mRNA_Ecto-sp13_S_contig800.19316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig800.19316.1
Unique NamemRNA_Ecto-sp13_S_contig800.19316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Match: D7G0M7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 420 bits (1079), Expect = 1.470e-148
Identity = 202/208 (97.12%), Postives = 205/208 (98.56%), Query Frame = 1
Query:    1 NKNASDEVFDGSYSPPPSDPRFSTVSRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPMTELKTATAELQMRHPRDQPRVDQPVVGGSTIRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 624
            NKNASDEVFDGSYSPPPSDPRFSTV+RMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHP TELKTATAELQM+HPRDQPRVDQP VGGST+RDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGR DEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW
Sbjct:    3 NKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 210          
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Match: A0A8J2T189_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T189_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.490e-25
Identity = 81/210 (38.57%), Postives = 110/210 (52.38%), Query Frame = 1
Query:    4 KNASDE--VFDGSYSPPPSDPRFSTVSRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPMTELKTATAELQMRHPRDQPRVDQPVVGGSTIRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGAR-GKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 624
            KNASD+  V D +  PP     F++ +  E  +   T      + +  FDR ++  TNYSLG+ P  E KT T ++   HP  +PRVDQ  +GG    DGSY+L+  A DS++RGGGGG G LG+ F+VI G    G R GK A+  G RRTLN  +         + + PG  Y  + T +D      P +      RS+ V  RTRPW
Sbjct:   51 KNASDKEAVIDSTGFPP----CFTSTNTAEFNRDTTTFSRRYVKREPCFDRQSSCATNYSLGEAPF-ETKT-TNDVLFAHPLTKPRVDQGEIGGWKHPDGSYKLEQEAIDSIKRGGGGGAGCLGISFNVITGEEIPGIREGKRAI-YGARRTLNVTQ---------YREHPGDSYNPV-TMRDVPATAPPHQTTEMLKRSEDVHLRTRPW 243          
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Match: A0A7S2S3K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.420e-24
Identity = 72/215 (33.49%), Postives = 110/215 (51.16%), Query Frame = 1
Query:    4 KNASD-EVFDGSYSPPPSDPRFSTVSRMELTKSVHTPGYAIR----RPKEGFDRLNANRTNYSLGQ--HPMTELKTATAELQMRHPRDQPRVDQPVVGGSTIRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPER-GAGAPVRSDTVSGRTRPW 624
            KNASD +   G+   P  DPR   V +       H+   A+     R +  FDRL+A++TNY +      +   KT T+ +   HP+ +P+ +Q  +GG     G Y  +  A+++V+RGGGGGEG LGVRF+++       AR    ++TGPR ++N  E      ++ +GD    M  +I+TGK    F  P+  G    +R +    RTRPW
Sbjct:   67 KNASDKDSIQGAEGGPYHDPR--KVFKTTFASDYHSGASALSEKYVRERPAFDRLSASKTNYEITSPLETIPPFKT-TSHVLHAHPKTRPQPEQAAIGGWRTSTGEYCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPW-RQGSNRFGD--SDMQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275          
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Match: A0A7S2F937_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F937_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.390e-24
Identity = 67/168 (39.88%), Postives = 94/168 (55.95%), Query Frame = 1
Query:  133 KEG--FDRLNANRTNYSLGQH--PMTELKTATAELQMRHPRDQPRVDQPVVGGSTIRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 624
            KEG  +DR+++ +TNYSLG++  P   + T  +    + P D   V Q  +GG    DGSY  +  + DS+ RGGGGGEG LGV+F+++N  +D GAR +VAMRTG R ++N  E       D +GD      V+I     +R    P + A A +R D    RTRPW
Sbjct:  110 KEGPAYDRISSCKTNYSLGEYRPPGPAISTTHSHHPYKMPTD---VQQANIGGWKRSDGSYHCEHESNDSIVRGGGGGEGSLGVQFNIVNNASDPGARDRVAMRTGARVSVNKREPWSAG-CDAYGDPGPDGPVNIFGKARQRPQAPPHQTAQALLRPDHDVLRTRPW 273          
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Match: A0A7S2D1K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1K6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.040e-20
Identity = 79/215 (36.74%), Postives = 103/215 (47.91%), Query Frame = 1
Query:    4 KNASD-EVFDGS---YSPPPSDPRFSTVSRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPMTELKTA-TAELQMRHPRDQPRVDQPVVGGSTIRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMY--VDILTGKDRRKFDVP-ERGAGAPVRSDTVSGRTRPW 624
            KN SD E F G    Y  P    R +  S      ++H+  Y    PK  + RL A RTNY+LG +   E K A T+      P    RV      G       Y  D  AR+S+ RGGGGGEG LG RFD+ING+ D   R +V+MRTG R ++N  E     P     D  G  +  V+IL+G+ R + + P ++ A    R D     TRPW
