mRNA_Ecto-sp13_S_contig800.19315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig800.19315.1
Unique NamemRNA_Ecto-sp13_S_contig800.19315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: D7G0M6_ECTSI (Nucleoporin_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M6_ECTSI)

HSP 1 Score: 1203 bits (3112), Expect = 0.000e+0
Identity = 670/713 (93.97%), Postives = 674/713 (94.53%), Query Frame = 1
Query:  199 MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFRLTIVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFQPADGFPAKWERQPPSVYGAYCCGGVTVLAQALTQGDRLVLIGSDLITRAKRKREMHQEEHPSMREAVAEIGDSAXXXXXXXXXXXXXXXXXQAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXX--------RAVVRGGRSTSLAVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGVSL 2313
            MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYL PQI+ KSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQE GSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGP PVNSMFALLGLRRAERVLV+VVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIW RAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFRLTIVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    MFQPADGFPAKWERQPPSVYGAYCCGGVTVLAQAL QGDRLVLIGSDLITRAKRKREM QEEHPSMREAV E+GDSA                 QAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXX        RAVVRGGRSTS AVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYS+RRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGV L
Sbjct:    1 MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQETGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPGPVNSMFALLGLRRAERVLVEVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWIRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFRLTIVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----MFQPADGFPAKWERQPPSVYGAYCCGGVTVLAQALAQGDRLVLIGSDLITRAKRKREMRQEEHPSMREAVTEMGDSAGRQQ-------------QAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXXXXXXXXXXRAVVRGGRSTSGAVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSDRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGVVL 696          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A6H5J944_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J944_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 1.380e-85
Identity = 173/207 (83.57%), Postives = 176/207 (85.02%), Query Frame = 1
Query: 1714 MREAVAEIGDSAXXXXXXXXXXXXXXXXXQAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXX---------RAVVRGGRSTSLAVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGV 2307
            MREAV EIGDSA                 QAMGRVWAISERPVTL DNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXX         RAVVRGGRS S AVVGGV+SRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYS+RRELLCLTGAGLQVLTRLRPVDLLYDLL R+HVEGV
Sbjct:    1 MREAVTEIGDSASATDPTAGGGAGGRQQ-QAMGRVWAISERPVTLVDNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXXXXXXXXXXSRAVVRGGRSVSGAVVGGVLSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSDRRELLCLTGAGLQVLTRLRPVDLLYDLLVRDHVEGV 206          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A835YRU3_9STRA (Nup133 N terminal like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU3_9STRA)

HSP 1 Score: 252 bits (644), Expect = 5.600e-67
Identity = 230/747 (30.79%), Postives = 317/747 (42.44%), Query Frame = 1
Query:  232 FGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY--HTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSV--AYGFWYSVFSVGSPVPSRQC---------------------SRLAHKSSSGGPSPVNSMFALLGLRRAERV---------------------LVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNG--QSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFRLT----IVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFQPADGFPAKWERQPPSVYG----------AYCCGGVTVLAQ-ALTQGDRLVLIGSDLITRAKRKREMHQEEHPSMREAVAEIGDSAXXXXXXXXXXXXXXXXXQAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXXRAVVRGGRSTSLAVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLL 2283
            F  L +A+  ++ +L +DE                 +  YFC+P+T   LG  +  +S   LP  L   + R++  TFMGLLPE++HAW++VDN L LWNY        +F+ELEQVIV V L  P++GVF   V+++L VAT VEV+L+AVT      + G  R   + VR T F AS+DGV+M  I  HP GR+FMAGKDGNLYEL Y    A G W S   +G    SR+C                     SR A  ++   P P+  +     ++R  RV                     L+D+ VDPLRN LYT+D  G +  ++LG DG  T       ++W  + +FC+ +     Q       F+     + V+L VV A E   V LV V  SGMR+YL       +    + T    ++ +R PPP  LW++                                       QP  GF A   R                 AY    VTV+AQ A  +G      G  L+   +       +   S+ E   EI  +                     G V AI E P  L D P +  + AL   SG PS + N                    R  R+           RA     ++  A   V P PPL   P    G+ GGL  R   G+V L EL  Q  + +R LLCL+GAGL ++ +LRP+D+L+ LL
Sbjct:   15 FSALADAHGEVVSHLLQDEAQNTTLYSQLLDNPGGAAHGYFCEPHTADQLGLPLELRSTIPLPAELLDLQQRMQVATFMGLLPELNHAWLSVDNALLLWNYVDGADVVKKFQELEQVIVAVGLAVPRQGVFKPLVKYLLVVATPVEVVLVAVT------DGGDGR---LDVRPTQFSASSDGVNMNAIRGHPCGRIFMAGKDGNLYELIYEAGGATG-WLSYVGLGGSSGSRKCRKINRSTTPSSAVWNSFKQGRSRAARGAAITSPGPMAGLL----VKRLPRVTAARAXXXXXXXXXXXAGAASLLDLAVDPLRNALYTVDSTGVLRHYNLGPDGQQTVPVGGDLDLWAASGQFCRLHSTNRAQDVPDARAFEPGHGLEAVALSVVDACEDACVHLVVVASSGMRVYLGPSGRASEIDTAQATSPLRVLHVRAPPPAALWEH------------------------RKALANPAAGAAPPSQPPTGFAAGATRXXXXXXXXXXXXXXXXXAYYAHRVTVVAQRAAGRGXXXXXXGLGLVAICESGVARLDQPQVSLAETALEIDPA---------------------GGVLAIEEHPTVLGD-PAMASLLALTYTSGTPS-AHNEIARQLAEANEDAPVAPPSARSQRAAH-------PPRAADGDPNAPPAGE-VPPPPPLCLPP---RGWLGGL--RGARGVVPLRELATQHAAPQRRLLCLSGAGLHMVAKLRPLDVLHRLL 687          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A7R9YE90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE90_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.460e-55
Identity = 190/688 (27.62%), Postives = 309/688 (44.91%), Query Frame = 1
Query:  352 FCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ------DFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENG---SPR--NRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFA--LLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNG-QSGLSHLTFKDPKQ-----HQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSS----------GGKRHNFRLTIVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFQPADGFPAKWERQPPS--VYGAYCCGGVTVLAQA-LTQGDRLVLIGSDLITRAKRKREMHQEEHPSMREAVAEIGDSAXXXXXXXXXXXXXXXXXQAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXXRAVVRGGRSTSLAVVGGVVSRAKAWQRSSRYASRPVAPSPPL---VASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGVS 2310
            F +PY +++ G  +  +    +P AL+ +   ++CM+FMGLLPEI  AW+++DN L+LWNY         DF +F  L+Q+IV+VALVPP+ GVF ++V+++LAVAT VE++LLAV + E+P+  G    P   N  + +R T+F  S+D V+M+K+    +GR+FM G DG+LYE  Y+    F   +  +G  +  R+C +L H +     SP++S+    L  L    + LVDVVVD +R +LY L     ++ +DLG +G+          +      +C+ + +  + G     F   K       +IVS+ VVP TE+  V LV V+++G R Y+S  S              +    L++V +R PPP ++                                          +P +G+P ++  Q  S  V+ AY C G  V A+    + D + +   D  T                RE  A +   +                  A  +VWA+ E    + D   I R   +     + +P+                  R++    R   L++ G +              +R   P+PPL    A     AG  G  N ++V   V + E+ +Q +  RR  L L+  G+    + RP+D LYDL++R+ + G+ 
Sbjct:   11 FPEPYQSTW-GGAVHYEGVTAVPPALTEQYRSLKCMSFMGLLPEISCAWLSIDNKLFLWNYERARYQTDADFLEFDGLDQIIVSVALVPPRPGVFREKVKYLLAVATAVEIVLLAVAF-EEPEGTGVLGQPLGLNGTMTLRPTSFSVSSDNVTMMKLCGTNSGRIFMGGSDGSLYEALYANEEEFALGL-GLGFGMAGRKCRKLNHSA-----SPLSSLVPGFLKQLSAPSKPLVDVVVDDVRQILYALREDNSLEGYDLGVNGDLLKPFGTRIQLRREVKHWCERHTSSYRPGPDSRLFDSTKPTSGALDKIVSMNVVPLTEANNVHLVLVSNAGFRFYVSTVSRYHSSXXXXXXXXAKRPTTLSVVHVRAPPPVEVGS-------------------------------------ARGEPMEGYPPRYSPQTSSRSVHSAYYCHGCLVTAEGGADEADTVRVSQPDFCTE---------------REVAAGLSHWSVTSGRANAALQEATQSIAASQKVWALDEVAPLVND---ISRAHLVALAMASRTPALPELPTFLNPTSSSGSGSRSLPTSTRPR-LSLRGPI--------------ARAAPPAPPLSLAYADRDSGAGI-GPANQKEV---VPMNEMAMQLWLPRRTFLGLSNVGIHRFLKRRPIDYLYDLVSRDDIRGIG 616          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: L8HDY8_ACACA (Nucleoporin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HDY8_ACACA)

HSP 1 Score: 201 bits (511), Expect = 5.310e-50
Identity = 119/340 (35.00%), Postives = 182/340 (53.53%), Query Frame = 1
Query:  385 PQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGG------KRHNFRLTIVQIRCPP 1386
            PQ R      LPE L +    +EC  F+GL PEI+ AW+TVDN L LWNY ++++  + + +Q+IV+V L+PPK+ VF+++V++VL +AT VE++LLAV +     E+ +P+   I +  T    S D V+M+KI     GR+FM G DG+LYEL Y    G W+S          ++  ++ H            M AL     A+  ++D+V+D  RN+LYTL   G ++++DLG DG        + N+   A   C      Q G         K+  + S+ V+P +ESK + LVA+T S +R+Y S  S  G       +   +L ++ IR PP
Sbjct:   86 PQFRLLKMIPLPETLHQMYKSIECKCFLGLFPEINRAWITVDNQLCLWNYESKEYAIWTDQDQIIVSVGLIPPKRDVFSEDVKYVLVLATPVEIVLLAVWF-----EDNTPQGE-IHLEPTRIALSADNVNMVKIVGTKRGRIFMGGSDGSLYELEYQADEG-WFS----------KRARKINHTR--------GIMSALTSYWSAKPAIIDIVIDESRNILYTLSARGAIEVYDLGTDGLGFQHVAAMSNVIASAETLCPRLKFTQIG---------KEASVKSIAVIPKSESKYLTLVAITSSALRLYFSALSLSGDAAAIPSQRPTKLELIHIRFPP 391          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A7S3M7K2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7K2_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.500e-49
Identity = 201/740 (27.16%), Postives = 301/740 (40.68%), Query Frame = 1
Query:  232 FGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRE------------------LEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFC---QGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFR---------------LTIVQIRCPPPEKLWQYLHQHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFQPADGFPAKWERQPPSVYGAYCCGGVTVLAQALTQG-DRLVLIGSDLITRAKRKREMHQE-EHPSMREAVAEIGDSAXXXXXXXXXXXXXXXXXQAMGRVWAISERPVTLADNPEIGRVRALLALSGAPSPSDNNXXXXXXXXXXXXXXXRAVVRGGRSTSLAVVGGVVSRAKAWQRSSRYASRPVAPSPPLV---------ASPGGSAGFPGGLNARDVGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHVEGVS 2310
            F +L  A+  L   LR DE + ++  Q +       S  Y+ +PY   + GP +   SF  LP+ +  +  ++EC +FMG LPE+   W+TVDN L+LW Y +   T F                    + +VIV+VAL  PK GVF   V++VL VA+ VEV+LLAVT  E+            ++  T +   +D V+M+K+    +GR+FMAG DGN+YEL YS +   W ++   G      +C ++ H + +     +   F L      E  LVD+ VD +R V+Y +   G +  F LG+ G  TT   + FN+   A       +    G                ++SL V+P TESK V +VAV  +G+RIYLS  ++     N+                + +  +R PP     +                                              P+    Q   V  A    GVT+LA    Q  D LV +  DL+ RA     +    +HPSMRE V  IG                     + G+++AI E    +   P++ R+RA+ A S  P    N+               RAV  G         G  +S        +  ++   A   P+V         A P G+      LN   + G +    L     S +R+ L LT  G+  L +LRP D+LY  LA  HV  ++
Sbjct:    3 FKILEKASETLQDKLRLDESALDIADQFSFRPDMHGSHRYYTEPYKTQW-GPLLEYGSFTALPKRILDQYTKIECASFMGTLPELGRVWVTVDNKLFLWKYTSAPSTSFPNEVAEDVDAISEDCEVYDGISEVIVSVALSAPKPGVFLDTVKYVLVVASPVEVVLLAVTCDEQGNN--------FKLVPTAYTMPSDNVAMVKVVGSQSGRIFMAGNDGNVYELDYSNSESVWSALVDAGGEHSRHKCRKINHFAWNWRLVHILPPF-LKSFAGEEDSLVDLAVDNVRQVVYAITAKGVLSAFYLGSTGTETTLFLSSFNVLDAARTHLTVSRSLPEGSPKPESFANTTAPGFNVLSLHVLPLTESKKVHVVAVLGNGIRIYLSLLTANRGLFNYMPGPQQQSGNYSVPGGVEVAYVRSPPSPAALRVCSNSSGRLSSASAPDGIQSAGGAGAGAELENGSA-----------PSYMPSQALKVSSALYSQGVTMLALDKQQHPDELVCLFEDLVGRAHLTLGLPPAYQHPSMREGVC-IG----------------LDETTSGGKIYAIKENCAQI-HFPDVARLRAMFAHSSTPP---NSSIRDASHHFDTSLESRAVAAGAHQAG---GGSGLSWLVGQDGDNTQSAVTPASEVPVVFGADALAMAAKPAGTGFDTFDLNQVALLGEMSWQHLPCSSVSLQRQFLVLTNQGIHTLRKLRPADVLYRHLA--HVNSLA 695          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: I2CP24_NANGC (Nuclear pore complex protein Nup155 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP24_NANGC)

HSP 1 Score: 187 bits (475), Expect = 7.760e-47
Identity = 131/404 (32.43%), Postives = 204/404 (50.50%), Query Frame = 1
Query:  244 RNANTVLLHNLRRDELSPELQKQLTAT---GMASTSQAYFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ-DFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAE-RVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYL-SCGSS---GGKRHNFR---LTIVQIRCPPPEKLWQYLHQH 1419
            R A    +    R E  PE  +   A+   G  S    ++  P+ +   GP +  +S    P A+ R    ++ M+F GL  EI  AW+TVDN+LY+W+YHT+       +L+Q+IV V LV P   VF   V H+L   T   V L A+ +     E+G+P +  +QVRRTNFR STDGV M K+     GR+F+AG+DG++YE+ YS     ++          S +C +L   S   GP+ +     L  L +     +VD+VVDP R++LY+L     + ++DLG   ++ T      +++T A R+ +    G+       F      +++SL V+  +ES T  L+AV+++G R Y  +C  +   G K    R   L +V +R PP   +W+ L  H
Sbjct:   42 RQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPFYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEASHAIVDDLDQLIVAVGLVRPNPEVFKDTVTHLLVACTPSAVELFALCF-----EDGTP-DSALQVRRTNFRVSTDGVVMRKVVGTRTGRIFLAGQDGSVYEIQYSNEKDLYF--------YSSNKCRKLNRTS---GPASLAVSAVLRHLWKTNVSEIVDLVVDPTRSILYSLSADNLIQVYDLGEKDDACTSLGIKEDVFTMALRYFKHRHRGEQ----QRFTKGHPFRLLSLHVLSCSESATKHLLAVSNAGHRFYFETCPKTPYIGSKLFAPRPSTLALVDVRLPPKPSVWEALRGH 424          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: K3X038_GLOUD (Nucleoporin_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X038_GLOUD)

HSP 1 Score: 172 bits (436), Expect = 2.630e-43
Identity = 121/381 (31.76%), Postives = 181/381 (47.51%), Query Frame = 1
Query:  277 RRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQDFTQFRELEQVIVTVAL-VPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSGG---------KRHNFRLTIVQIRCPPP 1389
            R D   P+L  QL      S  Q YF +PY   +    ++  +   LP  ++   +  + +T  GLL  ID+AW +VD  L+LWNY  +      E +Q +V V + + P  GVF  +V+HVL VATTVEV+L+AV Y     EN  P+   ++++RT    STD   + +I    NGR+F  G DG++YE  Y        +  S   P  ++ C ++AH S+     P      L+GL  +   +++   D  R +LY+L   G + LFD G  G  T    ++ N+    A++ +     +              QIVSL V+P  ES  V LVAV  + +R Y++  S             +   RL IV IR PPP
Sbjct:   32 REDAQYPDLYDQLANQ---SEPQNYFFEPYATQWCPQLVKKGNVIPLPGVIATSLEDTKSITLSGLLHAIDYAWTSVDTRLFLWNYKARGKFAVFEFDQAVVAVGICMKPAPGVFTDKVQHVLVVATTVEVLLVAVLY-----ENNDPQGGAVKLQRTKLSVSTDNCVVRRIVTTRNGRIFFGGSDGSVYEFLYGPD-----AESSSAIPFFNKPCKKIAHTSTYAAYLP----SFLMGLTSSPGKILEFANDEERQILYSLHENGHITLFDQGVSGEDTKVVCSL-NLLEAGAKYARENRRTRVSCPDERLFQNTNMQIVSLAVIPREESAFVNLVAVASNAIRFYITVYSRRTYTVGNAIPRTKRPSRLEIVYIRLPPP 394          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A1Y2C791_9FUNG (Nucleoporin-domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C791_9FUNG)

HSP 1 Score: 179 bits (453), Expect = 8.460e-43
Identity = 108/313 (34.50%), Postives = 174/313 (55.59%), Query Frame = 1
Query:  391 IRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHT-QDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALLGLRRAERVLV-DVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSC 1323
            + ++    LP+ L RE D ++C  F+GL PEI  AW+T+D+ L+LWN+ + ++F  F E +QVIV+V LV P  GVF  E+ ++L VAT +E++L+AV Y+E            + + RT+   ++D VSM  I    NGR+FM G +G LYEL Y    G W++          R+C ++   +++       S+F        E   V  +++D  RN+LY L    +++LF LG DG    +     +I+++A ++ +      SG+    + DP+  QIVSL ++P +ES  V L+AV+ SG R+Y +C
Sbjct:   48 VAAERMIPLPDQLYREYDFLQCRCFLGLFPEIHRAWITIDHQLFLWNFDSPEEFVVFDEQDQVIVSVGLVKPLPGVFLDEINYLLVVATPIEIMLVAVAYNEAKGPAA------LNLYRTDITIASDNVSMTSIVGSSNGRIFMCGSNGRLYELQYQSEDG-WFT----------RKCRKIDLTTTA------YSLFVPTIFNFVEEDPVRKIIIDAQRNILYALTERSNIELFYLGVDGKDFKKLFRQTDIFSQAQKWLEN-----SGVYPHPYLDPRNFQIVSLHIIPPSESHNVHLMAVSSSGYRLYFAC 332          
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Match: A0A3R7FJY6_9STRA (Nucleoporin_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7FJY6_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.620e-42
Identity = 128/400 (32.00%), Postives = 190/400 (47.50%), Query Frame = 1
Query:  220 DHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQAYFCDPYTNSYLGPQ---IRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNY-HTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAVATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAHPNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSSGGPSPVNSMFALL--GLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGADGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGVVPATESKTVALVAVTDSGMRIYLSCGSSG----GKRHNFRLTIVQIRCPPP 1389
            DH+    L  ++ VL      D  SP+L  Q+ A     TS  YF +PYTN+  G Q   +  +     P A++   D +   +F GLL EI HAW++VDNVL+LW+Y   + F  F  ++Q I  VA+  P  GVF   V+HVL VAT  ++ L+ + Y     E+  P N  I+++ T    STD V++ KI +   GR+F  G DG+L+E  Y    G  + +         R+C +  H  S     P  S+F  L   L  +   +VD+ +DP R++LY       + ++DL   G      +   +I   AARFCQ      +              I S+ VV   ES ++  VAV+ +G+R YLS  + G      +    L +  IR PPP
Sbjct:   16 DHEELEALSQSHKVLEQAYSVDSKSPDLVDQI-ADHSEPTSHNYFFEPYTNTAAGWQAQLVHKQKLLPYPAAITSAYDNMRSGSFSGLLQEIHHAWVSVDNVLFLWDYTRAERFVVFDGIDQTISAVAIAKPIPGVFKAFVKHVLVVATASDMRLVPILY-----EHSDPVNGAIRLQATKLCISTDDVTVKKIVSTAGGRIFFGGSDGHLHEFVYDATEGMLHQLGW------KRKCRKETHTQSLSTYIP--SIFRSLTGALTSSHGKIVDLTIDPERHILYVTQEPATIHVYDLLPPGELKLVASK--DIHAEAARFCQRNHRTWTSCPEPRLFTTNMTTISSVSVVGRDESASIHAVAVSSTGIRFYLSTFTPGYFSSSSKRPTHLDMSHIRLPPP 399          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig800.19315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M6_ECTSI0.000e+093.97Nucleoporin_N domain-containing protein n=1 Tax=Ec... [more]
A0A6H5J944_9PHAE1.380e-8583.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YRU3_9STRA5.600e-6730.79Nup133 N terminal like-domain-containing protein n... [more]
A0A7R9YE90_9STRA4.460e-5527.62Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
L8HDY8_ACACA5.310e-5035.00Nucleoporin, putative n=1 Tax=Acanthamoeba castell... [more]
A0A7S3M7K2_9STRA2.500e-4927.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
I2CP24_NANGC7.760e-4732.43Nuclear pore complex protein Nup155 (Fragment) n=1... [more]
K3X038_GLOUD2.630e-4331.76Nucleoporin_N domain-containing protein n=1 Tax=Gl... [more]
A0A1Y2C791_9FUNG8.460e-4334.50Nucleoporin-domain-containing protein n=1 Tax=Rhiz... [more]
A0A3R7FJY6_9STRA1.620e-4232.00Nucleoporin_N domain-containing protein (Fragment)... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig800contigEcto-sp13_S_contig800:125..7548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score1207.6
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7G0M6
Preferred nameNUP155
Model size2313
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005886,GO:0005911,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007088,GO:0007096,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007346,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009506,GO:0009507,GO:0009536,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010564,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030054,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051783,GO:0055044,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1901987,GO:1901990,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
Exons9
EggNOG free text desc.protein localization to nuclear inner membrane
EggNOG OGsCOG5308@1,KOG1900@2759
Ec32 ortholog descriptionNucleoporin, Nup133/Nup155-like, C-terminal
Ec32 orthologEc-07_001530.1
Cds size2115
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig800.19315.1prot_Ecto-sp13_S_contig800.19315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig800 125..7350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464072.663885-CDS-Ecto-sp13_S_contig800:124..7391681464072.663885-CDS-Ecto-sp13_S_contig800:124..739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 125..739 -
1681464072.6804376-CDS-Ecto-sp13_S_contig800:1305..14851681464072.6804376-CDS-Ecto-sp13_S_contig800:1305..1485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 1306..1485 -
1681464072.6900706-CDS-Ecto-sp13_S_contig800:2046..22331681464072.6900706-CDS-Ecto-sp13_S_contig800:2046..2233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 2047..2233 -
1681464072.7008636-CDS-Ecto-sp13_S_contig800:2581..26821681464072.7008636-CDS-Ecto-sp13_S_contig800:2581..2682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 2582..2682 -
1681464072.7154582-CDS-Ecto-sp13_S_contig800:2975..30831681464072.7154582-CDS-Ecto-sp13_S_contig800:2975..3083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 2976..3083 -
1681464072.7285712-CDS-Ecto-sp13_S_contig800:3942..43291681464072.7285712-CDS-Ecto-sp13_S_contig800:3942..4329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 3943..4329 -
1681464072.7397552-CDS-Ecto-sp13_S_contig800:4759..49211681464072.7397552-CDS-Ecto-sp13_S_contig800:4759..4921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 4760..4921 -
1681464072.7514114-CDS-Ecto-sp13_S_contig800:5955..61381681464072.7514114-CDS-Ecto-sp13_S_contig800:5955..6138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 5956..6138 -
1681464072.7647285-CDS-Ecto-sp13_S_contig800:7158..73501681464072.7647285-CDS-Ecto-sp13_S_contig800:7158..7350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig800 7159..7350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464072.775613-UTR-Ecto-sp13_S_contig800:7350..75481681464072.775613-UTR-Ecto-sp13_S_contig800:7350..7548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig800 7351..7548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig800.19315.1

>prot_Ecto-sp13_S_contig800.19315.1 ID=prot_Ecto-sp13_S_contig800.19315.1|Name=mRNA_Ecto-sp13_S_contig800.19315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=705bp
MPAVAEEDHDPFGVLRNANTVLLHNLRRDELSPELQKQLTATGMASTSQA
YFCDPYTNSYLGPQIRSKSFAMLPEALSRERDRVECMTFMGLLPEIDHAW
MTVDNVLYLWNYHTQDFTQFRELEQVIVTVALVPPKKGVFNKEVEHVLAV
ATTVEVILLAVTYHEKPQENGSPRNRRIQVRRTNFRASTDGVSMLKIAAH
PNGRVFMAGKDGNLYELTYSVAYGFWYSVFSVGSPVPSRQCSRLAHKSSS
GGPSPVNSMFALLGLRRAERVLVDVVVDPLRNVLYTLDLAGDVDLFDLGA
DGNSTTQKNNVFNIWTRAARFCQGYGNGQSGLSHLTFKDPKQHQIVSLGV
VPATESKTVALVAVTDSGMRIYLSCGSSGGKRHNFRLTIVQIRCPPPEKL
WQYLHQHQEAAGAAPVPADGGGGTPTAQQQQQQQQQQQQQMFQPADGFPA
KWERQPPSVYGAYCCGGVTVLAQALTQGDRLVLIGSDLITRAKRKREMHQ
EEHPSMREAVAEIGDSAAAAAVPTAGGGAGGRQQQAMGRVWAISERPVTL
ADNPEIGRVRALLALSGAPSPSDNNGTTAANGGGGGGGGSRAVVRGGRST
SLAVVGGVVSRAKAWQRSSRYASRPVAPSPPLVASPGGSAGFPGGLNARD
VGGMVQLPELGVQPYSNRRELLCLTGAGLQVLTRLRPVDLLYDLLARNHV
EGVSL
back to top

mRNA from alignment at Ecto-sp13_S_contig800:125..7548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig800.19315.1 ID=mRNA_Ecto-sp13_S_contig800.19315.1|Name=mRNA_Ecto-sp13_S_contig800.19315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig800:125..7548- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCACCGCAGCACGGCAGCACCGCAGCACGGCAGCTCGGCCGCACGAC AGCAGTGCACGTTGGTTGGCATCAACTCTGGGAGAAACGAAGCAAAGCCA ATACTCGTGTTTGCTGCAAAGCTGTGCTCCACGCGTTGTTGCTCGTTGCC TGGATTTGGGCATCCACTTGATCGATCGGTGCCATCATTTCTTAGATCAT GCCCGCGGTAGCCGAGGAGGACCATGACCCGTTTGGAGTGCTTCGCAACG CCAACACTGTGCTGCTGCACAACCTCCGCAGGGACGAGCTCTCTCCCGAG CTCCAGAAGCAGCTGACGGCGACTGGGATGGCGTCCACGTCGCAAGCTTA CTTCTGCGATCCCTACACCAACTCGTACTTGGGACCTCAGGTGTGACAAA GGCAGCCAGCCTATCGGCGCGCGCAGCAGATAGCCACACTTTTTGAATAT TTGCGACGGGAGCCCCTTGGCGAAAGGCACAGAAAGATAGGTGCCACAGG ACCCCAGCAGTATCGGGCACCATCTTAGCAATAGAGATTTTCCCCGTACA GCAGTAGTGATATTGGTTGCAACCGTTTTCTGGCGTTGCCCTCTCACTCA ACTGAAATGCATGCACGCCTCATTGTCTTTGCGGAAGAGCACATAGCTGC GGTGAGAATTGCGCACTTGGAACATGCGGGGTTCAGGGTTGTCAAATTTA GTCGGCGGCGCCGGTGCTCTGTCAACCCAGATGGGACGTCGGATATGCTC CGTAATGACTGCAGCATTTTGCGCGTTTACTTCCTCCTTGGGGTCAAGAT TGCAGCTGAGCGTATTTGGGAAGAATTAATACTCGTACAACGTCCCGTTC GTTACGCAAATTCCTATAGCAGTACCTGGTACTGTAGTGCTGATCCTCCT TCGAGGATCTTAAGCTTATACGATCAGCCGGTGGAGTTTGAGCCATCAAA CGACGGACGATACAGGATCCCCTATTCCAATGTTTTCACGCCAAAGTTCG GTGTTCTCGTACAAGACTTCACTATCAGCACGCATAAATATATATGCACG TGGCGAAGCCCCTCTTGTACCCCGTCTACCGTCTACCCTTCCCCCGCTTC TGGTTCATCCTCTCGTCAAACGTAGCTTGGGCCGGCGAAAACCCGGCGTG TTGCTCTCTCGGTATTGAAGGGATGCGAGGTCTGTGGTCTCTAACGGTTA TGGCAAGCGTTTGCATGAGTACGCCCCCCTCTCCCGCCGCGACCCTAACC CACATTCTCCTCAAGCATGATTGGTTTGTCCTCTCCCGAGACTGGAAAAA CTCCGTGAAATTTCCGGAATCCACACCACTTTCGCGGACCGGAACCTAAC CGTCCCATCGTCATCCCTACCACACCTGTTTCCGTGGACGCGTTTTTTCC GGCGGCGTAGATACGGTCGAAGTCGTTCGCGATGCTGCCGGAGGCCCTGT CGCGAGAGCGAGACCGCGTCGAGTGCATGACCTTCATGGGTTTGCTGCCG GAGATCGACCACGCGTGGATGACGGTGGACAACGTGCTCTACCTCTGGAA CTACCATACCCAGGACTTCACGCAGTTCAGGGAGCTCGAGCAGGTGCCGA CGCGTGCGTGCGTGTCGCCGCCCTCTATTGTTTTTTTTCCAAGCATACCA CGTACCATCACAGAAAGAACACCTGTTGGAGATGTATCCCCCGTAGTAGT CGAACGGGATGTGAAGTCTTCACAATGAGTGAAAGGGACACAAGCCTGCT GGATACTGCTGGGCTTGTGTTGAGTCTATTTAAGCCTTTGCACCATTGTT GTTCTTGCATGTCGATTTAAGCCTTTACATTGAATTGTTGTTCTAGCAAG TCGTGAGTCTATTCAAGCCTTCACACTGAAATGTTGTTCGTGCATGCCGT AACGTTACGCTGCGCGTCCCGACGAGAGATACCTCCACGCAGCAGTGGTA ATCTGTTGTTGGTTGATGTTGCGTGTTTGCGGTTCTGCCGTGTCACCTCT CATGGACGCTAGACCGCACGTGTTGCACCTATACAAGGGAGGAAGGACCC CCCCGACCGAAAACTGCACTCGAAAAACAAACCCTATTACCCCCTGAAAA CTTCAACCTTTCGTTCCAGCGATGTAGACACATCGTTACGCAACAACGGT GTAAATTAGAAGAGTGGGATTCATGCGGAACACGTTCCAAGTGTGAGAAG AACCGATCCTTTGCAGCAGACACGCGCAGAAAAGTGGCGTGCTCCTTCGT TGCAGAGCATAAAATAGTTTCGAGCGGGTGGTGCCTTCCGTGGTCCAAAT CTTTGCTGCCTGCGTTTGTTGAACCCCGCCCCCTCTGTCCTCTCCAGGAC GCGCGGTCAATGGTCTAACCGCTAAGGCACGCAAAGCATAAGAGTAGCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAA CGCCCAGCCCCCGGCGCGCCCCCCGGCCCCGAGGCGCGTAGCCACGGCCG AGCAACACACGGGNNNNNNNNNNCCCCCGGGGCGGGGGGGCTGGGTCCAC CCCCCACCACCCACAAAAAAAAAAAAGACCCCCCCCCCCCCCCCCCCCCC CCACGCAATGGCAAACCGGGGTCCCAGGTGATCGTGACGGTGGCGCTGGT CCCCCCCAAGAAGGGCGTTTTCAACAAGGAGGTGGAGCACGTTCTCGCGG TCGCGACCACGGTAGAGGTGATTCTGCTCGCGGTAACGTACCATGAGAAA CCGCAGGAGAACGGGAGTCCCAGGAACCGACGGATACAGGTGTGCGTGTG TGTGTTTCGTTGTTGGCATCGACCGCGGTATGACCGGTTGGCCAACGTAA ATAGGTGGTACGTCAGTTGCACATGGGGATATAAATGCGAATCCCCCCTC CATCCCCCCGGCAGCAAGGGCCCCTAAATGATAGTCGCGGTACCATCATC GTCACAACAGAATGTTGGCAACCACAGGATCATGACCAACGCAACAGCGG CGGCGGCAGCGGCAGCAGCAGCAGCATCATTACCAACCAGTAGCAAAAAC GCAACGGCAACAACCGCAGCAGTAACAGAAAGCGAACAAACAATCAACAG CAGTAGTAGCTGAACAACAACCACACACCAACTATCAAGAACAACCCCGC CAACAACCACAGCAACAACGCTAACACCACCACCACCACCCACGACACCA CCACTACCGACCAACCCAGGTGCGACGCACCAACTTCCGGGCCTCGACGG ACGGCGTCTCTATGCTCAAGATCGCGGCACACCCGAACGGCAGGGTCTTC ATGGCCGGAAAGGACGGCAACTTATACGAGCTCACCTACAGCGTGGCCTA CGGCTTCTGGTACTCGGTCTTCTCTGTGGGCAGCCCGGTCCCCTCCCGAC AGTGCAGCCGCCTCGCCCACAAGTCCTCCAGCGGGGGGCCAAGCCCCGTG AACTCCATGTTTGCCCTGTTGGGCCTGCGGCGCGCGGAGCGGGTGCTTGT GGATGTGGTGGTGGACCCCCTCAGGAACGTTCTCTACACGCTCGACCTGG CGGGGGATGTAGACCTGTTCGACCTCGGAGCCGATGGGAACAGCACCACC CAAAAGGCATAGTTCGTTGTTTGTTGTTTGTCTTTGCCCTGGTTCGCACC GCCGGAAGTTAGCAGGTGGCATGAGATACCACACCCCACTTTCCTCCTGG AACCGTGTTCGAAGCTCGATGCTGTGAATGGCGGCGTCCGAACCGCCTCG TGGAGAACTTTCTCGAAAACGTACCGTTCTTTTTTTCTTTCGCCCTCGTT CGTCGCCGAGTGATCGAACGTTGACATTCTGTCCCCTGGGTGTTTGTTGC GACCTTTCGATATGTGTGGGTGTGTGTCGAGGGCATGGTTCAGAGCGCTG CGAGGAGGTAGGTCCTTCTCCGTATCCGGTAGGAGCGGTGGCGGCGGCGG CGGCGGCGGCGGCGTTCTTGTTGTGTGGCTTCGGTTTGTGTTTTGCTTTT CCTTATGGTCGCCCATTGCGGTTCGGTCACAACGCCTCTGCCAATGTAAC AGCACGAGATCAGAGCGCCAGGAAATGTGACAGCAAGAAGGGTGAACCAC AGAGGCCGTCGTTCCCGCGGGAGTAGGGCATCGTCGTCTTGTATCTGTGT CTTGTGACCTTGTGGTGCACCTCTTGTTTGTCCCCACGGCGCTCCCAGAA GGTATCGATCATGTTACCCTTGCTTCTAAGGAAATGTCCGAAGGATATAG TGTCCTTTGCGCGGTTCTTTTCCTTGTTCCCCTCCCTAGTCTTATTGATA TACCTGCCAGGCACGATGCTTCTGGAAAAGCTACGGTATCCTTGAAGCGG GTGCGGCGGTCTACTGCTGTTGTCCATGTTATAAGAGACTTACCTGTAGG GCCCTTCCTTATTCCTGTCTGTCGTCCCCCCTTCTGTTGTTCGTCCTTTG TGGCTCTGCTGCCAGAACAATGTGTTCAATATCTGGACAAGGGCGGCCAG ATTTTGCCAAGGCTATGGGAATGGTCAAAGCGGATTGTCCCACTTGACCT TCAAGGACCCTAAGCAGCACCAGGTGAGCACTTTCTGCATGGAATGGATT AAACCTAACACAGGTAGCAGCTTTTGCAAGGGTAGCCTGTTGCTGTTGGT CGCGAGCCTGTACAACATGAACAACACATCAAACTTGTTGCATGCATGCG GGCAATGTGACCACAGGAAATAGTTTTCCTTGTGCTCTTTCAACATCGAT ACCGACGTCTTTTGAGGGCACACCTTACGCATGCATGCGTATGGGCAGAA AACGGCGAGAGCAACCCTTGAGTATTGGTTCCATTCTACCCGTTGGGAAA AAAACAAAAAATGCAGATTGTTTCTCTGGGAGTGGTGCCTGCAACAGAGA GCAAGACGGTGGCACTTGTTGCGGTAACCGACTCCGGGATGCGGATCTAC TTGTCTTGCGGGTCCAGGTGCGATGATGCATCGTTTAATATGTGGCCGTC AGGTTTGTTTTGCGGCGTTCGAGATGTAGCCCTTGGTTCGTTCCTTTCTC TCTGCCGATTTTTCCTCCTTGCTGTTTGTTTTACAGTATTGTTTCGCGAA AACTGTCTCGGAAGAAGAGGTAAAAACACCTGTTTGTTCTGTGACCGTAA AATCGCCCTTGAGGTCGTCGGACCAGAGGCCAGATCGATTGTTGTGAGCA ACGCTTCGGCGTTGTCACAAATGTGCTGTCACCAAGTCTTCGACCGTTAG TTGCTCCCCTCCCTCTACCCCTGACGCCAAACATCCTGGCGGCGAACGAT GTGAATGATTGGTAGCGGTGGCAAGCGGCACAACTTCCGGCTCACCATAG TGCAGATACGGTGCCCCCCGCCGGAGAAGCTTTGGCAGTACTTGCACCAG CACCAGGAGGCGGCGGGCGCGGCTCCGGTACCTGCTGATGGCGGGGGAGG TACCCCGACGGCGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCAGC AGGTGCGTACAGCAGTACCACCAATATATTTATTAATAGTACTCGCTACG CTCAGAGTGGTAAATACTGCAGTGTTTTGTGTGCCCTTTTTGACCTCGGC AAGGACTGAATCGCGCCACAGCCGTGTGCGGTGGCCTCTTCGAGTCGAAT CCACGCTGTCATTCGAGCGTATGTGATGCTGCAGTCAGCACCGGCGGCGC CATGTACACCTGTTGGGTGGTACATGAAGCGGGAAACTGCAGTCGGACAC GCTTTTGGACAAAAGGACTCAATTTTGGTTTTTCTGGGCCCACAGAACAA CACGAGAAGCTTCTTCGAGTTGCACTGGTTGCAGTTTTGCAGTAAGTCTT TCCCCTGCTGATTGAGGCATCGCGTAGAATCGACAGGGTTTCCTTGTGCA CATCGTTAGTTGCCACAGCTCTGTTTCATTCGTTTTCTCTTTCTCCCCTT TTCCCTCTCCGTCTCCGCCCTCTGACTGTCTCTGACCGTCTCTGTCTGTC TCTGTCTGTCTCTCTGTCTCTCTGTCTCTCTTTCTTCCCTTCTCCCGTCC TTCTACTCCTCAGATGTTCCAGCCCGCAGACGGTTTCCCGGCCAAGTGGG AAAGGCAACCGCCTTCCGTGTACGGCGCGTACTGCTGCGGCGGGGTGACG GTTCTAGCCCAGGCCTTGACGCAGGGGGATCGTCTCGTACTCATCGGATC GGACTTGATCACCCGCGCCAAGCGCAAGCGTGAGATGCACCAGGTGACAG AGAGAGAGAGTGTGAGAGATCATTACAGAGAGAAGGAAAGAAAGAGAGGG ACGGGGAGAGATCTCAGGGAGGAGTTCAGAGGCGTTTGATGATGCGCAGG ACCGTATTTGTTGTTCGTAAGTCACTTTTTGTTTTGCTGTCTGATGCACC GGGTGAAAAAGAGAGAGAGAGTCAGGAAGCAGTTCATAGGTGTTTTATGG TGCGCAGCGCCGTCTTCGTCGTTCGTACTTCCAAAACTGTTGCTGTCATC GATCTTGATATTATGGTATTATCTGTTGTTGCTGCTTTCTCTCTCAGGGT TGTCGCGGCTTAAGCCCCCCGAAACACGCGTTTCAATTTCGGGTTAGTAC GTTCGATATACTGGGGCCCTTATTCATCGCCACTTTTTTTTTTTGTACGT TTCTTGCTTTGAACGATACTTACTCGACCTTCTCGACCCACGTTTTTCAA GTTGCTTGCTTCGAACGACTCCTGCGCGACCTTTCTCGACACGCCTCGTG AAGTTTCTTGCCCCGGACCACACGTCTTTGCACACGCACACGCTAACCCC TTACCGCAGGAGGAACACCCGTCCATGAGAGAGGCGGTCGCCGAGATCGG CGACTCCGCCGCCGCCGCCGCCGTACCAACCGCGGGCGGAGGCGCCGGCG GCCGCCAGCAGCAGGCGATGGGGAGAGTGTGGGCCATCTCGGAGCGGCCG GTGACCCTGGCCGACAACCCGGAGATCGGCCGCGTCCGCGCCCTCCTGGC GTTGTCCGGCGCTCCGTCCCCGTCCGATAATAACGGCACCACCGCCGCTA ACGGCGGCGGCGGCGGCGGCGGCGGCAGCAGGGCCGTAGTCCGTGGCGGG CGTAGTACCTCCCTTGCCGTCGTGGGGGGCGTGGTGTCGCGCGCAAAGGC GTGGCAGAGGAGCAGCCGCTACGCGTCGAGGCCGGTGGCGCCGTCGCCGC CCCTGGTTGCGTCGCCGGGGGGCTCCGCGGGATTCCCGGGGGGGTTGAAC GCGAGGGACGTCGGGGGGATGGTGCAGCTGCCGGAGCTTGGGGTCCAGCC GTACAGTAACCGGAGGGAGCTGCTTTGTTTGACCGGGGCGGGGCTGCAGG TGTTGACGCGGCTGAGGCCGGTGGACCTGCTGTATGATCTGCTGGCCCGG AACCACGTGGAAGGGGTGAGTCTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig800:125..7548-

>mRNA_Ecto-sp13_S_contig800.19315.1 ID=mRNA_Ecto-sp13_S_contig800.19315.1|Name=mRNA_Ecto-sp13_S_contig800.19315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig800:125..7548- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCGGTAGCCGAGGAGGACCATGACCCGTTTGGAGTGCTTCGCAA
CGCCAACACTGTGCTGCTGCACAACCTCCGCAGGGACGAGCTCTCTCCCG
AGCTCCAGAAGCAGCTGACGGCGACTGGGATGGCGTCCACGTCGCAAGCT
TACTTCTGCGATCCCTACACCAACTCGTACTTGGGACCTCAGATACGGTC
GAAGTCGTTCGCGATGCTGCCGGAGGCCCTGTCGCGAGAGCGAGACCGCG
TCGAGTGCATGACCTTCATGGGTTTGCTGCCGGAGATCGACCACGCGTGG
ATGACGGTGGACAACGTGCTCTACCTCTGGAACTACCATACCCAGGACTT
CACGCAGTTCAGGGAGCTCGAGCAGGTGATCGTGACGGTGGCGCTGGTCC
CCCCCAAGAAGGGCGTTTTCAACAAGGAGGTGGAGCACGTTCTCGCGGTC
GCGACCACGGTAGAGGTGATTCTGCTCGCGGTAACGTACCATGAGAAACC
GCAGGAGAACGGGAGTCCCAGGAACCGACGGATACAGGTGCGACGCACCA
ACTTCCGGGCCTCGACGGACGGCGTCTCTATGCTCAAGATCGCGGCACAC
CCGAACGGCAGGGTCTTCATGGCCGGAAAGGACGGCAACTTATACGAGCT
CACCTACAGCGTGGCCTACGGCTTCTGGTACTCGGTCTTCTCTGTGGGCA
GCCCGGTCCCCTCCCGACAGTGCAGCCGCCTCGCCCACAAGTCCTCCAGC
GGGGGGCCAAGCCCCGTGAACTCCATGTTTGCCCTGTTGGGCCTGCGGCG
CGCGGAGCGGGTGCTTGTGGATGTGGTGGTGGACCCCCTCAGGAACGTTC
TCTACACGCTCGACCTGGCGGGGGATGTAGACCTGTTCGACCTCGGAGCC
GATGGGAACAGCACCACCCAAAAGAACAATGTGTTCAATATCTGGACAAG
GGCGGCCAGATTTTGCCAAGGCTATGGGAATGGTCAAAGCGGATTGTCCC
ACTTGACCTTCAAGGACCCTAAGCAGCACCAGATTGTTTCTCTGGGAGTG
GTGCCTGCAACAGAGAGCAAGACGGTGGCACTTGTTGCGGTAACCGACTC
CGGGATGCGGATCTACTTGTCTTGCGGGTCCAGCGGTGGCAAGCGGCACA
ACTTCCGGCTCACCATAGTGCAGATACGGTGCCCCCCGCCGGAGAAGCTT
TGGCAGTACTTGCACCAGCACCAGGAGGCGGCGGGCGCGGCTCCGGTACC
TGCTGATGGCGGGGGAGGTACCCCGACGGCGCAGCAGCAGCAGCAGCAGC
AACAGCAGCAACAGCAGCAGATGTTCCAGCCCGCAGACGGTTTCCCGGCC
AAGTGGGAAAGGCAACCGCCTTCCGTGTACGGCGCGTACTGCTGCGGCGG
GGTGACGGTTCTAGCCCAGGCCTTGACGCAGGGGGATCGTCTCGTACTCA
TCGGATCGGACTTGATCACCCGCGCCAAGCGCAAGCGTGAGATGCACCAG
GAGGAACACCCGTCCATGAGAGAGGCGGTCGCCGAGATCGGCGACTCCGC
CGCCGCCGCCGCCGTACCAACCGCGGGCGGAGGCGCCGGCGGCCGCCAGC
AGCAGGCGATGGGGAGAGTGTGGGCCATCTCGGAGCGGCCGGTGACCCTG
GCCGACAACCCGGAGATCGGCCGCGTCCGCGCCCTCCTGGCGTTGTCCGG
CGCTCCGTCCCCGTCCGATAATAACGGCACCACCGCCGCTAACGGCGGCG
GCGGCGGCGGCGGCGGCAGCAGGGCCGTAGTCCGTGGCGGGCGTAGTACC
TCCCTTGCCGTCGTGGGGGGCGTGGTGTCGCGCGCAAAGGCGTGGCAGAG
GAGCAGCCGCTACGCGTCGAGGCCGGTGGCGCCGTCGCCGCCCCTGGTTG
CGTCGCCGGGGGGCTCCGCGGGATTCCCGGGGGGGTTGAACGCGAGGGAC
GTCGGGGGGATGGTGCAGCTGCCGGAGCTTGGGGTCCAGCCGTACAGTAA
CCGGAGGGAGCTGCTTTGTTTGACCGGGGCGGGGCTGCAGGTGTTGACGC
GGCTGAGGCCGGTGGACCTGCTGTATGATCTGCTGGCCCGGAACCACGTG
GAAGGGGTGAGTCTT
back to top