mRNA_Ecto-sp13_S_contig8.19309.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE) HSP 1 Score: 778 bits (2008), Expect = 4.030e-265 Identity = 403/424 (95.05%), Postives = 415/424 (97.88%), Query Frame = 3
Query: 987 MTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLYIEEDLTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVLRSSAANTQRPRRGSSSSQQRKVTPSEEAAQHMWTYDKIAVDNSMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEPSDEELSGVFDRAYSQIRYMIESNIVHKFLETDEFRKAANSLPPSRRERRLFLLPC 2258
MTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPA+YFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYK T+PNEDYR+HQAGVKWLCTLVLQI QICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKL+IEE+LTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPM RAVLRSSA+ TQ+PRRG QQRK+TPSEEAAQHMWTYDKIA+DN+MAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEPSDEELSG+FDRAYS IRYMIESNIVHKFLETDEFRKAANS+PPSRRERRLFLLPC
Sbjct: 1 MTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPANYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKITVPNEDYRDHQAGVKWLCTLVLQITQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLFIEEELTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMTRAVLRSSASKTQKPRRGXXXXQQRKITPSEEAAQHMWTYDKIALDNAMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEPSDEELSGIFDRAYSHIRYMIESNIVHKFLETDEFRKAANSVPPSRRERRLFLLPC 424
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D7FTW0_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW0_ECTSI) HSP 1 Score: 188 bits (478), Expect = 3.100e-47 Identity = 146/439 (33.26%), Postives = 233/439 (53.08%), Query Frame = 3
Query: 960 FKLVFGIVYMTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIV-LGLIQSVFVKLYIEEDLTG------EIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVL------------RSSAANTQRPRRGSSSSQQR-KVTPSEEAAQHMWTYDKIAVDNSMAEAFRVFANRALCQESVWFLEEVSRYQNEDY--TIASPLGGG---KIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEP-SDEELSGVFDRAYSQIRYMIESNIVHKFLETDEFR 2198
F+L G ++ G L F+R + + +IR RS YLV G+ +L +TV+ V++ T +F +L +FF++ ++ YI R +RLAV FHP+++R++P L+ E+ + V L V L+IPIY++ TL D Q + + VL +A C+ P + +DDLF IS EL+++ +GLI V +++ G E R N N+ +L + VLFG+S++ P+RRL P A + A VL R A + RG + + + S + +W +++I +A AF ++ RALC ES FL EVSRYQN DY TI + G + F I F++ G+P+EVN+S ++K I+A+ +K FE +D E +F RAY ++ M+E+N++ +FL TD F+
Sbjct: 55 FRLGVGCCFIVLGTCALARFYRLKQILDIRTRSAYLVMVGGVAGILTMLVTVNDATTVIWDTGFDWFWTSLFLFFISPALFGRYICRALRLAVVFHPRVKRALPWLIPERNYMVVLLVASVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFIRNVDDLFSISTELIIVTATIGLITIV-------QEIDGLWGGCYERRWLAN--NLSVLFMIVLFGVSIVAPLRRLASDPFAATRRNYANRVLPDHTEPHSIGGNRLDAVRRGQSERGDDRGRDGGRRSRSHKQDIDLWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTIRASSGSSFPTQFGTFCYITDTFIKAGSPEEVNISDKERKLILALYHKGEELFEDVNDAERRMIFRRAYLAVKRMLEANLLLRFLNTDRFK 484
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D7FTW2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW2_ECTSI) HSP 1 Score: 144 bits (362), Expect = 2.550e-33 Identity = 119/374 (31.82%), Postives = 188/374 (50.27%), Query Frame = 3
Query: 1107 ITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIV-LGLIQSVFVKLYIEEDLTGEIRNFIN---PPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVLRSSAANTQRPRRGSSSSQQRKVTPSEEAAQHMWTYDKIAVDNSMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGG-----KIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGFEPSD-EELSGVFDRAYSQIRYMIESNIVHKFLETDEFR 2198
+TV+ V++ T +F +LL+FF++ ++ YI R +RLAV FHP+++R++P L+ E+ + V L V L+IPIY++ TL D Q + + VL +A C+ P + +DDLF IS EL+++ +GLI T RN+ N P + + +I G + +D VRR Q+ R R G S+ K +W +++I +A AF ++ RALC ES FL EVSRYQN DY G + F I F++ G+ +EVN+S ++K I+A+ +K FE + EE +F RAY ++ M+E+N++ +FL TD F+