Sbjct:   74 KNHSDLESFQGGPPKYKDPNVVYRTTKASDFNHESTLHSNEYMKSEPK--YTRLTAGRTNYTLGAY---EGKLASTSHTHHAPPCPIERVKGQATIGGWQTGNKYHTDIHARESIMRGGGGGEGSLGTRFDIINGKDDPSFRNRVSMRTGARVSVNKRE-----PWSQGADRYGDHHEPVNILSGQPRTRHNPPPQQNALQLRRPDQPLLATRPW 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig800.19316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M7_ECTSI1.470e-14897.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J2T189_9STRA4.490e-2538.57Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2S3K8_9STRA2.420e-2433.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2F937_9STRA6.390e-2439.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2D1K6_9STRA3.040e-2036.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig800contigEcto-sp13_S_contig800:9353..10470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size627
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Cds size627
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464072.8116996-CDS-Ecto-sp13_S_contig800:9352..93931681464072.8116996-CDS-Ecto-sp13_S_contig800:9352..9393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 9353..9393 +
1681464072.823793-CDS-Ecto-sp13_S_contig800:9884..104701681464072.823793-CDS-Ecto-sp13_S_contig800:9884..10470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 9885..10470 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig800.19316.1prot_Ecto-sp13_S_contig800.19316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig800 9353..10470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig800.19316.1

>prot_Ecto-sp13_S_contig800.19316.1 ID=prot_Ecto-sp13_S_contig800.19316.1|Name=mRNA_Ecto-sp13_S_contig800.19316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
NKNASDEVFDGSYSPPPSDPRFSTVSRMELTKSVHTPGYAIRRPKEGFDR
LNANRTNYSLGQHPMTELKTATAELQMRHPRDQPRVDQPVVGGSTIRDGS
YRLDTSARDSVRRGGGGGEGVLGVRFDVINGRADEGARGKVAMRTGPRRT
LNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDT
VSGRTRPW*
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mRNA from alignment at Ecto-sp13_S_contig800:9353..10470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig800.19316.1 ID=mRNA_Ecto-sp13_S_contig800.19316.1|Name=mRNA_Ecto-sp13_S_contig800.19316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig800:9353..10470+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGAACGCCTCGGACGAGGTCTTCGACGGGAGTTACAGGTAACGCAC GACCGTGTCACGCTGGTCCGGCTGGCTCAGAGTATTGGTTGGGATACTTT TGCGGCAGCTCGGAAACATTATCTCATCACAGCAACAGGATCGAAAGAAT GCGTCATGAGGGGAGTTTGAGGGCGCCAATGACACGTTCTCGCCGACACG AGCGGAGTGCCTCACCGGGCGATGCTGTATCACCCCCCTGTATTCTCAAT GCCAGAAATATCCAAGTGATCAAGCACAATCGGCCACACAAGGGCATTAT GCTGCATGCTAGTTGTGCGACCTTACCTGTACCCACACATATTTAGATTG CCTCATTTCTTTTGCGACCCATGTGTCACGCCGGTCCGATACGGTTTACA TCGTTCATTTTTTTTTTGTACGCATCCTTTCGCAGAGAGTTGAACCGTTC CTTGCTGAATCTTCACGAAATGATTATCAAAACCCGTGCATCCTTGCAAC GTCGTTCTTTCTTGCCGTACGCACGCAAAAAGTCCACCACCGTCGGACCC GCGCTTCTCCACCGTCTCGAGGATGGAGCTCACCAAGTCCGTGCACACCC CGGGCTACGCCATCCGGCGGCCGAAGGAGGGCTTCGACCGCCTCAACGCA AACCGCACCAACTACTCGCTCGGCCAGCACCCGATGACGGAGCTCAAGAC CGCCACTGCGGAGCTCCAGATGAGGCACCCTCGCGACCAGCCCCGCGTGG ACCAGCCCGTTGTGGGGGGATCGACGATCCGAGACGGGTCCTACCGCCTC GACACGTCCGCGAGGGACAGCGTTCGGCGCGGGGGCGGCGGCGGAGAGGG AGTGCTCGGGGTGCGGTTCGATGTGATCAACGGGCGGGCGGACGAGGGCG CTAGAGGGAAGGTCGCCATGCGAACGGGGCCGCGGCGGACGCTGAACAAC GCGGAGAAGGAGGTGCTGCATCCGACGGACGGGTGGGGGGACGTTCCCGG GGGGATGTACGTCGACATCTTGACGGGGAAGGACAGGCGGAAGTTCGACG TGCCAGAGCGAGGGGCTGGGGCTCCTGTCAGGAGTGATACCGTTTCGGGG AGAACGCGCCCTTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig800:9353..10470+

>mRNA_Ecto-sp13_S_contig800.19316.1 ID=mRNA_Ecto-sp13_S_contig800.19316.1|Name=mRNA_Ecto-sp13_S_contig800.19316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig800:9353..10470+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACAAGAACGCCTCGGACGAGGTCTTCGACGGGAGTTACAGTCCACCACC
GTCGGACCCGCGCTTCTCCACCGTCTCGAGGATGGAGCTCACCAAGTCCG
TGCACACCCCGGGCTACGCCATCCGGCGGCCGAAGGAGGGCTTCGACCGC
CTCAACGCAAACCGCACCAACTACTCGCTCGGCCAGCACCCGATGACGGA
GCTCAAGACCGCCACTGCGGAGCTCCAGATGAGGCACCCTCGCGACCAGC
CCCGCGTGGACCAGCCCGTTGTGGGGGGATCGACGATCCGAGACGGGTCC
TACCGCCTCGACACGTCCGCGAGGGACAGCGTTCGGCGCGGGGGCGGCGG
CGGAGAGGGAGTGCTCGGGGTGCGGTTCGATGTGATCAACGGGCGGGCGG
ACGAGGGCGCTAGAGGGAAGGTCGCCATGCGAACGGGGCCGCGGCGGACG
CTGAACAACGCGGAGAAGGAGGTGCTGCATCCGACGGACGGGTGGGGGGA
CGTTCCCGGGGGGATGTACGTCGACATCTTGACGGGGAAGGACAGGCGGA
AGTTCGACGTGCCAGAGCGAGGGGCTGGGGCTCCTGTCAGGAGTGATACC
GTTTCGGGGAGAACGCGCCCTTGGTAG
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