mRNA_Ecto-sp13_S_contig8010.19331.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8010.19331.1
Unique NamemRNA_Ecto-sp13_S_contig8010.19331.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: D7FZ85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ85_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 7.180e-44
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            DRQDEMFVPLTS SDPNYEHRRTY+EEMVKDGVAEEDVKKIA+LMHTGAPQDELERAVVNGVNRRFFG+DIPA+IVE
Sbjct:   75 DRQDEMFVPLTSTSDPNYEHRRTYVEEMVKDGVAEEDVKKIAYLMHTGAPQDELERAVVNGVNRRFFGQDIPADIVE 151          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A355DRG2_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA11162 TaxID=2055781 RepID=A0A355DRG2_9CYAN)

HSP 1 Score: 76.6 bits (187), Expect = 6.220e-15
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D +D  F PL SAS+P Y  RR Y+EE V +  ++EDVK+IA L+ T A  + L   +V  VNRRFFG++IP  I +
Sbjct:   67 DERDLWFCPLESASNPTYRPRRAYLEEKVAESYSQEDVKRIAELLKTNASDEVLTHEMVQVVNRRFFGKEIPLSITK 143          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: UPI0016862D4D (hypothetical protein n=1 Tax=Calothrix membranacea TaxID=212352 RepID=UPI0016862D4D)

HSP 1 Score: 75.1 bits (183), Expect = 2.300e-14
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 RQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEI 225
            ++D  F P  S+++P Y  RR Y+EE V     +EDVKKIA L+ T A  + L  A+V  VNRRFFG+DIPAEI
Sbjct:   66 QRDLWFCPFESSTNPTYHPRRAYLEEKVAISYQQEDVKKIADLLRTDASDEVLADAMVQIVNRRFFGQDIPAEI 139          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A1D2P8J3_9CYAN (Uncharacterized protein n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2P8J3_9CYAN)

HSP 1 Score: 75.1 bits (183), Expect = 2.370e-14
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D +D  F P  S S PNYE RR Y+EE V  G   +DVK+IA L+ T A  + L  A+V  VNRRFFG +IP  I +
Sbjct:   67 DERDLWFFPFESTSCPNYESRRAYLEEKVAIGYNRDDVKRIAELLKTNASDEVLAHAMVQVVNRRFFGEEIPLPITQ 143          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: UPI00139143D8 (hypothetical protein n=1 Tax=Nostoc sp. B(2019) TaxID=2690446 RepID=UPI00139143D8)

HSP 1 Score: 73.9 bits (180), Expect = 6.400e-14
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D +D  F P  S++DP Y  R+TY+EE V     +EDVKKIA L+   A  + L   +V  VNRRFFG D+P EI +
Sbjct:   66 DERDLWFCPFESSADPTYYPRKTYLEEKVAISYTQEDVKKIAELLRINASDEVLAYEMVQVVNRRFFGEDVPTEITD 142          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: UPI001CFDFF82 (hypothetical protein n=1 Tax=Microseira wollei TaxID=467598 RepID=UPI001CFDFF82)

HSP 1 Score: 70.9 bits (172), Expect = 2.850e-13
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D++D  F P  S ++P Y+ RR Y+EE V    ++EDVK IA L+   A  + L  A+V  VNRRFFG +IP  I +
Sbjct:   67 DKRDLWFCPFESTANPTYQPRRAYLEEKVATSYSQEDVKTIAELLKNNAADEVLAHAMVQVVNRRFFGEEIPLHITK 143          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A0P4UME5_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. NIES-2104 TaxID=1552121 RepID=A0A0P4UME5_9CYAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.650e-12
Identity = 32/75 (42.67%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    7 QDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            +D  F P  S S+P Y  RR Y+E    +G ++ED+++IA L+ T A  D L  A+V  VNRRFFG ++P  I +
Sbjct:   68 RDLWFCPFESTSNPTYSPRRAYLEAKSAEGYSQEDIQQIAELLRTNADDDTLAHAMVQVVNRRFFGEEVPNSITQ 142          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A8J6XL69_9CYAN (Uncharacterized protein n=1 Tax=Iningainema tapete BLCC-T55 TaxID=2748662 RepID=A0A8J6XL69_9CYAN)

