mRNA_Ecto-sp13_S_contig80007.19320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80007.19320.1
Unique NamemRNA_Ecto-sp13_S_contig80007.19320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: D8LRF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF2_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.540e-25
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:   16 SSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            S  LGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRF Q NSEV
Sbjct:  351 SPFLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFFQSNSEV 406
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 2.950e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV
Sbjct:  696 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 745
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A2G8JQ60_STIJA (Putative intraflagellar transport protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JQ60_STIJA)

HSP 1 Score: 77.8 bits (190), Expect = 2.360e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            +SL   +++  I L+ W RALELAV+HKTHVDTVLGYRQ FL S  K ET+KRFLQF   V
Sbjct:  269 ASLIFRAIMMNISLYNWDRALELAVKHKTHVDTVLGYRQKFLNSFNKVETNKRFLQFAQGV 329
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A1I7XJL4_HETBA (Uncharacterized protein n=1 Tax=Heterorhabditis bacteriophora TaxID=37862 RepID=A0A1I7XJL4_HETBA)

HSP 1 Score: 72.0 bits (175), Expect = 2.930e-15
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   40 LFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            +FRWSRALELAV+HKTH++TV+GYRQ +L   GK+ETD +FL+   EV
Sbjct:    1 MFRWSRALELAVKHKTHIETVIGYRQKYLDQIGKKETDPKFLKHMGEV 48
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A2G8L758_STIJA (Putative intraflagellar transport protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L758_STIJA)

HSP 1 Score: 77.8 bits (190), Expect = 3.430e-15
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            +SL   +++  I L+ W RALELAV+HKTHVDTVLGYRQ FL S  K ET+KRFLQF   V
Sbjct:  667 ASLIFRAIMMNISLYNWDRALELAVKHKTHVDTVLGYRQKFLNSFNKVETNKRFLQFAQGV 727
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: UPI001E1DB922 (intraflagellar transport protein 80 homolog isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB922)

HSP 1 Score: 77.8 bits (190), Expect = 3.430e-15
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            + L+  ++L  I+L+ W RALELAV+HKTHVDTVLGYRQ ++   GK+ET+KRFLQ+   +
Sbjct:  692 AGLTFRAILLNIQLYNWDRALELAVKHKTHVDTVLGYRQKYMTQYGKQETNKRFLQYKEGI 752
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A7S2CV51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV51_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.510e-15
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    7 LSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            L+  ++   IRLFRW RALELAV+ ++HVDTVLGYRQ +L   GK+ETDKRFLQ+   V
Sbjct:  191 LTYRAIKMNIRLFRWGRALELAVKSRSHVDTVLGYRQKYLDQFGKKETDKRFLQYAESV 249
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A0M3JWX0_ANISI (Intraflagellar transport protein 80 homolog (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3JWX0_ANISI)

HSP 1 Score: 77.4 bits (189), Expect = 4.680e-15
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   19 SLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            +++  I LFRW RALELAVQHK H+DTV+GYRQ +L+ +G++ETDK FLQ  +EV
Sbjct:  647 AIMFNISLFRWQRALELAVQHKMHLDTVIGYRQRYLQQTGRKETDKNFLQHLAEV 701
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: A0A8C0J507_CHEAB (Intraflagellar transport 80 n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0J507_CHEAB)

HSP 1 Score: 75.9 bits (185), Expect = 5.530e-15
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   34 IRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            I L+ W RALELAV+HKTHVDTVLGYRQ FL+  GK+ET KRFLQ+   V
Sbjct:  186 INLYNWDRALELAVKHKTHVDTVLGYRQKFLEDFGKKETSKRFLQYAEGV 235
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BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Match: UPI000359995A (intraflagellar transport protein 80 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359995A)

HSP 1 Score: 77.0 bits (188), Expect = 6.400e-15
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEETDKRFLQFNSEV 183
            ++L+  +++  ++L+ W RALELAV+HKTHVDTVLGYRQ FL    KEET+KRFLQ+   +
Sbjct:  684 ATLTFRAIMLNVQLYNWDRALELAVKHKTHVDTVLGYRQKFLARFDKEETNKRFLQYKEGI 744
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80007.19320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRF2_ECTSI1.540e-2592.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIC7_ECTSI2.950e-24100.00Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A2G8JQ60_STIJA2.360e-1562.30Putative intraflagellar transport protein n=1 Tax=... [more]
A0A1I7XJL4_HETBA2.930e-1564.58Uncharacterized protein n=1 Tax=Heterorhabditis ba... [more]
A0A2G8L758_STIJA3.430e-1562.30Putative intraflagellar transport protein n=1 Tax=... [more]
UPI001E1DB9223.430e-1555.74intraflagellar transport protein 80 homolog isofor... [more]
A0A7S2CV51_9STRA4.510e-1561.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0M3JWX0_ANISI4.680e-1561.82Intraflagellar transport protein 80 homolog (infer... [more]
A0A8C0J507_CHEAB5.530e-1570.00Intraflagellar transport 80 n=1 Tax=Chelonoidis ab... [more]
UPI000359995A6.400e-1555.74intraflagellar transport protein 80 homolog n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80007contigEcto-sp13_S_contig80007:418..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score105.5
Seed ortholog evalue9.5e-21
Seed eggNOG ortholog2880.D8LRF2
Preferred nameIFT80
Model size198
KEGG koko:K19678
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
Exons1
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
Cds size198
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.0875168-CDS-Ecto-sp13_S_contig80007:417..6151681464073.0875168-CDS-Ecto-sp13_S_contig80007:417..615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80007 418..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80007.19320.1prot_Ecto-sp13_S_contig80007.19320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80007 418..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80007.19320.1

>prot_Ecto-sp13_S_contig80007.19320.1 ID=prot_Ecto-sp13_S_contig80007.19320.1|Name=mRNA_Ecto-sp13_S_contig80007.19320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
SSLSISSLLGQIRLFRWSRALELAVQHKTHVDTVLGYRQAFLKSSGKEET
DKRFLQFNSEVGRWS*
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mRNA from alignment at Ecto-sp13_S_contig80007:418..615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80007.19320.1 ID=mRNA_Ecto-sp13_S_contig80007.19320.1|Name=mRNA_Ecto-sp13_S_contig80007.19320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80007:418..615- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTTTGTCCATCTCCTCTCTCCTTGGACAGATCCGCCTCTTCCGGTG
GTCCCGTGCGCTGGAGCTCGCCGTCCAGCACAAGACCCACGTGGATACCG
TGCTGGGGTATCGGCAGGCCTTCCTCAAGTCGTCGGGCAAGGAAGAAACC
GACAAGAGGTTCTTGCAGTTCAATTCCGAGGTGGGAAGATGGAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80007:418..615-

>mRNA_Ecto-sp13_S_contig80007.19320.1 ID=mRNA_Ecto-sp13_S_contig80007.19320.1|Name=mRNA_Ecto-sp13_S_contig80007.19320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80007:418..615- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCTCTTTGTCCATCTCCTCTCTCCTTGGACAGATCCGCCTCTTCCGGTG
GTCCCGTGCGCTGGAGCTCGCCGTCCAGCACAAGACCCACGTGGATACCG
TGCTGGGGTATCGGCAGGCCTTCCTCAAGTCGTCGGGCAAGGAAGAAACC
GACAAGAGGTTCTTGCAGTTCAATTCCGAGGTGGGAAGATGGAGCTAG
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