mRNA_Ecto-sp13_S_contig8000.19318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: A0A6H5JLA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA8_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.770e-18 Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1
Query: 1099 GTVEDGWTTGDVIQGDFADSTLGDLGKIASSSNDDLIILADYRRTAGDTIDRD 1257
GT+ED W +GDVI G F DSTLGDLGKI SSSNDDLIILADYRRTAGDTIDR+
Sbjct: 23 GTIEDPWMSGDVIHGGFEDSTLGDLGKIKSSSNDDLIILADYRRTAGDTIDRE 75
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: D8LF48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF48_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 3.340e-18 Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 130 MGGASEDLSSTSAGGTGIGHRGXXXXXXXXXXXXGCDGPGVPRRRRGLSWMAQTCSTAARSFDW 321
MGGAS DL STSAGGTGIGH+GXXXXXXXXXXXX DGPGVPRRRRGLSWMAQTCSTA RSFDW
Sbjct: 1 MGGASGDLCSTSAGGTGIGHQGXXXXXXXXXXXXXXDGPGVPRRRRGLSWMAQTCSTATRSFDW 64
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 5.050e-16 Identity = 43/53 (81.13%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 2116 MLRQHYKKXXXXXXAAALPRPEYRWCYVEQVDQAAPLPDRSNGWRYRGEREGE 2274
MLRQHYKK A ALPRPEYRWCY EQVDQAAPLPDRSNGWRY G REGE
Sbjct: 1 MLRQHYKKRNYYAAATALPRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGE 53
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 5.580e-13 Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 2116 MLRQHYKKXXXXXXAAALPRPEYRWCYVEQVDQAAPLPDRSNGWRYRGEREGE 2274
MLR+H+K A RPEYRWCY EQVDQAAPLPDRSNGWRY G REG+
Sbjct: 1 MLRRHFKTTNYYAGGTAR-RPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQ 52
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: A0A6H5KUG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG2_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.210e-11 Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 2173 RPEYRWCYVEQVDQAAPLPDRSNGWRYRGEREGE 2274
RPEYRWCY EQVDQAAP+PDRSNGWRY G REGE
Sbjct: 18 RPEYRWCYAEQVDQAAPMPDRSNGWRYLGPREGE 51
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 5.350e-11 Identity = 86/210 (40.95%), Postives = 98/210 (46.67%), Query Frame = 1
Query: 34 IGTRLTFVPPSFPTLHDTSTSLRHQLHRKLGGMGG-ASEDLSSTSAGGTGI--GHRGXXXXXXXXXXXXGC--------------DGPGVPRRRRGLSWMAQTCSTAARSFDWSTLSWAGVAAXXXXXXXXXXXSGPRESAGARQPRARWRAPRHLHSRERTGPGGVPAGVRPPLQPP--SLRQGSGGGGGDVDSGMGVIGNSSGHEILT 606
IGTR+ PPS P LHD ST+ RHQLHRK GGMGG A EDLSST+AGGTG+ G +GXXXXXXXXXXXX D PG+ R +S T F SG G R + + G GG L P SL+QGSG VD GMG++GNSSG E LT
Sbjct: 22 IGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHF----------VVDGRGGGNSSSSSGATRIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXXXVDGGMGLMGNSSGDEKLT 221
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: D8LFQ4_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ4_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.740e-10 Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 2
Query: 1100 ARSKMVGRLVTSSKAISRTAPWEILAKSRRLRMMTSSSWLTTGER 1234
ARSK++GR VTSSKAISRTAPWEILA+ RRLRMMTSSSWL TGER
Sbjct: 993 ARSKILGRRVTSSKAISRTAPWEILARLRRLRMMTSSSWLITGER 1037
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 5.940e-9 Identity = 38/65 (58.46%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 4 ELERMWAFYPIGTRLTFVPPSFPTLHDTSTSLRHQLHRKLGGMGGASEDLSSTSA-GGTGIGHRG 195
ELERMWAFY LHD S SLRHQLHRKLGGMGG ED SS +A GG+G+G+ G
Sbjct: 155 ELERMWAFY--RNESDQCAAKLSALHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEG 217
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 1.280e-7 Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 2116 MLRQHYKKXXXXXXAAALPRPEYRWCYVEQVDQAAPLPDRSNGWRYRGEREGE 2274
MLR HYKK A A RPEYRWC VEQVD+A P+ RSNGWRY G REGE
Sbjct: 1 MLR-HYKKRHYYAAATAR-RPEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGE 51
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Match: A0A6H5K9Z6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z6_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 3.930e-7 Identity = 26/33 (78.79%), Postives = 31/33 (93.94%), Query Frame = 3
Query: 603 DMTTEDPYVRPSLKRAVVELYDTCHRLLSFKML 701
++TTEDPYVRPSL+RA+VEL DTCHRLLSFK +
Sbjct: 12 NLTTEDPYVRPSLERAIVELSDTCHRLLSFKAM 44 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8000.19318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8000.19318.1 >prot_Ecto-sp13_S_contig8000.19318.1 ID=prot_Ecto-sp13_S_contig8000.19318.1|Name=mRNA_Ecto-sp13_S_contig8000.19318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp MWAFYPIGTRLTFVPPSFPTLHDTSTSLRHQLHRKLGGMGGASEDLSSTSback to top mRNA from alignment at Ecto-sp13_S_contig8000:897..6966+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8000.19318.1 ID=mRNA_Ecto-sp13_S_contig8000.19318.1|Name=mRNA_Ecto-sp13_S_contig8000.19318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6070bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8000:897..6966+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8000:897..6966+ >mRNA_Ecto-sp13_S_contig8000.19318.1 ID=mRNA_Ecto-sp13_S_contig8000.19318.1|Name=mRNA_Ecto-sp13_S_contig8000.19318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8000:897..6966+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |