13_S_contig8015:2..5690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8015.19333.1 ID=mRNA_Ecto-sp13_S_contig8015.19333.1|Name=mRNA_Ecto-sp13_S_contig8015.19333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8015:2..5690+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8015:2..5690+ >mRNA_Ecto-sp13_S_contig8015.19333.1 ID=mRNA_Ecto-sp13_S_contig8015.19333.1|Name=mRNA_Ecto-sp13_S_contig8015.19333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8015:2..5690+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |