mRNA_Ecto-sp13_S_contig8005.19324.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8005.19324.1
Unique NamemRNA_Ecto-sp13_S_contig8005.19324.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8005.19324.1 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.170e-30
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 VFQVKNASRIPAIFRIDTPKGSSGVIRVSPMAGLLLGNQTKALQVVFAPRETKGYRFKLPIKV 189
            V +VKNASRIPAIFRIDTPKGSSGV+RVSPMAGLLLGNQTKALQVVFAPRETKGYRFKLPIKV
Sbjct:  901 VVKVKNASRIPAIFRIDTPKGSSGVVRVSPMAGLLLGNQTKALQVVFAPRETKGYRFKLPIKV 963
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8005.19324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG0_ECTSI2.170e-3095.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8005contigEcto-sp13_S_contig8005:154..342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score121.7
Seed ortholog evalue1.2e-25
Seed eggNOG ortholog2880.D7FIG0
Preferred nameCCDC108
Model size189
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CMXN@1,2QSJW@2759
Cds size189
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.3164554-CDS-Ecto-sp13_S_contig8005:153..3421681464073.3164554-CDS-Ecto-sp13_S_contig8005:153..342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8005 154..342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8005.19324.1prot_Ecto-sp13_S_contig8005.19324.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8005 154..342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8005.19324.1

>prot_Ecto-sp13_S_contig8005.19324.1 ID=prot_Ecto-sp13_S_contig8005.19324.1|Name=mRNA_Ecto-sp13_S_contig8005.19324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
VFQVKNASRIPAIFRIDTPKGSSGVIRVSPMAGLLLGNQTKALQVVFAPR
ETKGYRFKLPIKV
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mRNA from alignment at Ecto-sp13_S_contig8005:154..342-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8005.19324.1 ID=mRNA_Ecto-sp13_S_contig8005.19324.1|Name=mRNA_Ecto-sp13_S_contig8005.19324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8005:154..342- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTTCAGGTAAAAAACGCATCAAGAATCCCCGCGATCTTCAGGATTGA
TACCCCCAAGGGGTCCTCGGGAGTTATACGGGTATCCCCCATGGCAGGCC
TTCTTCTTGGCAACCAAACCAAGGCACTCCAGGTGGTCTTCGCTCCGAGA
GAGACCAAGGGGTACCGATTCAAGCTTCCCATAAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8005:154..342-

>mRNA_Ecto-sp13_S_contig8005.19324.1 ID=mRNA_Ecto-sp13_S_contig8005.19324.1|Name=mRNA_Ecto-sp13_S_contig8005.19324.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8005:154..342- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTTCAGGTAAAAAACGCATCAAGAATCCCCGCGATCTTCAGGATTGA
TACCCCCAAGGGGTCCTCGGGAGTTATACGGGTATCCCCCATGGCAGGCC
TTCTTCTTGGCAACCAAACCAAGGCACTCCAGGTGGTCTTCGCTCCGAGA
GAGACCAAGGGGTACCGATTCAAGCTTCCCATAAAGGTG
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