Sbjct: 13 VTVNDATTVIWDTGFDWFWTSLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLVPERNYMVVLLVSSVGMLAIPIYHEHTLGVWDAISKQTTILKIEARVLAVALACIYPFIRNVDDLFSISTELIIVTATIGLI-------------TTTRRNYANRVLPDHTEPHSI----GGNRLDAVRR------GQTER------------GDDRGRDGGRRSRSHKQDID------LWDFERIVRTPLLAVAFEDYSKRALCHESFLFLSEVSRYQNGDYATTKRASSGSSFPTQFGTFCYITDTFIKAGSHEEVNISDKERKLILALYHKGEELFEDVNVEERRMIFRRAYLAVKRMLEANLLLRFLNTDRFK 345
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D8LEK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK8_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.060e-31 Identity = 116/362 (32.04%), Postives = 192/362 (53.04%), Query Frame = 3
Query: 948 GFSWFKLVF--GIVYMTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYRE----HQAGVK-WLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLYIEEDLTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVLRSSAANTQRPRRGSSSSQQRKVTPSEEA------AQHMWTYDKIAVDNSMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKR 1994
G +WF LV G++ + GV L++ + R VFEIRARS LV LG + + + ++V+F + +T +L FF+ + CY SR IRLAV F RR +P L SE+ + + L +G SL P+Y + + + + E +AGV W ++ Q + L P+VW DD+F+ISREL V+IVL + + + + + ++ ++N M ++ +V+F LS+ P+R+L F P+ S ++RA+ A ++ R G S+ T S + +WTY+K+ S++ AF F+ +ALCQES++FL++V+ N+D I G++ AF + R
Sbjct: 58 GIAWFLLVVSSGLLVVMTGVMFLLI--KNRHVFEIRARSACLVMLLGASTMTALAMNMVGQSVVIFNALPNLYTFFMLYFFILVCGSCCYGSRTIRLAVLFSTGTRRVVPWLASERNHVCMCLVLGAGSLGFPLYVMYDVGDGPFAELLFAERAGVLLWRVSIASQAMVLSLYPLVWKTDDIFNISRELRVVIVLTF-STTLIGHFGDNHSSEDVARWVNTRIMGFISATVIFFLSLGLPIRQLVFDPLESSDPRVSRAL-----AKRRQGRLGPESTTTPCCTSSAGSEFSGVNTLALWTYEKVEAMPSVSVAFHEFSRKALCQESIFFLKDVTNSGNKD-AIVGVYEAGQL-AFYGLPSR 409
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D7G1D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D5_ECTSI) HSP 1 Score: 122 bits (305), Expect = 1.260e-27 Identity = 76/172 (44.19%), Postives = 101/172 (58.72%), Query Frame = 3
Query: 960 FKLVFGIVYMTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAI--VLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREH----QAGVKWLCTLVLQIAQICLLPVVW 1457
F L+FG + G L F+ R+V EIRARS YLV TLGL LL +T+D+H + L G P++ F + FF+ FSI SCYI RVIRL V F P+++R +P +M EKL + SLSIG +S +IP YY D + + W+C + L Q+CLLPVVW
Sbjct: 28 FHLIFGSAMLVLGTMVLFKMFQYRNVLEIRARSAYLVMTLGLCLL--AALTLDVHVMCRTLLGWPSNVFLVHSGYFFIIFSIESCYIWRVIRLGVSFSPRVKRFIPWVMWEKLAVVSSLSIGAVSTAIPTYYYIEYGGGDDHDRFLAAELDAMWVCHVALISIQLCLLPVVW 197
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D7G1D4_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D4_ECTSI) HSP 1 Score: 118 bits (296), Expect = 3.520e-26 Identity = 61/132 (46.21%), Postives = 90/132 (68.18%), Query Frame = 3
Query: 1806 WTYDKIAVDNSMAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGF-EPSDEELSGVFDRAYSQIRYMIESNIVHKFLETDEFR 2198
W+YD + +AEAFR FA+RALCQES+ FLE V++Y++ DY+IA P+ + AF AI KRFV DGA DE+N+ TDK+ I+ + + F E +D V ++AY +IR M+E+N++++FL T+ FR
Sbjct: 68 WSYDTMTTVPEVAEAFRGFAHRALCQESIMFLEAVTQYESGDYSIAKPIAS-QFAAFNAIVKRFVADGALDEINIGGTDKERILKIFQCGSTAFFEMNDAGRRLVLNKAYIEIRDMLETNLLYRFLHTEAFR 198
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: A0A6H5KIU5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIU5_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.300e-26 Identity = 60/130 (46.15%), Postives = 88/130 (67.69%), Query Frame = 3
Query: 1839 MAEAFRVFANRALCQESVWFLEEVSRYQNEDYTIASPLGGGKIEAFEAIAKRFVEDGAPDEVNLSYTDKKNIIAMLNKEARGF-EPSDEELSGVFDRAYSQIRYMIESNIVHKFLETDEFRKAANSLPPS 2225
+AEAFR FA+RALCQES+ FLEEV++Y++ DY+IA P+ + AF AI KRFV DGA DE+N+ TDK+ I+ + + F E ++ V ++AY +IR M+E+N++H+FL T+ FR P+
Sbjct: 7 VAEAFRGFAHRALCQESIMFLEEVTKYESGDYSIAKPIAS-QFAAFNAIVKRFVVDGALDEINIGGTDKERILKIFQSGSTAFFEMNEAGRRLVLNKAYIEIRDMLETNLLHRFLHTEAFRTLLAGADPN 135
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: A0A6H5JE98_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE98_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.400e-23 Identity = 86/255 (33.73%), Postives = 141/255 (55.29%), Query Frame = 3
Query: 963 KLVFGIVYMTFGVYCLVLFFRARDVFEIRARSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLYIEEDLTG------EIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVL 1709
+L G ++ G LV F+R++ + +IR RS YLV G+ +L +TV+ V++ +F +LL+FF++ ++ YI R +RLAV FHP+++R++P L+ E + V L V L+IPIY+++TL D Q + + VL +A C+ P + +DDLF IS EL+++ + + L E++ G E R F N NM ++ + +LFG+S+I P+RRL P+A + A VL
Sbjct: 56 RLGVGCCFIVLGTCALVRFYRSKWILDIRTRSAYLVMVGGVAGILTMLVTVNDSTTVVWDIGFDWFWISLLLFFISPALFGSYICRALRLAVVFHPRVKRALPWLIPEHNYMVVLLVASVGMLAIPIYHEYTLGVWDAISKQTNILKIEARVLAVALACIYPFIRNVDDLFSISTELIIV-------TATIVLITSEEVDGQWWGPYERRWFAN--NMSVVFMIILFGVSIIAPLRRLASDPLAATRHNYANRVL 301
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D8LJQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ7_ECTSI) HSP 1 Score: 102 bits (254), Expect = 1.350e-20 Identity = 65/185 (35.14%), Postives = 106/185 (57.30%), Query Frame = 3
Query: 1155 YFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLYIEEDLTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVL 1709
+F +LL+FFV+ ++ YI R +RLAV FHPK +R++P L+ E+ +AV + L+IP+Y+++TL + Q + ++ + Q C+ P + +DDLF IS+EL ++ ++ +V KL E D G N+ LL +V+F +SV+DP+RRL F P+A + A VL
Sbjct: 19 WFWVSLLLFFVSPALFGSYICRALRLAVVFHPKAKRALPWLIPERNYVAVLMVASCGMLAIPLYHEYTLEVWEIIPKQTDILIWVSIAFAVVQACIYPFIRNVDDLFSISKELAIVTAAVILLAVGQKL--EGDYGGVYERRWLGNNLFLLFAAVVFSVSVVDPLRRLAFDPLAATKRNYADRVL 201
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.230e-19 Identity = 81/244 (33.20%), Postives = 131/244 (53.69%), Query Frame = 3
Query: 1053 RSVYLVTTLGLLLLLYEGITVDLHAIVLFGTPAHYFTNNLLVFFVTFSIASCYISRVIRLAVGFHPKLRRSMPKLMSEKLLIAVSLSIGVMSLSIPIYYKFTLPNEDYREHQAGVKWLCTLVLQIAQICLLPVVWYIDDLFHISRELMVIIVLGLIQSVFVKLYIEEDLTGEIRNFINPPNMQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMARAVLRSSAANTQRPRRGSSSSQQRKVTPS 1784
RS +LV G+ +LL + V+ V++ + +F +LL+FF++ ++ YI R +RLAV FHP+ +R++P L+ E+ + V L + V ++IPIY ++TL + Q + LV + C+ P + +DDLF+IS+EL+++ V + +V K E E R N N+ + +VLFG+S++DP+RRL P+A + A VL S A R S S R PS
Sbjct: 3 RSAHLVMVEGVCVLLTMVVAVNGSINVVWDSGLDWFWMSLLLFFISPALKGSYICRALRLAVVFHPRAKRALPWLIPERNYMVVLLVVSVGMMAIPIYQEYTLEVWEIIPKQTTILTTEALVFAVTLACIYPFIRNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYEQRWVGN--NISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPS 244 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8.19309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8.19309.1 >prot_Ecto-sp13_S_contig8.19309.1 ID=prot_Ecto-sp13_S_contig8.19309.1|Name=mRNA_Ecto-sp13_S_contig8.19309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=494bp MDLIARTPHPFVGFSSLLFYAASVGSRASPSHMYILLYMYLPPSPLICLTback to top mRNA from alignment at Ecto-sp13_S_contig8:56241..66409+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8.19309.1 ID=mRNA_Ecto-sp13_S_contig8.19309.1|Name=mRNA_Ecto-sp13_S_contig8.19309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:56241..66409+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8:56241..66409+ >mRNA_Ecto-sp13_S_contig8.19309.1 ID=mRNA_Ecto-sp13_S_contig8.19309.1|Name=mRNA_Ecto-sp13_S_contig8.19309.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:56241..66409+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |