mRNA_Ecto-sp13_S_contig8005.19325.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8005.19325.1
Unique NamemRNA_Ecto-sp13_S_contig8005.19325.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI)

HSP 1 Score: 447 bits (1151), Expect = 7.830e-142
Identity = 219/230 (95.22%), Postives = 223/230 (96.96%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEMLE 690
            F IRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAG+FSRDHYEVVTVGGNKV +GIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVT TRVINLYNESSTPCRYCFVIQG SSIFHFSHTRGIIPSAGSEH GEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNR ENVG+G FSPEALDEML+
Sbjct:  319 FSIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGSFSRDHYEVVTVGGNKVAVGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTTTRVINLYNESSTPCRYCFVIQGHSSIFHFSHTRGIIPSAGSEHPGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNR-ENVGLGNFSPEALDEMLK 547          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A6H5L764_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L764_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 1.290e-76
Identity = 117/122 (95.90%), Postives = 119/122 (97.54%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQ 366
            F IRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKV +GIQGRA+GCSVRLEKKEDPFARGCGVPDSVNFREVKVGVT TRVINLYNESSTPCRYCFVIQ
Sbjct:  276 FSIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVAVGIQGRAIGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTTTRVINLYNESSTPCRYCFVIQ 397          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A836C8F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F2_9STRA)

HSP 1 Score: 212 bits (540), Expect = 8.200e-60
Identity = 115/243 (47.33%), Postives = 150/243 (61.73%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCG------------VPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVI-QGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEMLE 690
            F++ RLE D   VF + P  G I PEDEV V   ++P+SAGT++ DHY ++TVGGN + + + G A G  V + K  DP A                VPDSVNFR+V+VG  +TRV+ L N ++ PCR+   +   +SS+F                  +AQ+TL F+P  P NYYRR F LLE Q PLVLD MGT Y+ A+GE++EQRPAPLRHAHVQAFRNR E  G+G+ SPE LD M++
Sbjct:  273 FKLTRLETDCAPVFDLSPSAGTILPEDEVTVAVRFTPLSAGTYTADHYRLITVGGNTLTLTVTGWACGPHVWITKAIDPAAXXXXXXXXXXXXXAQTVPDSVNFRDVEVGGASTRVVTLSNAAAAPCRFSVAVPHRNSSVF------------------KAQLTLCFSPPSPSNYYRRFFILLEGQLPLVLDCMGTGYIPARGEIREQRPAPLRHAHVQAFRNRAE-AGLGRLSPEELDAMVD 496          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA)

HSP 1 Score: 202 bits (515), Expect = 3.250e-56
Identity = 104/227 (45.81%), Postives = 147/227 (64.76%), Query Frame = 1
Query:    4 QIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEM 684
            ++ R+E DRE VF+VHP   ++PP+ E+ V   +   SAGT++ +H E VT GGN+  + + G +V   V++ K+EDPFA+G GV  SVNF  +KVG    R + L N S     + F I  +   F  S  RGIIP+       E  V  TF+P +PINYY+R+F ++E++ PL +D +GTAY+ A GEV+EQRPAPLRHAHVQA RNR +  G+G+ SP+ L++M
Sbjct:  290 EVIRVERDREPVFAVHPTSLIVPPQSELPVMIQFHSRSAGTYTAEHLEFVTPGGNRPRLLLTGSSVAPVVKIYKQEDPFAKGFGVSTSVNFGSIKVGARCDRAVFLQNNSDADLHFQF-ISDEGGCFKLSKYRGIIPA-----QLEVSVKFTFSPDRPINYYKRLFVIVEHRLPLFVDLLGTAYISAAGEVKEQRPAPLRHAHVQAARNR-QAAGLGRASPDELEKM 509          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A7S1U5R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5R9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.360e-54
Identity = 104/233 (44.64%), Postives = 140/233 (60.09%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARG---CGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEMLE 690
            F I R+EGDRE VF+V P  GV+PP   + +   +     G  + + Y + T GG+  E+ ++G +      + KK DP   G     +PDS+NFREV+VG TA RV+ L N+S  P ++CF ++ D  +F+ S  RG+IPS G E      V   FTPT P  YYRRVFCL+E   P +LD MGTA++ AKG V+EQRP P+R AHVQA RNR    G+G   P+ L +M E
Sbjct:  288 FDIIRVEGDREPVFAVEPSTGVVPPGGSIDLQLFFRADVPGVMTTERYHIKTPGGHLTEVQLRGYSAAPPTAIYKKMDPMLSGTAAAALPDSINFREVEVGQTANRVLFLRNDSRRPIKFCFDMEPDG-VFNVSRVRGVIPSGGIE----THVLFNFTPTNPHQYYRRVFCLIEGNAPKLLDLMGTAFIRAKGVVKEQRPLPIRQAHVQAQRNRIA-AGLGGMGPDDLSQMFE 514          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A482UMM2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UMM2_9ARCH)