HSP 1 Score: 69.3 bits (168), Expect = 5.200e-12
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D +D  F P    S+P+Y+ RR Y+EE V  G  +EDV+ IA L+ T A  + L   +V  VN RFFG++IP  I +
Sbjct:  711 DERDLWFCPFEPTSNPSYQPRRAYLEEKVATGYTQEDVQSIAELLRTNASDEVLAHEMVQVVNHRFFGKEIPLAITK 787          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A351L9G3_9CYAN (Uncharacterized protein n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A351L9G3_9CYAN)

HSP 1 Score: 68.6 bits (166), Expect = 6.190e-12
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            D++D  F P  S ++P Y+ RR Y+EE V    ++EDVK IA L+   A  + L  A+V  VN+RFFG +IP  I +
Sbjct:   67 DKRDLWFCPFESTANPTYQPRRAYLEEKVATSYSQEDVKTIAELLINNASDEVLAHAMVQVVNQRFFGEEIPLHITK 143          
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Match: A0A537J0T1_9BACT (Uncharacterized protein n=1 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537J0T1_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.080e-11
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 DRQDEMFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELERAVVNGVNRRFFGRDIPAEIVE 231
            + +D  F+P  SA+DP+Y+ R  Y+ + V  G  + DV+++A L+   A +D L   +V  VNRRFFG +IP  I +
Sbjct:   49 EERDLWFLPFESAADPSYKPRLAYLHQKVSTGYTQADVQRVALLLQANADEDVLAYEMVQVVNRRFFGEEIPRSITD 125          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8010.19331.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FZ85_ECTSI7.180e-4493.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A355DRG2_9CYAN6.220e-1548.05Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
UPI0016862D4D2.300e-1451.35hypothetical protein n=1 Tax=Calothrix membranacea... [more]
A0A1D2P8J3_9CYAN2.370e-1449.35Uncharacterized protein n=1 Tax=Scytonema millei V... [more]
UPI00139143D86.400e-1446.75hypothetical protein n=1 Tax=Nostoc sp. B(2019) Ta... [more]
UPI001CFDFF822.850e-1344.16hypothetical protein n=1 Tax=Microseira wollei Tax... [more]
A0A0P4UME5_9CYAN1.650e-1242.67Uncharacterized protein n=1 Tax=Leptolyngbya sp. N... [more]
A0A8J6XL69_9CYAN5.200e-1242.86Uncharacterized protein n=1 Tax=Iningainema tapete... [more]
A0A351L9G3_9CYAN6.190e-1242.86Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
A0A537J0T1_9BACT1.080e-1138.96Uncharacterized protein n=1 Tax=Terrabacteria grou... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8010contigEcto-sp13_S_contig8010:1615..2869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size231
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_002700.1
Cds size216
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.0720997-CDS-Ecto-sp13_S_contig8010:1614..17371681464074.0720997-CDS-Ecto-sp13_S_contig8010:1614..1737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8010 1615..1737 -
1681464074.085601-CDS-Ecto-sp13_S_contig8010:2761..28541681464074.085601-CDS-Ecto-sp13_S_contig8010:2761..2854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8010 2762..2854 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464074.0987837-UTR-Ecto-sp13_S_contig8010:2854..28691681464074.0987837-UTR-Ecto-sp13_S_contig8010:2854..2869Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8010 2855..2869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8010.19331.1prot_Ecto-sp13_S_contig8010.19331.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8010 1615..2854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8010.19331.1

>prot_Ecto-sp13_S_contig8010.19331.1 ID=prot_Ecto-sp13_S_contig8010.19331.1|Name=mRNA_Ecto-sp13_S_contig8010.19331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MFVPLTSASDPNYEHRRTYIEEMVKDGVAEEDVKKIAFLMHTGAPQDELE
RAVVNGVNRRFFGRDIPAEIVE
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mRNA from alignment at Ecto-sp13_S_contig8010:1615..2869-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8010.19331.1 ID=mRNA_Ecto-sp13_S_contig8010.19331.1|Name=mRNA_Ecto-sp13_S_contig8010.19331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8010:1615..2869- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGGCAGGACGAAATGTTCGTTCCCCTTACCTCGGCCTCCGACCCCAA CTACGAGCACCGCCGAACCTACATCGAAGAGATGGTCAAGGACGGCGTCG CCGAAGAGGTACGTACGTACGTACGTTTGTATGCATACGCTCTTGTATTC GTTGTGTTGTTTTGTCTTTCGCTTTCGAACACCGTCGCACCTACATCCAA GAGATGGTCAAGGACGGCGTCGCCGAAGAGGTACGTACGCACGTACGTTT GTATGCTTACGTACTTGTCTTCGTTGTGCTTTTTTTTTTTCGTTTACGAA CACCGCCGCGCCGCGCCTACATCGACGAGACGGCCAAGAACCGTGTCGTC TGCTGTTGTTTCGCTTGGTTTATGTGTGCCTGTTTTTTATTTTTTTATTT ACACAACGAATCCATCTCCATCTACAGAAAAGAGTCTATAGGTAGACTAG CAATGGCTTCAGTGAGTCAACGGAAGGCTTACCAATACTTCTACGATATC CCAACCAGCATTCAACGATGGCTTCCCCTGTGGGCAACAGACTCAACGAG GAAGTTTGGTGGCGATCAGGTGCATCTCTCTTTGTTCCTGCTACAGGTCG ACGACGAGTGTCGTATATTATACGTACGTACGTCTCTTGGTTGTTCTTGT TTTGTTCGGTGTCGTGCTCGCGTGCGTGTGTTTCGTGCATCGCGTGTCCC TTTCTGTAGGCGAGGAGGTAAACGTTCGTCCGTCGCCTGTGGGTGTTGTT TTGTTTCTTGTGGTGCGTGCGTGCGTGCGTGCGTCGTGTGTCTCTCCGTG TGCTTCCTTTGTCCTGCCGCCGCCGCCGTCGCTGCCGCCGCCGTGATTAT CGTCGGGGAGAGAAGATAGCGAATGACTCCTCCTCCTCGTTGCGGGATCA ACTATGCAAAACAATACCTATCGCTCTTCCGCCCTCCTCTCTTCCCCGCC CCCTCCCTTCGCGGACTTTTCTTCCCCCCCATAACCTTGGCCCCCCACCG TCCCCGGCATCTGTAGGAGTGCGAGGGCCATGGTCTAGCGACTGCAACGG CATGCGTTTACATGGGTACCCCCCCCCCCCACCGACAAGCGCCTAAAACA CCGCTTTTTTGGAACTCCTCCGCCCCCGGCAGGACGTGAAGAAGATCGCG TTCCTGATGCACACGGGGGCCCCGCAGGACGAGCTGGAGAGGGCCGTGGT GAACGGAGTCAACCGTCGCTTCTTCGGCCGGGATATTCCCGCCGAGATCG TCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8010:1615..2869-

>mRNA_Ecto-sp13_S_contig8010.19331.1 ID=mRNA_Ecto-sp13_S_contig8010.19331.1|Name=mRNA_Ecto-sp13_S_contig8010.19331.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8010:1615..2869- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTTCCCCTTACCTCGGCCTCCGACCCCAACTACGAGCACCGCCG
AACCTACATCGAAGAGATGGTCAAGGACGGCGTCGCCGAAGAGGACGTGA
AGAAGATCGCGTTCCTGATGCACACGGGGGCCCCGCAGGACGAGCTGGAG
AGGGCCGTGGTGAACGGAGTCAACCGTCGCTTCTTCGGCCGGGATATTCC
CGCCGAGATCGTCGAG
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