mRNA_Ecto-sp13_S_contig801.19328.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig801.19328.1
Unique NamemRNA_Ecto-sp13_S_contig801.19328.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: D7FVS8_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVS8_ECTSI)

HSP 1 Score: 1339 bits (3466), Expect = 0.000e+0
Identity = 745/818 (91.08%), Postives = 774/818 (94.62%), Query Frame = 1 
Query: 1273 MRKRGGAEAFLLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEVGRYFRAPTLKSRSGRHEHEIRDSRCGGARVRRDSATDSTLVEVSYVPLMDIVFGRKDVKESRGKGSNQDDKGTDDPFNDWDDARGHEPRKENEALCLPEAYSSEDDGDNDSYEYCFVDIDRIRAARIAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAACACAVDGTGLTTHSVAPSLLMRRVLTAEARKSLCQTLSKRTEDRSLAGCIPDMTSDRNEERELLRERLDHGSELKEASERESLPRDDNRRMEMWISTLAEDELAQTRASKARVDLKTSLHLAATAGLPDSVKDLLGRGMGESGKETVGAAQGCATWDTSSKPSEDIIGRAQLSTGHCAYDHHNISRGMPDAATLATDANGWSALHACCAEDSTQHYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRHFALLALLTAGADPWSVTSRRWNALHYSAASGSLWCTRVLAYWDSDSGVLARQENSAGTTAMDLGRTDDIRGAMSTIWEAAALGESERVSRSYQEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMAGLAAVTRGEDVSLPCIPPQPLYKGDKVAQRPSLYTRLARRCGKPARRHRGGLASTRERNDSGTTELRGKPPGVFDRRDYIGVCRALLSAAADVHALDNRCRTPLALASASGNVEIVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVAGLRAGLAIEENSLSGEESS 3726
            MRKRGGAEAFLLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEVGRYFRA TLKSRSGRH+HEIRDS+ G  RVRRDS+TDSTLVEVSYVPLMDIVFGRK+VKESR  GSNQDDKGTDDP NDW+D RG+EPR+E++ALCLPE YSSEDDGD+ S E+CFVDIDRIRAARIAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAA ACAVDGTGLT HSV+PSLLMRRVL AEARKSLCQTLSKRTEDRSL GCIPDMTSDR EERELLRERLDHGSELKE+SE ESL RDDNRRM MWISTLAEDELAQTRAS+ARVDLKTSLHLAATAGLPDSV DLLGRG+GESGKETVGA QGCA WDTSSKPSEDIIGRA+LSTGHCAYDHHNISRGMP+AATLATDANGWSALHACC EDSTQHYSCALALLGS DDPNART  GKTPLHIAA+A+G AKSDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRH ALLALLTAGA+PWSVTSRRWNALHYSAASGSLWCTR+L YWDSDSGVLARQENSAGTTAMDLGRTDDIR AMS+IWEAAALGE+ERVSRS QEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMAGLAAVTRG+DVSLPC PP+ L+K DKVAQRPSLYT LARRC KPARRHRG +ASTRERNDSGT ELRGKPPG FDRRDY G CRALLSAAADVHALDNRCRTPLALA+ASGNVEIVEI XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DVAGLRAGLA+EENSLSGEE S
Sbjct:    1 MRKRGGAEAFLLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEVGRYFRARTLKSRSGRHQHEIRDSQRGDVRVRRDSSTDSTLVEVSYVPLMDIVFGRKEVKESRRMGSNQDDKGTDDPSNDWEDERGYEPRRESKALCLPEEYSSEDDGDSGSCEHCFVDIDRIRAARIAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAASACAVDGTGLTPHSVSPSLLMRRVLAAEARKSLCQTLSKRTEDRSLGGCIPDMTSDRKEERELLRERLDHGSELKESSECESLQRDDNRRMAMWISTLAEDELAQTRASEARVDLKTSLHLAATAGLPDSVTDLLGRGIGESGKETVGATQGCAKWDTSSKPSEDIIGRARLSTGHCAYDHHNISRGMPNAATLATDANGWSALHACCTEDSTQHYSCALALLGSHDDPNARTNTGKTPLHIAASASGPAKSDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRHIALLALLTAGANPWSVTSRRWNALHYSAASGSLWCTRLLVYWDSDSGVLARQENSAGTTAMDLGRTDDIRLAMSSIWEAAALGETERVSRSCQEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMAGLAAVTRGDDVSLPCAPPRLLHKSDKVAQRPSLYTHLARRCCKPARRHRGRVASTRERNDSGTPELRGKPPGAFDRRDYAGACRALLSAAADVHALDNRCRTPLALAAASGNVEIVEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDVAGLRAGLAMEENSLSGEEPS 818
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: D7FVS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS9_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.350e-60
Identity = 101/119 (84.87%), Postives = 113/119 (94.96%), Query Frame = 1 
Query:  493 MAVGTKNVRMVQALMQYWRRDLNQRLQDELDFLDHRRDMFIRGVDVPQTTDGGRPAGEVTIDDVDRFERWMFEERRRLVRVTELRCEECWRKSVTARDDRGRTPLHWAASARGADHSLV 849
            MAVGTKNVRMV+ LMQYWRRDLNQRL+DELDFLDHRRDMFI+GVDVPQTT GGRPAG++TIDDVDRFERW+F+ERRRLVRVTELRCEECWRKSVT+RDDRGRTPLHWAAS   ++ +L+
Sbjct:    1 MAVGTKNVRMVKTLMQYWRRDLNQRLEDELDFLDHRRDMFIQGVDVPQTTGGGRPAGKITIDDVDRFERWLFDERRRLVRVTELRCEECWRKSVTSRDDRGRTPLHWAASGTSSEAALL 119
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: A0A8J2SL70_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SL70_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-8
Identity = 116/424 (27.36%), Postives = 174/424 (41.04%), Query Frame = 1 
Query:  307 RLVRSVLCTRILIPDADKASNRVIRAVLSGDRGALDETAKRKRLK---GVSVALAADDRQRTALHMAVGTKNVRMVQALMQYWRRDLNQRLQDELDFLDHRRDMFIRGVDVPQTTDGGRPAGEVTIDDVDRFERWMFEERRRLVRVTELRCEECWRKSVTARDDRGRTPLHWAASARGADHS-LVHTLITTGRADLS------ARDASVGRDTAMFAELKAKLRGETLDGRSIPSKRCRGSHG------------------NAPANGNTDMNPAIFPRGGEFHRRTGKLRRL----RSKKEEYRPEGKR-DTTNG------RDVQPARGADARQGPDGLTACTAKVQWFCGALAKTAKKLSMR--------KRGGAEAF-----LLSVFEDFDRNGDGTLSMRQFRECLFDVNVRVSEQTLLEV 1422
            R+ R  L    + P +  A   V+ A   GD  AL + AK+       G+  AL AD + RTA H A       ++Q+  + WR   +    +E D    R+   +RG  V  + D  R   E  +     F      E  R +R  ELRCE  WR   TARDD GRTPLH+A +   A H+ L    + TG ADL+       ++ S+G    + A + ++L  +    + I  K  + + G                  +A  +   +++ A   R     RRT    R+    RS+     P   R D   G      R   P   A A + PD +    A + W   AL + A++ + R        K G  +       LL  FE  D   DG +++ QF  CL  ++VR++  TL E+
Sbjct:  257 RISRRDLTDEDIAPPSQDA-RAVLEACFDGDLPALKKAAKKCGFSEGLGLRCALVADQKGRTACHYAALQGRHDVLQSFGEAWRAQAS----EEYD----RKVSDLRGRLVEASRDCRRRNVEHELRGAYEF---AAREADRELRQRELRCEAAWRTCCTARDDLGRTPLHYAVACVDAAHTALTVKALMTGSADLALPSNALVKNGSLGEPPLLRA-VASELFADDFAAQRIADKLFKNNGGGDRPPKRGWRYVGDTCRKHAKRDNKENLDAASKARAA---RRTPVFLRVQEAGRSRAAYLFPRHARIDVGTGALCGAPRKAMPLIQASAPKEPDDVLRREALLLWLWRALRQGARRAARRYAEVGKIHKDGPGKTRTNAGELLRAFERADPRADGCITLDQFDSCLRALDVRLAYGTLEEL 664
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: A0A4Z1JJ00_9HELO (NACHT domain-containing protein n=2 Tax=Botrytis TaxID=33196 RepID=A0A4Z1JJ00_9HELO)

HSP 1 Score: 67.0 bits (162), Expect = 2.870e-7
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 1 
Query: 2458 ISRGMPDAATLATDANGWSALHACCAEDSTQHYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSH----GTSLE--AQDADGLRPIHFAARKGRHFALLALLTAGADPWSVTSR 2820
            + R  P     A D +G++ LH  CA   T  YS   AL+ +  D N ++ N +TPLH AA   GR +  V+ ML++H    G++++  AQD+DG+ P+HFA   GR  ++  L++AGAD    TSR
Sbjct: 1141 VRRLCPKFDVNAKDIDGYTPLHYACA---TSEYS-VFALITAGADLNFQSFNRRTPLHCAAR--GR-QCGVLSMLLNHAQRTGSTIDINAQDSDGMTPLHFACISGRPESVSILISAGADIEKKTSR 1260
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: UPI001901E4A5 (uncharacterized protein n=2 Tax=Botrytis TaxID=33196 RepID=UPI001901E4A5)

HSP 1 Score: 64.3 bits (155), Expect = 1.900e-6
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 1 
Query: 2458 ISRGMPDAATLATDANGWSALHACCAEDSTQHYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSH----GTSLE--AQDADGLRPIHFAARKGRHFALLALLTAGADPWSVTSR 2820
            + R  P       D +G++ LH  CA   T  YS   AL+ +  + NA++ N +TPLH AA   GR +  V+ ML++H    G++++  AQD+DG+ P+HFA   GR  ++  L++AGA+    TSR
Sbjct: 1131 VRRLCPKFDVNTKDIDGYTPLHYACA---TSEYS-VFALIMAGAEMNAQSFNRRTPLHCAAR--GR-QCGVLSMLLNHAQRTGSTIDINAQDSDGMTPLHFACISGRPESVSILISAGANIEKKTSR 1250
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: A0A4Z1F0K1_9HELO (Uncharacterized protein n=1 Tax=Botrytis tulipae TaxID=87230 RepID=A0A4Z1F0K1_9HELO)

HSP 1 Score: 63.9 bits (154), Expect = 2.320e-6
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 1 
Query: 2458 ISRGMPDAATLATDANGWSALHACCAEDSTQHYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSH----GTSLE--AQDADGLRPIHFAARKGRHFALLALLTAGAD 2799
            I R  P     A D +G++ LH  CA   T  YS  + ++   +  NA++ N +TPLH AA   GR +  V+ ML++H    G++++  AQD+DG+ P+HFA   GR  ++  L++AGAD
Sbjct: 1120 IRRLCPKFDVNAKDIDGYTPLHYACA---TPEYSVFVLIMAGAE-LNAQSFNTRTPLHCAAR--GR-QCGVLSMLLNHAQRTGSTIDINAQDSDGMTPLHFACISGRPESVSILISAGAD 1232
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: A0A7S1JI64_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JI64_9EUGL)

HSP 1 Score: 62.0 bits (149), Expect = 3.370e-6
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 1 
Query: 2476 DAATLATDANGWSALHACCAEDSTQHYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSHGTSLEAQDADGLRPIHFAARKGRHFALLALLTAGADPWSVTSRRWNALHYSAASGSLWCTRVLAYWD 2892
            D AT   D  G +ALH  C   +   +   L   G  D  N + I+  T LH A+T +     +V+ +L+ H   + AQ+ DGL P+HFA R     ++  LL  GADP S+      A  Y+A+  +  C   LA  D
Sbjct:  190 DVATTLQD--GTTALHVLCCRCNNPDFVRILLEAGPPDFVNYKDIDNMTALHFASTYSA---DEVLQILIDHKADVNAQNEDGLTPLHFACRNHDRMSISRLLYNGADP-SI-----KASSYAASGMANMCALDLANSD 317
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BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Match: A0A423XBR5_9PEZI (Uncharacterized protein n=1 Tax=Cytospora leucostoma TaxID=1230097 RepID=A0A423XBR5_9PEZI)

HSP 1 Score: 58.9 bits (141), Expect = 5.890e-5
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 1 
Query: 2572 LLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSHGTS---------LEAQDADGLRPIHFAARKGRHFALLALLTAGADP 2802
            LL +  DP+A T+ G TPLH+AA A    + ++I +L+S   S         LEA+D  G  P+H A R GRH ++  LL AGADP
Sbjct:  114 LLRARADPSAATLEGLTPLHLAARAR---QPNIIGILLSELCSRYDDHVTHDLEAKDELGRTPLHHACRSGRHESVSLLLAAGADP 196
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig801.19328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVS8_ECTSI0.000e+091.08EF-hand domain-containing protein n=2 Tax=Ectocarp... [more]
D7FVS9_ECTSI1.350e-6084.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2SL70_9STRA1.400e-827.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4Z1JJ00_9HELO2.870e-738.58NACHT domain-containing protein n=2 Tax=Botrytis T... [more]
UPI001901E4A51.900e-637.01uncharacterized protein n=2 Tax=Botrytis TaxID=331... [more]
A0A4Z1F0K1_9HELO2.320e-637.50Uncharacterized protein n=1 Tax=Botrytis tulipae T... [more]
A0A7S1JI64_9EUGL3.370e-633.09Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A423XBR5_9PEZI5.890e-543.02Uncharacterized protein n=1 Tax=Cytospora leucosto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig801contigEcto-sp13_S_contig801:580..5973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score1349.3
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FVS8
Model size3730
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_002000.1
Cds size3729
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig801.19328.1prot_Ecto-sp13_S_contig801.19328.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig801 580..5973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.639612-CDS-Ecto-sp13_S_contig801:579..13511681464073.639612-CDS-Ecto-sp13_S_contig801:579..1351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 580..1351 -
1681464073.6556516-CDS-Ecto-sp13_S_contig801:1537..18331681464073.6556516-CDS-Ecto-sp13_S_contig801:1537..1833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 1538..1833 -
1681464073.6688116-CDS-Ecto-sp13_S_contig801:2083..34131681464073.6688116-CDS-Ecto-sp13_S_contig801:2083..3413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 2084..3413 -
1681464073.6855776-CDS-Ecto-sp13_S_contig801:3567..40751681464073.6855776-CDS-Ecto-sp13_S_contig801:3567..4075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 3568..4075 -
1681464073.6974351-CDS-Ecto-sp13_S_contig801:4411..47611681464073.6974351-CDS-Ecto-sp13_S_contig801:4411..4761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 4412..4761 -
1681464073.7090027-CDS-Ecto-sp13_S_contig801:4948..51151681464073.7090027-CDS-Ecto-sp13_S_contig801:4948..5115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 4949..5115 -
1681464073.7220693-CDS-Ecto-sp13_S_contig801:5337..55601681464073.7220693-CDS-Ecto-sp13_S_contig801:5337..5560Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 5338..5560 -
1681464073.7354372-CDS-Ecto-sp13_S_contig801:5890..59731681464073.7354372-CDS-Ecto-sp13_S_contig801:5890..5973Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig801 5891..5973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig801.19328.1

>prot_Ecto-sp13_S_contig801.19328.1 ID=prot_Ecto-sp13_S_contig801.19328.1|Name=mRNA_Ecto-sp13_S_contig801.19328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1243bp
PGAQCSCSRPHTRTLGMMVSPSPSPAVRFEGAPDDPLLRGGVTKGEEAPA
ASAKTTEEAGAPVEGAVEKDHGECARTTPETNETTRPKKEEVESLEKTLT
NQRLVRSVLCTRILIPDADKASNRVIRAVLSGDRGALDETAKRKRLKGVS
VALAADDRQRTALHMAVGTKNVRMVQALMQYWRRDLNQRLQDELDFLDHR
RDMFIRGVDVPQTTDGGRPAGEVTIDDVDRFERWMFEERRRLVRVTELRC
EECWRKSVTARDDRGRTPLHWAASARGADHSLVHTLITTGRADLSARDAS
VGRDTAMFAELKAKLRGETLDGRSIPSKRCRGSHGNAPANGNTDMNPAIF
PRGGEFHRRTGKLRRLRSKKEEYRPEGKRDTTNGRDVQPARGADARQGPD
GLTACTAKVQWFCGALAKTAKKLSMRKRGGAEAFLLSVFEDFDRNGDGTL
SMRQFRECLFDVNVRVSEQTLLEVGRYFRAPTLKSRSGRHEHEIRDSRCG
GARVRRDSATDSTLVEVSYVPLMDIVFGRKDVKESRGKGSNQDDKGTDDP
FNDWDDARGHEPRKENEALCLPEAYSSEDDGDNDSYEYCFVDIDRIRAAR
IAVLETTDALSRPPLFLAAAAGNVPAAKTLIRHGAACACAVDGTGLTTHS
VAPSLLMRRVLTAEARKSLCQTLSKRTEDRSLAGCIPDMTSDRNEERELL
RERLDHGSELKEASERESLPRDDNRRMEMWISTLAEDELAQTRASKARVD
LKTSLHLAATAGLPDSVKDLLGRGMGESGKETVGAAQGCATWDTSSKPSE
DIIGRAQLSTGHCAYDHHNISRGMPDAATLATDANGWSALHACCAEDSTQ
HYSCALALLGSLDDPNARTINGKTPLHIAATAAGRAKSDVIPMLVSHGTS
LEAQDADGLRPIHFAARKGRHFALLALLTAGADPWSVTSRRWNALHYSAA
SGSLWCTRVLAYWDSDSGVLARQENSAGTTAMDLGRTDDIRGAMSTIWEA
AALGESERVSRSYQEGSRSPKDAIGKPWTCPGVNSKTPGLGFTPLHACMA
GLAAVTRGEDVSLPCIPPQPLYKGDKVAQRPSLYTRLARRCGKPARRHRG
GLASTRERNDSGTTELRGKPPGVFDRRDYIGVCRALLSAAADVHALDNRC
RTPLALASASGNVEIVEILLRAGADPRARDADGNTPLHFAFSYANVAVAA
ALSKEGGDQDACNRDGKTPQDVAGLRAGLAIEENSLSGEESS*
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mRNA from alignment at Ecto-sp13_S_contig801:580..5973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig801.19328.1 ID=mRNA_Ecto-sp13_S_contig801.19328.1|Name=mRNA_Ecto-sp13_S_contig801.19328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig801:580..5973- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGGGCACAGTGCTCCTGCTCGCGACCCCATACACGCACATTGGGTAT
GATGGTATCACCAAGCCCCTCCCCTGCTGTGAGGTACAGAGAGATAGCGC
CAATCATGCTGTGCTCGGGAAATGCGCTGGTGCAGTACGGCTGAAAATAG
ATGAAGCGTCATGTCATCGGCCTGGTGTGTATGCACAAAATACGTGTGGG
CATCGGATACAGGCTATATTGCTGAAGGATGAGCATTGTCCTCTCATATC
AATTATGTCACAAAGTCGTCGCCAACTATAGTATGTTTTGTTCGACGATG
CAAACATGTAAACCAACAGTGTGCAGCCGTGTACGGCACAGAGGCCTTTA
TACAGTATACACGACGTTTTACGGATCGGAACACGGTTCTCCTGGCATGT
TCATCGTGGTCAGGTTTGAGGGGGCTCCCGATGACCCTCTGCTCCGTGGT
GGCGTCACGAAGGGGGAAGAAGCGCCAGCAGCATCTGCGAAAACAACAGA
AGAAGCTGGTGCACCGGTTGAAGGTGCAGTAGAGAAGGACCATGGCGAAT
GCGCGAGAACGACGCCTGAGACTAACGAGACAACCAGACCCAAGAAGGAA
GAGGTGGAGAGCCTTGAAAAGACTCTGACAAATCAGGTGCATTAACAAAA
CTGCCGGTGTGTTCACCCCGGCGAAAGCTCTGGCGGTGTATCTCTTAGAA
TGATGGAAGCACACATCTTGCGAAAGAGCAGCAAACTTGCTTTCCCTCCG
TCAACTGGGTTAAGCATCGACCGTGAAACATTACCTCTCGCACTTGTTCC
GAATCACCAGAGCCTCTGATCAAACTGCTACGCCCTGCCCAATAACTATG
TTCTCCAGCGCCTTGTGCGCTCAGTGTTGTGCACGCGCATACTTATTCCA
GATGCGGACAAGGCGTCCAATCGAGTCATCCGAGCGGTGCTGTCTGGGGA
CAGGGGAGCACTTGACGAGACAGCCAAACGCAAGCGTCTGAAAGGAGTGT
CGGTAGCACTGGCAGCGGATGATAGGTACTGAAACTGAATATACACCGCA
CACGGTTAAACCATGCGTTCTCCTTCGTACACTTTCGTGAGAAGATCAAC
AGTGAAAGCTGCTGTAGTCATGCTTTTGCCGTAGGGATAAGAGAAGCGCG
CTGATGACACCTCGATACTGTAGATAGTCATCAATCGCTCCATGCACACC
CGCCTTGGTCAGACAACGGACGGCGCTCCACATGGCAGTTGGCACTAAGA
ACGTCCGGATGGTGCAGGCTCTGATGCAATATTGGCGACGTGACCTCAAC
CAACGTCTCCAAGACGAGCTGGATTTCCTGGACCATCGTCGAGACATGTT
CATTCGAGGAGTGGACGTTCCTCAGACTACCGACGGTGGCCGACCAGCCG
GGGAGGTCACTATCGACGACGTCGATCGTTTCGAGAGGTGGATGTTTGAG
GAGAGGCGACGACTTGTGAGAGTAACAGAGCTCCGATGCGAGGAGTGCTG
GAGAAAGTCAGTGACCGCCAGAGACGATAGGGGACGCACCCCTCTGCACT
GGGCTGCTTCAGGTACCGGCAGCAAGGCAGCTTTATTTCGTCCTGCCCGT
GTCACTACTCACCACAACTCTGTTTCGTACACATGCTGTTTCGATAAACT
CCACGACCATGTGCCCTGTTCCTGTACATTTCAAAGAACAAGAGAATAAC
ACGGTGCAGGTTTTCGTCCGAAGGGAGGCTTCTCCACTGCAGTCTACAAC
AGATCTGCCCACTTGTTAGATTATTCAGCAACCCATTATCCACACGCTTG
TTTTCTGGCCAACCAGCCGTGTTTTGTCATCAACTAGATCGTTTTTTCCC
CCGTTTTGCTCGTGTCCCGTGCAATCCACTATCATCGCCCTTTTACAGCG
CGGGGAGCGGATCACTCCCTCGTCCACACCCTCATCACCACCGGCAGGGC
GGACCTATCCGCAAGAGACGCAAGTGTTGGCCGCGATACAGCCATGTTTG
CAGAGCTCAAAGCCAAGCTCCGTGGTGAAACACTCGACGGAAGAAGTATT
CCATCGAAAAGATGTCGAGGTTCCCACGGCAACGCACCCGCCAATGGTAA
CACCGATATGAACCCAGCCATTTTCCCCCGTGGCGGAGAATTCCATCGGC
GAACCGGAAAGCTCAGACGTCTGCGGAGCAAAAAGGAAGAGTATAGACCC
GAGGGAAAACGAGATACGACGAACGGCCGAGATGTGCAGCCCGCGCGAGG
TGCAGACGCACGCCAGGGCCCTGACGGGTTGACCGCTTGCACCGCGAAGG
TCCAGTGGTTCTGCGGGGCGTTGGCGAAAACGGCGAAGAAGCTGTCGATG
CGCAAGAGGGGCGGGGCAGAGGCATTCTTGCTGAGCGTATTCGAGGACTT
TGACCGGTGGGTAGTACTGGATGACACGAGACAACTGAGCCTACGGTTTT
ACTACTATATAGTGTCGGAGAAATTCCTATACGAGGGAGTATATTTTTAC
TGTCTCGCGCCCCCGACTCTTGCTCTCCTTACGTTCGTTCGTACCGGTCA
CGTTATGCAGGAATGGAGACGGAACCCTTTCCATGCGACAATTTCGCGAA
TGTCTTTTCGATGTCAACGTGAGAGTCTCGGAACAGACCCTGCTCGAGGT
CGGACGTTACTTCCGAGCACCTACCCTAAAATCTCGCAGCGGTCGCCACG
AACACGAAATCCGCGATTCCCGGTGCGGAGGTGCACGAGTCAGGAGGGAC
AGCGCCACCGACTCCACGCTCGTCGAAGTTTCGTATGTGCCTCTGATGGA
TATTGTGTTCGGAAGAAAGGACGTCAAAGAATCAAGAGGAAAAGGTTCTA
ACCAAGATGATAAGGGGACAGATGACCCATTCAATGACTGGGATGATGCA
CGAGGACATGAGCCACGCAAGGAGAACGAAGCGCTATGTCTACCAGAGGC
ATACTCCAGCGAAGACGACGGTGATAACGACAGCTACGAGTACTGCTTTG
TTGATATTGATCGAATTCGTGCAGCGAGGATTGCCGTTCTCGAGACCACA
GATGCACTTAGCCGACCACCGCTCTTTCTCGCTGCCGCTGCTGGTAACGT
TCCGGCCGCAAAGACTCTCATTCGCCATGGGGCAGCCTGCGCTTGTGCAG
TAGATGGGACTGGCTTGACCACACATTCTGTTGCACCGAGTTTGCTCATG
AGGAGGGTCCTGACTGCAGAAGCCAGGAAATCGCTATGCCAAACTTTGTC
GAAACGGACCGAAGACCGCTCCCTTGCTGGGTGCATCCCTGACATGACCA
GTGATCGAAATGAGGAACGAGAACTTCTGCGCGAGAGGCTTGATCACGGG
AGTGAACTGAAGGAAGCAAGCGAAAGGGAGTCGTTACCGAGGGACGATAA
TCGTCGGATGGAAATGTGGATCTCGACCTTGGCAGAGGATGAGCTAGCAC
AGACTCGCGCAAGCAAAGCTCGAGTCGATCTAAAGACGAGTCTCCACCTG
GCTGCAACTGCTGGGTTACCTGATTCTGTTAAAGACCTTCTCGGCCGAGG
GATGGGAGAGTCAGGGAAAGAGACAGTCGGGGCGGCTCAAGGGTGTGCGA
CGTGGGACACATCATCGAAACCGTCCGAAGACATCATTGGGCGAGCTCAA
CTCAGTACAGGGCACTGTGCATACGACCACCACAACATCTCCCGGGGTAT
GCCTGACGCGGCGACACTGGCGACTGATGCGAACGGATGGTCGGCGTTAC
ATGCATGTTGCGCAGAGGATTCAACTCAGCACTACTCCTGTGCGCTCGCA
TTGCTGGGATCACTTGATGATCCGAACGCTCGGACTATCAACGGGAAGAC
