mRNA_Ecto-sp13_S_contig8.19310.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8.19310.1
Unique NamemRNA_Ecto-sp13_S_contig8.19310.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8.19310.1 vs. uniprot
Match: A0A6H5KGT8_9PHAE (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGT8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.710e-7
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  339 LSLYTFVACFGRSVIDPVRRLKFSPMAQSSAPMARAVL 452
            + L T    FG SVIDPVRRLKFSPMAQSSAPM RAVL
Sbjct:  204 MQLLTISVLFGLSVIDPVRRLKFSPMAQSSAPMTRAVL 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8.19310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGT8_9PHAE8.710e-776.32RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8contigEcto-sp13_S_contig8:60441..60893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categorysignal peptide
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464071.1864886-UTR-Ecto-sp13_S_contig8:60440..604821681464071.1864886-UTR-Ecto-sp13_S_contig8:60440..60482Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8 60441..60482 +
1681464071.2052763-UTR-Ecto-sp13_S_contig8:60824..608931681464071.2052763-UTR-Ecto-sp13_S_contig8:60824..60893Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8 60825..60893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464071.1961737-CDS-Ecto-sp13_S_contig8:60482..608241681464071.1961737-CDS-Ecto-sp13_S_contig8:60482..60824Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8 60483..60824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8.19310.1prot_Ecto-sp13_S_contig8.19310.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8 60483..60824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8.19310.1

>prot_Ecto-sp13_S_contig8.19310.1 ID=prot_Ecto-sp13_S_contig8.19310.1|Name=mRNA_Ecto-sp13_S_contig8.19310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
MQLLTISVLFGLRCVRAYAYACGLTQTTHEKVVEQHQRDDRSAHQLALPL
ESRSPLNGESKDTDRAVESRLLNLVYSLTIEYPSPSFFNSANPRRSFCFC
RSTRSLHALVAAS*
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mRNA from alignment at Ecto-sp13_S_contig8:60441..60893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8.19310.1 ID=mRNA_Ecto-sp13_S_contig8.19310.1|Name=mRNA_Ecto-sp13_S_contig8.19310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:60441..60893+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTGACGGGAGAAATCAGGAACTTCATCAACCCGCCCAACATGCAGCT
CTTAACAATCTCAGTGTTGTTCGGACTCAGGTGTGTACGTGCGTATGCGT
ATGCCTGCGGTTTAACGCAGACGACGCACGAGAAGGTCGTTGAACAGCAC
CAGCGTGACGATCGATCTGCTCACCAACTCGCCCTCCCCCTCGAATCACG
TTCGCCGCTGAACGGGGAGAGTAAGGACACGGACAGGGCCGTGGAAAGCC
GCTTGCTGAACCTTGTCTACTCGCTCACGATAGAATACCCGTCGCCTTCT
TTTTTTAATTCTGCGAATCCAAGAAGGTCGTTCTGTTTTTGTCGCTCTAC
ACGTTCGTTGCATGCTTTGGTCGCAGCGTCATAGATCCAGTCCGCCGTCT
CAAGTTCAGCCCCATGGCCCAGAGCTCGGCTCCCATGGCTCGCGCTGTTC
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8:60441..60893+

>mRNA_Ecto-sp13_S_contig8.19310.1 ID=mRNA_Ecto-sp13_S_contig8.19310.1|Name=mRNA_Ecto-sp13_S_contig8.19310.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:60441..60893+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTCTTAACAATCTCAGTGTTGTTCGGACTCAGGTGTGTACGTGC
GTATGCGTATGCCTGCGGTTTAACGCAGACGACGCACGAGAAGGTCGTTG
AACAGCACCAGCGTGACGATCGATCTGCTCACCAACTCGCCCTCCCCCTC
GAATCACGTTCGCCGCTGAACGGGGAGAGTAAGGACACGGACAGGGCCGT
GGAAAGCCGCTTGCTGAACCTTGTCTACTCGCTCACGATAGAATACCCGT
CGCCTTCTTTTTTTAATTCTGCGAATCCAAGAAGGTCGTTCTGTTTTTGT
CGCTCTACACGTTCGTTGCATGCTTTGGTCGCAGCGTCATAG
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