mRNA_Ecto-sp13_S_contig80001.19319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80001.19319.1
Unique NamemRNA_Ecto-sp13_S_contig80001.19319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: D7FMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMZ5_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 1.010e-24
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK
Sbjct:   36 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 85
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: W4GND7_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GND7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.630e-16
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            NHV++SNRSAA+LS+DNAE AL DAESCI V G W KG+ RKGAALH LK
Sbjct:   38 NHVYYSNRSAAYLSDDNAELALKDAESCIAVKGDWGKGYARKGAALHSLK 87
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A024TNC9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TNC9_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            NHV+FSNRSAA+LS+ NAE AL DAESCI V G W KG+ RKGAALH LK
Sbjct:   38 NHVYFSNRSAAYLSDGNAELALKDAESCIAVKGDWGKGYARKGAALHALK 87
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A3R7D7C2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D7C2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.260e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            NHV+FSNRSAA+LS+ NAE AL DAESCI V G W KG+ RKGAALH LK
Sbjct:   38 NHVYFSNRSAAYLSDGNAELALKDAESCIAVKGDWGKGYARKGAALHALK 87
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A7S1V0B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V0B9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.770e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            NHVF+SNRSAA+L   NAE AL DAE+C+ +NG +AKG++RKGAALH LK
Sbjct:   14 NHVFYSNRSAAYLKQGNAELALDDAEACLGLNGEFAKGYSRKGAALHSLK 63
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A2D4BTX1_PYTIN (STI1 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTX1_PYTIN)

HSP 1 Score: 76.6 bits (187), Expect = 2.240e-15
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    6 HVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            HVFFSNRSAAHLS  NA+QALADA++CI +   WAKG+ RKGAALH L+
Sbjct:   39 HVFFSNRSAAHLSLQNADQALADADACIAIKRDWAKGYARKGAALHALR 87
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A485K9J0_9STRA (Aste57867_3386 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K9J0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.160e-15
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKL 149
            NHV++SNRSAA+LS+  AE AL DAESCIKV G W KG+ RKGAALH L
Sbjct:   38 NHVYYSNRSAAYLSDGKAELALQDAESCIKVKGDWGKGYARKGAALHSL 86
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A662YB75_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YB75_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.150e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3 
Query:    6 HVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            HVF+SNRSAA+LS D+AE AL DAESCI+    WAK ++RKGAALH LK
Sbjct:   53 HVFYSNRSAAYLSLDDAEHALEDAESCIQTKPDWAKAYSRKGAALHALK 101
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A662X8A6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X8A6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.370e-14
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 3 
Query:    6 HVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKLK 152
            HVF+SNRSAA+LS D+AE AL DAESCI+    WAK ++RKGAALH LK
Sbjct:   61 HVFYSNRSAAYLSLDDAEHALEDAESCIQAKPDWAKAYSRKGAALHALK 109
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BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Match: A0A5A8E0L3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E0L3_CAFRO)

HSP 1 Score: 75.1 bits (183), Expect = 1.520e-14
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:    3 NHVFFSNRSAAHLSNDNAEQALADAESCIKVNGSWAKGFTRKGAALHKL 149
            NHV+FSNRSAA+LS  N  +AL DAE+CI  N +WAKGF+RKGAALHKL
Sbjct:   41 NHVYFSNRSAAYLSAGNGAKALEDAEACIAANPTWAKGFSRKGAALHKL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80001.19319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMZ5_ECTSI1.010e-24100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W4GND7_9STRA2.630e-1674.00Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A024TNC9_9STRA1.250e-1574.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7D7C2_9STRA1.260e-1574.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S1V0B9_9STRA1.770e-1568.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A2D4BTX1_PYTIN2.240e-1571.43STI1 domain-containing protein n=1 Tax=Pythium ins... [more]
A0A485K9J0_9STRA8.160e-1571.43Aste57867_3386 protein n=1 Tax=Aphanomyces stellat... [more]
A0A662YB75_9STRA1.150e-1469.39Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A662X8A6_9STRA1.370e-1469.39Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A5A8E0L3_CAFRO1.520e-1471.43Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80001contigEcto-sp13_S_contig80001:7..355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.0267203-CDS-Ecto-sp13_S_contig80001:6..341681464073.0267203-CDS-Ecto-sp13_S_contig80001:6..34Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80001 7..34 +
1681464073.0429358-CDS-Ecto-sp13_S_contig80001:228..3531681464073.0429358-CDS-Ecto-sp13_S_contig80001:228..353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80001 229..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80001.19319.1prot_Ecto-sp13_S_contig80001.19319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80001 7..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80001.19319.1

>prot_Ecto-sp13_S_contig80001.19319.1 ID=prot_Ecto-sp13_S_contig80001.19319.1|Name=mRNA_Ecto-sp13_S_contig80001.19319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
ATTCSSPTAVLLIFQTTTLSKRSRTPSRASRSTAPGRRVSRERGLLCTNS
S
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mRNA from alignment at Ecto-sp13_S_contig80001:7..355+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80001.19319.1 ID=mRNA_Ecto-sp13_S_contig80001.19319.1|Name=mRNA_Ecto-sp13_S_contig80001.19319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80001:7..355+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACCACGTGTTCTTCTCCAACCGCAGGTGAGGAAAATCAAGTCACAAA
AGCTAGCAGGGAGCGTCGGCCAAGGACGAATTATTTAGGTTTTCAAAGCC
AGCCGTGAGTGTGTACGGTCTGGTAAATGGCTTTAGCCAAATGTGTTCAC
CGCCTGTTTGGCCTTCGTACGCTGTTTGCAACCCCGAATGACCACGCACA
ACTGCTGTGTCTGGTACTGCAGTGCTGCTCATCTTTCAAACGACAACGCT
GAGCAAGCGCTCGCGGACGCCGAGTCGTGCATCAAGGTCAACGGCTCCTG
GGCGAAGGGTTTCACGCGAAAGGGGGCTGCTTTGCACAAACTCAAGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80001:7..355+

>mRNA_Ecto-sp13_S_contig80001.19319.1 ID=mRNA_Ecto-sp13_S_contig80001.19319.1|Name=mRNA_Ecto-sp13_S_contig80001.19319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80001:7..355+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACCACGTGTTCTTCTCCAACCGCAGTGCTGCTCATCTTTCAAACGAC
AACGCTGAGCAAGCGCTCGCGGACGCCGAGTCGTGCATCAAGGTCAACGG
CTCCTGGGCGAAGGGTTTCACGCGAAAGGGGGCTGCTTTGCACAAACTCA
AGC
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