GCCTCTGCACATAGCCGCAACTGCTGCCGGACGGGCAAAGGTTCGCATTT
CTACTACATGTAAATGGGTAGAAAGACCTTCGTTGCGGCACGCTCACATT
ATTAGATGCACCCTACGAAGTTGACAACTTTGTTGAAACTACACACTGAT
GTTTTTTCATCTTACAACGAGTCGGCGCGGTCGATCTTGTCTGGGGAACC
CCTATTTCGACAAAGGAAAGCATCGCTTGAATTTCTCGGCGTCGCCACAT
AACCCCATTCCTCCTCGTGCGGCCTTGTTCGTACCACAAGAGTGATGTAA
TTCCGATGCTCGTGAGCCACGGGACAAGTCTTGAAGCCCAAGACGCTGAC
GGGCTCCGACCTATCCATTTTGCCGCGAGGAAGGGCCGGCACTTCGCTCT
CCTTGCTCTTCTTACTGCGGGAGCAGACCCTTGGTCCGTCACGTCAAGGA
GGTGGAATGCCCTGCACTACTCAGCGGCCAGCGGGTCATTGTGGTGTACC
CGAGTGCTGGCATATTGGGATTCCGATTCTGGCGTTCTCGCCAGACAAGA
GAACAGCGCTGGCACGACGGCCATGGACTTGGGCAGGTGCGTAAACGCCA
AGGGACTTCTGTCAGGGGCAGACGCCGTTCTTTCGTTCTATCGCTGGTCT
TGAATGCTTAAACCATCATATCAAGTTCCTGGAACCAACCGTCATGGTCG
TAGAATTATGAGTGGGTGTAAGTCAGTTGAGTCTGCTGCATTCTCGAATC
ATTTTCTTGCTTGACATGACAGGACGGACGACATTCGCGGGGCCATGTCG
ACCATCTGGGAAGCCGCAGCGCTAGGAGAGAGCGAACGGGTGTCCCGCTC
ATACCAAGAGGGCTCGCGCTCTCCGAAAGACGCGATCGGCAAGCCTTGGA
CGTGCCCAGGGGTCAACAGCAAGACCCCGGGGCTTGGGTTTACACCTCTC
CACGCTTGCATGGCAGGACTGGCGGCAGTGACGAGGGGTGAGGACGTGAG
TCTCCCGTGCATCCCTCCTCAGCCGCTTTACAAGGGTGATAAAGTAGCTC
AACGGCCTTCCTTGTACACACGCCTTGCGCGTCGATGCGGCAAACCAGCA
CGCCGCCACCGAGGCGGGCTTGCAAGCACGCGCGAGAGAAACGATTCGGG
AACCACCGAGTTGAGAGGAAAACCTCCGGGCGTTTTCGATCGACGTGACT
ACATCGGGGTGTGCCGAGCCCTCCTGTCTGCAGCGGCAGACGTCCACGCT
CTCGACAACCGATGTCGAACACCTTTGGCTCTAGCTTCCGCGAGCGGAAA
CGTGGAGATCGTGGAAATACTACTGCGAGCAGGAGCGGACCCGCGGGCGC
GCGACGCGGACGGGAACACTCCGTTGCACTTTGCGTTTTCGTATGCAAAC
GTAGCGGTCGCGGCCGCACTTTCAAAGGAAGGGGGAGACCAAGACGCCTG
CAACCGAGACGGCAAGACCCCTCAAGACGTTGCCGGTCTTCGTGCGGGTC
TTGCGATAGAAGAAAACAGCCTCTCGGGCGAAGAGTCGAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig801:580..5973-

>mRNA_Ecto-sp13_S_contig801.19328.1 ID=mRNA_Ecto-sp13_S_contig801.19328.1|Name=mRNA_Ecto-sp13_S_contig801.19328.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig801:580..5973- (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGGGGCACAGTGCTCCTGCTCGCGACCCCATACACGCACATTGGGTAT
GATGGTATCACCAAGCCCCTCCCCTGCTGTGAGGTTTGAGGGGGCTCCCG
ATGACCCTCTGCTCCGTGGTGGCGTCACGAAGGGGGAAGAAGCGCCAGCA
GCATCTGCGAAAACAACAGAAGAAGCTGGTGCACCGGTTGAAGGTGCAGT
AGAGAAGGACCATGGCGAATGCGCGAGAACGACGCCTGAGACTAACGAGA
CAACCAGACCCAAGAAGGAAGAGGTGGAGAGCCTTGAAAAGACTCTGACA
AATCAGCGCCTTGTGCGCTCAGTGTTGTGCACGCGCATACTTATTCCAGA
TGCGGACAAGGCGTCCAATCGAGTCATCCGAGCGGTGCTGTCTGGGGACA
GGGGAGCACTTGACGAGACAGCCAAACGCAAGCGTCTGAAAGGAGTGTCG
GTAGCACTGGCAGCGGATGATAGACAACGGACGGCGCTCCACATGGCAGT
TGGCACTAAGAACGTCCGGATGGTGCAGGCTCTGATGCAATATTGGCGAC
GTGACCTCAACCAACGTCTCCAAGACGAGCTGGATTTCCTGGACCATCGT
CGAGACATGTTCATTCGAGGAGTGGACGTTCCTCAGACTACCGACGGTGG
CCGACCAGCCGGGGAGGTCACTATCGACGACGTCGATCGTTTCGAGAGGT
GGATGTTTGAGGAGAGGCGACGACTTGTGAGAGTAACAGAGCTCCGATGC
GAGGAGTGCTGGAGAAAGTCAGTGACCGCCAGAGACGATAGGGGACGCAC
CCCTCTGCACTGGGCTGCTTCAGCGCGGGGAGCGGATCACTCCCTCGTCC
ACACCCTCATCACCACCGGCAGGGCGGACCTATCCGCAAGAGACGCAAGT
GTTGGCCGCGATACAGCCATGTTTGCAGAGCTCAAAGCCAAGCTCCGTGG
TGAAACACTCGACGGAAGAAGTATTCCATCGAAAAGATGTCGAGGTTCCC
ACGGCAACGCACCCGCCAATGGTAACACCGATATGAACCCAGCCATTTTC
CCCCGTGGCGGAGAATTCCATCGGCGAACCGGAAAGCTCAGACGTCTGCG
GAGCAAAAAGGAAGAGTATAGACCCGAGGGAAAACGAGATACGACGAACG
GCCGAGATGTGCAGCCCGCGCGAGGTGCAGACGCACGCCAGGGCCCTGAC
GGGTTGACCGCTTGCACCGCGAAGGTCCAGTGGTTCTGCGGGGCGTTGGC
GAAAACGGCGAAGAAGCTGTCGATGCGCAAGAGGGGCGGGGCAGAGGCAT
TCTTGCTGAGCGTATTCGAGGACTTTGACCGGAATGGAGACGGAACCCTT
TCCATGCGACAATTTCGCGAATGTCTTTTCGATGTCAACGTGAGAGTCTC
GGAACAGACCCTGCTCGAGGTCGGACGTTACTTCCGAGCACCTACCCTAA
AATCTCGCAGCGGTCGCCACGAACACGAAATCCGCGATTCCCGGTGCGGA
GGTGCACGAGTCAGGAGGGACAGCGCCACCGACTCCACGCTCGTCGAAGT
TTCGTATGTGCCTCTGATGGATATTGTGTTCGGAAGAAAGGACGTCAAAG
AATCAAGAGGAAAAGGTTCTAACCAAGATGATAAGGGGACAGATGACCCA
TTCAATGACTGGGATGATGCACGAGGACATGAGCCACGCAAGGAGAACGA
AGCGCTATGTCTACCAGAGGCATACTCCAGCGAAGACGACGGTGATAACG
ACAGCTACGAGTACTGCTTTGTTGATATTGATCGAATTCGTGCAGCGAGG
ATTGCCGTTCTCGAGACCACAGATGCACTTAGCCGACCACCGCTCTTTCT
CGCTGCCGCTGCTGGTAACGTTCCGGCCGCAAAGACTCTCATTCGCCATG
GGGCAGCCTGCGCTTGTGCAGTAGATGGGACTGGCTTGACCACACATTCT
GTTGCACCGAGTTTGCTCATGAGGAGGGTCCTGACTGCAGAAGCCAGGAA
ATCGCTATGCCAAACTTTGTCGAAACGGACCGAAGACCGCTCCCTTGCTG
GGTGCATCCCTGACATGACCAGTGATCGAAATGAGGAACGAGAACTTCTG
CGCGAGAGGCTTGATCACGGGAGTGAACTGAAGGAAGCAAGCGAAAGGGA
GTCGTTACCGAGGGACGATAATCGTCGGATGGAAATGTGGATCTCGACCT
TGGCAGAGGATGAGCTAGCACAGACTCGCGCAAGCAAAGCTCGAGTCGAT
CTAAAGACGAGTCTCCACCTGGCTGCAACTGCTGGGTTACCTGATTCTGT
TAAAGACCTTCTCGGCCGAGGGATGGGAGAGTCAGGGAAAGAGACAGTCG
GGGCGGCTCAAGGGTGTGCGACGTGGGACACATCATCGAAACCGTCCGAA
GACATCATTGGGCGAGCTCAACTCAGTACAGGGCACTGTGCATACGACCA
CCACAACATCTCCCGGGGTATGCCTGACGCGGCGACACTGGCGACTGATG
CGAACGGATGGTCGGCGTTACATGCATGTTGCGCAGAGGATTCAACTCAG
CACTACTCCTGTGCGCTCGCATTGCTGGGATCACTTGATGATCCGAACGC
TCGGACTATCAACGGGAAGACGCCTCTGCACATAGCCGCAACTGCTGCCG
GACGGGCAAAGAGTGATGTAATTCCGATGCTCGTGAGCCACGGGACAAGT
CTTGAAGCCCAAGACGCTGACGGGCTCCGACCTATCCATTTTGCCGCGAG
GAAGGGCCGGCACTTCGCTCTCCTTGCTCTTCTTACTGCGGGAGCAGACC
CTTGGTCCGTCACGTCAAGGAGGTGGAATGCCCTGCACTACTCAGCGGCC
AGCGGGTCATTGTGGTGTACCCGAGTGCTGGCATATTGGGATTCCGATTC
TGGCGTTCTCGCCAGACAAGAGAACAGCGCTGGCACGACGGCCATGGACT
TGGGCAGGACGGACGACATTCGCGGGGCCATGTCGACCATCTGGGAAGCC
GCAGCGCTAGGAGAGAGCGAACGGGTGTCCCGCTCATACCAAGAGGGCTC
GCGCTCTCCGAAAGACGCGATCGGCAAGCCTTGGACGTGCCCAGGGGTCA
ACAGCAAGACCCCGGGGCTTGGGTTTACACCTCTCCACGCTTGCATGGCA
GGACTGGCGGCAGTGACGAGGGGTGAGGACGTGAGTCTCCCGTGCATCCC
TCCTCAGCCGCTTTACAAGGGTGATAAAGTAGCTCAACGGCCTTCCTTGT
ACACACGCCTTGCGCGTCGATGCGGCAAACCAGCACGCCGCCACCGAGGC
GGGCTTGCAAGCACGCGCGAGAGAAACGATTCGGGAACCACCGAGTTGAG
AGGAAAACCTCCGGGCGTTTTCGATCGACGTGACTACATCGGGGTGTGCC
GAGCCCTCCTGTCTGCAGCGGCAGACGTCCACGCTCTCGACAACCGATGT
CGAACACCTTTGGCTCTAGCTTCCGCGAGCGGAAACGTGGAGATCGTGGA
AATACTACTGCGAGCAGGAGCGGACCCGCGGGCGCGCGACGCGGACGGGA
ACACTCCGTTGCACTTTGCGTTTTCGTATGCAAACGTAGCGGTCGCGGCC
GCACTTTCAAAGGAAGGGGGAGACCAAGACGCCTGCAACCGAGACGGCAA
GACCCCTCAAGACGTTGCCGGTCTTCGTGCGGGTCTTGCGATAGAAGAAA
ACAGCCTCTCGGGCGAAGAGTCGAGTTAG
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