mRNA_Ecto-sp13_S_contig12301.1931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12301.1931.1
Unique NamemRNA_Ecto-sp13_S_contig12301.1931.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12301.1931.1 vs. uniprot
Match: D7G086_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G086_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 2.940e-52
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:   88 MHQPLYPGSSADARALREMLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQMSALLPGLAAGEQASS 387
            MH PLYPGSSADARALRE+LSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQMSALLPGLAAGEQASS
Sbjct:    1 MHPPLYPGSSADARALREVLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQMSALLPGLAAGEQASS 100
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BLAST of mRNA_Ecto-sp13_S_contig12301.1931.1 vs. uniprot
Match: A0A6H5JKL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKL7_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.070e-49
Identity = 99/112 (88.39%), Postives = 99/112 (88.39%), Query Frame = 1 
Query:   88 MHQPLYPGSSADARALREMLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQ------------MSALLPGLAAGEQASS 387
            MH PLYPGSSADARALREMLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQ            MSALLPGLAAGEQASS
Sbjct:    1 MHPPLYPGSSADARALREMLSRPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLARGLGVEFMAIKLQVLSSHAAFFVGKMSALLPGLAAGEQASS 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12301.1931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G086_ECTSI2.940e-5298.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKL7_9PHAE1.070e-4988.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12301contigEcto-sp13_S_contig12301:544..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size391
Hectar predicted targeting categoryother localisation
Exons3
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.1627092-CDS-Ecto-sp13_S_contig12301:543..7401681462655.1627092-CDS-Ecto-sp13_S_contig12301:543..740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12301 544..740 +
1681462655.1768553-CDS-Ecto-sp13_S_contig12301:1406..15481681462655.1768553-CDS-Ecto-sp13_S_contig12301:1406..1548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12301 1407..1548 +
1681462655.1857464-CDS-Ecto-sp13_S_contig12301:2736..27841681462655.1857464-CDS-Ecto-sp13_S_contig12301:2736..2784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12301 2737..2784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12301.1931.1prot_Ecto-sp13_S_contig12301.1931.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12301 544..2784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12301.1931.1

>prot_Ecto-sp13_S_contig12301.1931.1 ID=prot_Ecto-sp13_S_contig12301.1931.1|Name=mRNA_Ecto-sp13_S_contig12301.1931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
ERRRRSRTSGSGRSPGTGSSGGGRATVRHMHQPLYPGSSADARALREMLS
RPASGVTVLCVDPPASYTGDAFVRSALLGRAATVHVQAGEGYGSLASCLA
RGLGVEFMAIKLQMSALLPGLAAGEQASS
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mRNA from alignment at Ecto-sp13_S_contig12301:544..2786+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12301.1931.1 ID=mRNA_Ecto-sp13_S_contig12301.1931.1|Name=mRNA_Ecto-sp13_S_contig12301.1931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12301:544..2786+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGCCGCCGGCGGTCGCGAACCTCTGGTAGCGGGAGGAGCCCGGGAAC
AGGGAGCAGCGGCGGTGGCAGGGCTACCGTTCGGCATATGCACCAGCCGC
TGTATCCGGGGTCCTCAGCTGACGCAAGGGCGCTGAGGGAGATGCTGTCG
AGGCCGGCAAGTGGGGTCACCGTGCTCTGCGTCGACCCCCCCGCCAGGTA
CAGCAGTACGATGTTTTCTACCGATGTTGCTTTTGTTGCCGCATTAGTTT
CTTGAGGAAGAGGTAAGCTGCTCAAGCCAATGGTTGTCGCGTTTAGACGA
CCTGGAGCACGATGTTTCTCTGTCACATTGCTTTCTCGAGGAGAAAAAGG
CAGGCTGCATGAACCAATTGTAGTCGCGTTTAGACGACCCCACCGCCAGG
TACAGCAGCACGATGTTTTCTGCCGTGTTGCTTTCTTGCCTCCTTGCTTT
CTTGAGGAAAGTAAGACAGGCTGCGTGACACCATTGTTGTCCCGTTTTGA
CGTGCGCCATAGAGACATCCGACAAGATAGCAAGGATAGGGCAGGGGGGT
TCGTCCTCTTTTGGACTAGTTTCGCCATGCTTTCGGCATCGGAGTGGCGA
CGTTAAGAGCAGGGGGTTGAGGAATGAGTCCCTTGTTCCACGCCTTGGTC
ATTTCCTTCACTTCACAGGTGGCCACAGGCGGCCGGGAGGGGACCGGGGA
TCATGTCTACCATGGTCTACCAGATCATAATCTACCATGGTCTACCATGA
TCTACCACTGTTTTCACGTATCGCGCAATATTTAGTCATGCCCATCGTTA
CCAAACCCTTGTTCCATCTCTTCTCTTCACCTGTACCCACCCCATTTTTG
TCTCTATGTACAGCTACACCGGCGATGCCTTTGTCCGCAGCGCCCTCTTG
GGCCGCGCGGCGACGGTGCACGTCCAAGCGGGAGAGGGCTACGGATCCTT
GGCGTCGTGTTTGGCCCGGGGTCTGGGGGTGGAGTTCATGGCCATCAAGC
TCCAGGTGCGCTATAACTTTTTTTTTTCAGAGGTGTGGTTCTGCTGTGGT
GCTGAAAATCTTGGGAATTTGAAAGTTCTCAAGGTAATCCTGCTTTAGAG
GGTTCTAAGCGTAACCGTCTTCGGAAGGCTGTGCTGAAACGCTTTAACAA
CTATCCTCCGTTTTTTTTTTCTCTGAACGTCGGGCTCCTTTTAGCCAATA
CGGATTCGCGATAGAAACGGAAAACAGGGTTGAAAGGGTATATTATCGTG
AGGTGCGAAGTTGTACATTTGCACGTTGGAATTGCTGAAGAGTCATGTGT
CGGTTCAATACCGAGGGGAAGGAGCTACTACAAGGTTGGTCAAATCATGC
TTTGGATGCTTGGTAGTGATGGATTCGTATCGACTGTGGTTCTATCGGTG
CGGAACTTAGCTTGTGAAGGCGGGTTGGATCACAGTTCGGAATACCGCCA
CACCGTAGCTGTGGGTTTCACCCTACCGGTGAGGCGATCGGGAGAGCAGT
TTCTGATGCGAAGAGAAGGCTAGCCACTGTGATCGGTGGCGCCAACTGTA
GCGTTCTTTGTAGTAAGGATTGGGTTTGCGTTTGCGTTCCGGCGTACAAA
CGGCGACATTATTAACAAAGTTTCCAGCCCCCAGCAGTAGTAATGGCAAC
GGCAACGTGTGTTGGCTTCATGGCCCGGGCGACTTAACGGCGAATTTTTC
AAACCAAAAGTTGTAGCCGCAACGGCACAATAACAGTAACGGTAACGTGT
GTTGGCTTTGTGTCCCAGACGAATCGACCTTGACTTTTATTCAAACCGAA
GGGTCAGCCATAGCAGCAGAACCAGGAACGACAAATGTGGTGGCTTTGTG
CCCCAGACGTTTTTTTCAACCTTGAGCTGCCAGCCGCAGTAGCAGCTTAA
GTAGCAACAGTAGAACAAACTGCACGCGTTTAACGTATGGGCTGCTAGTG
CTTTCGACGCGCGTTCGTTTCGGATTTGATTTCATCGTCCTCCCTGCATT
TACTACCGCCAATCTCGTCGCCCATATTCCCACCACGTTTTGGCAGGTCC
TCTCTAGGCGTGCGGCGTTTTTTGTGGAAGGTAATCTGGGTCAAAAATCT
CGCTCTCCCCCACGCCATTCTTTTCCTCCTCCATCATCGATTTCATCCTC
CCTTCTCCCTGTGTATACGCGTGTTTCCTCGTGTAATTTGCAGATGTCGG
CACTATTGCCGGGCCTGGCCGCCGGCGAACAGGCCTCCTCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12301:544..2786+

>mRNA_Ecto-sp13_S_contig12301.1931.1 ID=mRNA_Ecto-sp13_S_contig12301.1931.1|Name=mRNA_Ecto-sp13_S_contig12301.1931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12301:544..2786+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGCCGCCGGCGGTCGCGAACCTCTGGTAGCGGGAGGAGCCCGGGAAC
AGGGAGCAGCGGCGGTGGCAGGGCTACCGTTCGGCATATGCACCAGCCGC
TGTATCCGGGGTCCTCAGCTGACGCAAGGGCGCTGAGGGAGATGCTGTCG
AGGCCGGCAAGTGGGGTCACCGTGCTCTGCGTCGACCCCCCCGCCAGCTA
CACCGGCGATGCCTTTGTCCGCAGCGCCCTCTTGGGCCGCGCGGCGACGG
TGCACGTCCAAGCGGGAGAGGGCTACGGATCCTTGGCGTCGTGTTTGGCC
CGGGGTCTGGGGGTGGAGTTCATGGCCATCAAGCTCCAGATGTCGGCACT
ATTGCCGGGCCTGGCCGCCGGCGAACAGGCCTCCTCG
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