HSP 1 Score: 164 bits (414), Expect = 9.570e-46
Identity = 94/248 (37.90%), Postives = 135/248 (54.44%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDP-----------------FARGCGVP-DSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEMLE 690
            F++ R + DR+ VF++ P  G+IPP+ EV +T +Y P+  GT+++D Y   T       + ++G A+   V L K   P                 F    G P  S+NFR++ +G   TR++ L N+S     YC V+  +  +F  +   GIIP    +      V + F P KPINYYRR F L+ +  PL  D +GT Y+VA+GEV+EQRPAPLRHAH+QA+RNR  +   G  SP+ LD   E
Sbjct:   23 FELVRFDADRDEVFTLSPTQGIIPPKSEVSITISYMPLGMGTYTKDRYAFRTPSQCYTILTLKGLAMPPKVCLFKDTPPGQLSSSPQRLLESAGSVFMEEEGSPLFSLNFRDILIGKAETRILYLSNDSEREVAYC-VMGDEQGVFQMTPKHGIIPPLVKQFP----VKVVFRPIKPINYYRRFFVLVGDALPLFYDCIGTGYIVARGEVKEQRPAPLRHAHIQAYRNRVVH-NFGSLSPDELDTFYE 264          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A2D4C9N8_PYTIN (ASH domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9N8_PYTIN)

HSP 1 Score: 155 bits (392), Expect = 9.290e-40
Identity = 94/228 (41.23%), Postives = 129/228 (56.58%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPD-SVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRG-IIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALD 678
            FQI R+E D + VF   P  GV+PPE  + +   Y+P+SAGTF+ DH++VVT GGN+  I  +GRA+G +V L +K     R   VP  +++F +V +G + TRV+ + NES     Y    Q    +F F    G I PSA      E  V LTF PT+  N+YRRVF LL+NQ PL +D + T Y        + RP+P + AHV A+R R    GI   SP+ L+
Sbjct:  306 FQICRVESDCDPVFFFSPMHGVVPPESTLTIRVRYTPLSAGTFTCDHFDVVTPGGNRERITCKGRAIGPTVSLWRKNLDANRL--VPTRAISFGDVALGQSTTRVLTMRNESPIEVNYHVDCQARGGVFEFDKVNGRIAPSA------EVNVILTFAPTRVGNFYRRVFVLLQNQSPLAVDLLATGYD------DKTRPSPFQLAHVDAYRLR-ARAGIALLSPDQLE 518          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A1W0A0N0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0N0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.520e-39
Identity = 88/228 (38.60%), Postives = 131/228 (57.46%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEM 684
            FQI  +E D E +F   P  G IPPE E+ +   Y+P+S GTF+ D++++VT GG+ V++  +G+A+G  V L KK        G   S+NFR+V VG +A RV+ L NES    R+  ++   + IF  +   G+IP        E  + LTF P+ P NYYRR+FCL++NQ  + +D +GT Y          RP+P + AHV A+R R E+  +G  SP+ L+ +
Sbjct:  277 FQIVPMETDHEPLFFFTPLKGTIPPESELPIRVKYTPISPGTFTCDNFKIVTPGGHAVQVQCRGKAIGPVVTLWKKNRASNMVTG--HSINFRDVCVGESAARVLYLKNESPLAVRFN-IMSAANGIFTIAKIAGVIPPLL-----ECSILLTFAPSAPGNYYRRLFCLIQNQSTVYVDVLGTGYDA------NIRPSPFQQAHVDAYRLRCEH-NLGHLSPDGLEAL 489          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: K3WH51_GLOUD (ASH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH51_GLOUD)

HSP 1 Score: 151 bits (382), Expect = 2.200e-38
Identity = 90/228 (39.47%), Postives = 128/228 (56.14%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKK--EDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALD 678
            F+I  +E D + VF   P  GV+ PE  + +   Y+P+SAGTF+ DH++V+T GGN V+I  +G+A G  V + KK  E  F        SVNF++V+VG T +RVI L NES     + F  Q    +FHF +  G IP        +  VT+TFTPT+  N+YRR F L+ NQ    +D +GT Y        + RP+P + AHV A+  R  + G+G  SP+ L+
Sbjct:  284 FRIVNVESDHDPVFFFSPLQGVVDPESSLSIKVRYTPLSAGTFTCDHFDVLTPGGNTVQITCKGKADGTVVSIWKKNLESNFV----TTKSVNFQDVQVGKTVSRVITLRNESPMDVHFHFSCQRHG-VFHFDNVNGKIPPYL-----DVNVTITFTPTQAGNFYRRFFLLIHNQSTQFVDVLGTGYD------DKTRPSPFQQAHVDAYHLRV-SAGLGLLSPDQLE 494          
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Match: A0A067CZB2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZB2_SAPPC)

HSP 1 Score: 151 bits (381), Expect = 2.960e-38
Identity = 90/228 (39.47%), Postives = 129/228 (56.58%), Query Frame = 1
Query:    1 FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEVVTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVTATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQVTLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPLRHAHVQAFRNRWENVGIGKFSPEALDEM 684
            F I  +E D E  F   P  G IPPE  + +   ++P+S GTF+ D++++VT GG+ V+I  +G+A+G          P      V  S+NFR+V+VG +ATRV+ L NE++ P R+  ++   + IF  S   G IP        EA V LTF P  P NYYRR+FCLLENQ  + +D +GT Y        E RP+P + AHV A+R R E+  +G  SP+ L+ +
Sbjct:  277 FHIFPIETDHEPTFFFSPLKGTIPPESALPIRVKFTPLSPGTFTCDNFKIVTPGGHAVQIVCKGKAIG----------PV-----VGHSINFRDVRVGESATRVLYLKNEAAIPVRF-HLVSAANGIFGVSKVAGEIPPLL-----EASVLLTFAPLTPGNYYRRLFCLLENQATMFVDVLGTGYDA------EIRPSPFQQAHVDAYRLRCEH-NLGHLSPDGLEAL 476          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8005.19325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIG0_ECTSI7.830e-14295.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L764_9PHAE1.290e-7695.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8F2_9STRA8.200e-6047.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2S9Y5_9STRA3.250e-5645.81Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U5R9_9STRA2.360e-5444.64Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482UMM2_9ARCH9.570e-4637.90Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A2D4C9N8_PYTIN9.290e-4041.23ASH domain-containing protein (Fragment) n=1 Tax=P... [more]
A0A1W0A0N0_9STRA2.520e-3938.60Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
K3WH51_GLOUD2.200e-3839.47ASH domain-containing protein n=1 Tax=Globisporang... [more]
A0A067CZB2_SAPPC2.960e-3839.47Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8005contigEcto-sp13_S_contig8005:4978..7120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score451.4
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D7FIG0
Preferred nameCCDC108
Model size690
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CMXN@1,2QSJW@2759
Cds size690
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.3525462-CDS-Ecto-sp13_S_contig8005:4977..50321681464073.3525462-CDS-Ecto-sp13_S_contig8005:4977..5032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 4978..5032 -
1681464073.3679311-CDS-Ecto-sp13_S_contig8005:5400..55441681464073.3679311-CDS-Ecto-sp13_S_contig8005:5400..5544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 5401..5544 -
1681464073.3784413-CDS-Ecto-sp13_S_contig8005:5892..60171681464073.3784413-CDS-Ecto-sp13_S_contig8005:5892..6017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 5893..6017 -
1681464073.3916476-CDS-Ecto-sp13_S_contig8005:6438..66331681464073.3916476-CDS-Ecto-sp13_S_contig8005:6438..6633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 6439..6633 -
1681464073.402239-CDS-Ecto-sp13_S_contig8005:6949..71201681464073.402239-CDS-Ecto-sp13_S_contig8005:6949..7120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 6950..7120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8005.19325.1prot_Ecto-sp13_S_contig8005.19325.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8005 4978..7120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8005.19325.1

>prot_Ecto-sp13_S_contig8005.19325.1 ID=prot_Ecto-sp13_S_contig8005.19325.1|Name=mRNA_Ecto-sp13_S_contig8005.19325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=230bp
FQIRRLEGDREAVFSVHPCDGVIPPEDEVVVTATYSPVSAGTFSRDHYEV
VTVGGNKVEIGIQGRAVGCSVRLEKKEDPFARGCGVPDSVNFREVKVGVT
ATRVINLYNESSTPCRYCFVIQGDSSIFHFSHTRGIIPSAGSEHSGEAQV
TLTFTPTKPINYYRRVFCLLENQQPLVLDAMGTAYVVAKGEVQEQRPAPL
RHAHVQAFRNRWENVGIGKFSPEALDEMLE
back to top

mRNA from alignment at Ecto-sp13_S_contig8005:4978..7120-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8005.19325.1 ID=mRNA_Ecto-sp13_S_contig8005.19325.1|Name=mRNA_Ecto-sp13_S_contig8005.19325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8005:4978..7120- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGATCCGTCGGCTGGAGGGAGATCGCGAGGCCGTGTTTTCGGTGCA CCCTTGCGACGGAGTAATACCGCCGGAGGATGAAGTAGTAGTGACGGCAA CATACTCGCCCGTCTCAGCGGGCACCTTTTCTAGGGACCACTACGAGGTT GTCACCGTCGGGGGCAACAAGGTGTGAGAAGAAGGGGATATGGTTGCCCA TCGTTTATCCTTGTCTCCCATAGCCGTGGTTGACGTTTTCGTCCTTTGTG TAGAAGACGTTCTACCGAAGAGGGTCCTGCCTCGGACTTAACGTGGTGAT TCCGTTGAGACCCGGATGGCCTAGCCACCATTTCGAGCAGTTACCATGAT GCTAGTCAGACGGCACAAGGCGGGATGGCCCTCAACTTTACTTGCAGCAA ACAGGACACACCTACACGTACGAACTTCCTCCTGTTATTATCAAATGAGT GAGGGTGTATCACGTGGCGGTATCCTTTCTCGCTCAGGTTGAGATTGGGA TCCAAGGCCGGGCAGTCGGGTGTTCTGTTCGGTTGGAGAAGAAGGAAGAC CCCTTCGCCAGGGGGTGCGGTGTTCCGGACTCGGTGAACTTCCGCGAAGT GAAAGTCGGTGTGACGGCGACACGAGTGATCAACCTTTACAACGAATCTT CCACGCCATGCCGCTACTGTTTCGTCATTCAGGTGCCGCGACGATTTTTA CGAAAATGTTGCGAGTATGAGTGCTCTTCCGATGGACACGTTCAAACGGC AACGAAGGGAATACCTCAGTAAGACGAGATTTCCTCAATAAGTGAGAAGC GATATGACAATTTCGGCATCAAGCCTAGTTGCAGTTACTAAAATACATGA TAATATTATCCCTCGGTGACTTTCCTCAAGCCACACTCTCTCGACAACCC CTATATCCTAGTACGCGGACAGAGGTCTACCATCCGGATAGCGTGAAAGG GGTATGGGTGACCAGGTTGCTAATGCGACCGTTCGGCCACATATGGGAAG CGCGCCATAGACTACTTACCAGTGGTAGGGAATCAGGTGACACTTACTAC CTAAGTTACCCCAGCCGGTATTACAAACACGTTTTTCGTACGTTCTTCAG CAGGGAGACAGCTCAATCTTCCACTTCAGCCACACGCGGGGAATCATACC GTCTGCCGGATCCGAGCACTCCGGAGAGGCCCAAGTGACCCTCACGTTTA CACCCACCAAGCCAATAAACTACTACAGGTAGGTGTGCTTCAACACTTTT AGACAGAAAGGAGACTCCAAACGGCACACACTCACCACGGTCCATCCATC ACCAAACCGTGTGCTAAACGAATACTCGCCGTCTCGAAATATCACCTGTT TACATGGTTCTCCGCCGTGCGGCTTCCTTCCTACGAGCATGCACAAAAGT CTGTGAAACAGTTACTCTTCAAACCGTCTGTACTGTTTGTGGGTGGTTGT TCGACGTCACCACAGTGCCCGACATGCAAACAGTAGATTTTTCAGGCAAC CAATTTTTTTTAACACTATTTTCTCGTTTTGATGCCTCCAGTGGTGCTGA TTTGCCGCTCGCTGTTGATACGTCAGGCGCGTGTTCTGTCTGCTGGAGAA TCAACAACCTTTGGTGCTCGACGCTATGGGCACCGCGTACGTCGTGGCCA AGGGGGAGGTACAGGAGCAGCGTCCGGCCCCTCTGAGACATGCTCATGTC CAAGCCTTTCGAAACAGGTGGTTCACCAAATCCGCAAGCGTGCTGGGCTT TCGTTTGCTGGTGTGGTCTCGAACAAACAGGAGCTTCTCCTGAGCACGAA AAGTCCAGCGCGCATTGCTCGAAGGAGTAGAATGTTTTACCCTGTTTTGT CGTTGCTGCAGTCTGTGGGCTCGGCACCTGTCTCGCCAACGTAGAGTAGA TGCGAATGTACCCCGTGTGTGCTGCAATAACTTCACATCGGGCAACAGTG AGATTCACCAACAACGCCAGTTCAGCCGTAGACGTTCCAGCAAGAAAAGC AACTCCAAGTATCAGTTGCAGTAGGATAGAGGCTAACTATGTCAGGTCCT TACACAACCTTAACAAACGTTCGCAACTTGCTGGAAAGGGAGAACGTGGG AATCGGCAAGTTTTCGCCGGAGGCCCTCGACGAAATGCTGGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8005:4978..7120-

>mRNA_Ecto-sp13_S_contig8005.19325.1 ID=mRNA_Ecto-sp13_S_contig8005.19325.1|Name=mRNA_Ecto-sp13_S_contig8005.19325.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8005:4978..7120- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCAGATCCGTCGGCTGGAGGGAGATCGCGAGGCCGTGTTTTCGGTGCA
CCCTTGCGACGGAGTAATACCGCCGGAGGATGAAGTAGTAGTGACGGCAA
CATACTCGCCCGTCTCAGCGGGCACCTTTTCTAGGGACCACTACGAGGTT
GTCACCGTCGGGGGCAACAAGGTTGAGATTGGGATCCAAGGCCGGGCAGT
CGGGTGTTCTGTTCGGTTGGAGAAGAAGGAAGACCCCTTCGCCAGGGGGT
GCGGTGTTCCGGACTCGGTGAACTTCCGCGAAGTGAAAGTCGGTGTGACG
GCGACACGAGTGATCAACCTTTACAACGAATCTTCCACGCCATGCCGCTA
CTGTTTCGTCATTCAGGGAGACAGCTCAATCTTCCACTTCAGCCACACGC
GGGGAATCATACCGTCTGCCGGATCCGAGCACTCCGGAGAGGCCCAAGTG
ACCCTCACGTTTACACCCACCAAGCCAATAAACTACTACAGGCGCGTGTT
CTGTCTGCTGGAGAATCAACAACCTTTGGTGCTCGACGCTATGGGCACCG
CGTACGTCGTGGCCAAGGGGGAGGTACAGGAGCAGCGTCCGGCCCCTCTG
AGACATGCTCATGTCCAAGCCTTTCGAAACAGGTGGGAGAACGTGGGAAT
CGGCAAGTTTTCGCCGGAGGCCCTCGACGAAATGCTGGAA
back to top