mRNA_Ecto-sp13_S_contig7998.19302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7998.19302.1
Unique NamemRNA_Ecto-sp13_S_contig7998.19302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 3.240e-68
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:    1 MRMPPVSAFHTTAVWAARYSRLLGIPSCLLKPPRRGDISLFKTSAQRDKHMASIRDGRGGHNRDVAAMPKVDGRVACTATLEVSVSSPEEMEETGAFFGADASGGDVVLLWGIINRG 351
            MRMPPVSAFHTTAVWAARYSRLLGIPSCLLKPPRRGDISLFKT+AQRDKHMASI+DGRGGH R + AMPKVDG VACTATLEVSV+SPEEMEETGAFFGADASGGDVVLLWG +  G
Sbjct:    1 MRMPPVSAFHTTAVWAARYSRLLGIPSCLLKPPRRGDISLFKTTAQRDKHMASIQDGRGGHTRGMTAMPKVDGGVACTATLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTG 117
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: A0A640VT27_9RHOB (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Roseobacter cerasinus TaxID=2602289 RepID=A0A640VT27_9RHOB)

HSP 1 Score: 70.1 bits (170), Expect = 1.810e-11
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 3 
Query:  372 VCVVTQRSRSCVFSAVFFVDRPIFPNRLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTA-VNEEERILKFIGHGAW 656
            + VV +   S  F+ V   D    P  L H DLYRL   T++  LG+   FET +CLVEWPDRLG  +P + L +HL A  +++ R+L+      W
Sbjct:   54 ILVVPEDVPSPTFTIVQTYDTRQGP--LWHADLYRLTDDTEVEELGLAEAFETAICLVEWPDRLGPLRPQDALSIHLDAGQHDQARVLRLTSTAVW 147
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: UPI001ADED63F (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Pararhodobacter sp. SW119 TaxID=2780075 RepID=UPI001ADED63F)

HSP 1 Score: 69.3 bits (168), Expect = 3.150e-11
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 3 
Query:  381 VTQRSRSCVFSAVFFVDRPIFPNRLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVVE 674
            V +   S  F+ V   D P FP  + H DLYRL    +   LG+   FET +CLVEWP+RLG  +P N L + L+    + R ++ I  GA W+  +E
Sbjct:   53 VAEEVPSPTFTLVQVYDGPGFP--IWHADLYRLTDPEEAVELGLAEAFETALCLVEWPERLGPCRPPNALTLRLSHAPGDSREVELIADGAGWSERLE 148
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: A0A3M8ERS9_DESBX (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Desulfuromonadales bacterium TaxID=2099678 RepID=A0A3M8ERS9_DESBX)

HSP 1 Score: 68.9 bits (167), Expect = 3.930e-11
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:  450 RLHHMDLYRLQGGTDLRVLGIPGVFE-TCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHG 650
            RLHH DLYRL+GG D   LG    F  + VCLVEW +RLG   P+ RLD+  +   E+ R L F+ HG
Sbjct:   62 RLHHFDLYRLEGGDDAAHLGFDEYFYGSGVCLVEWAERLGEEMPLERLDIMFSYEGEDTRRLDFVPHG 129
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: A0A8J7WA26_9RHOB (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Aestuariicoccus sp. KMU-90 TaxID=2827239 RepID=A0A8J7WA26_9RHOB)

HSP 1 Score: 67.8 bits (164), Expect = 1.260e-10
Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = 3 
Query:  459 HMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWTGVV 671
            H DLYRL    ++  LG+   FET +CLVEWPDRLG   P + L +H T + EE R L     G  W  +V
Sbjct:   79 HADLYRLGSADEIIELGLAEAFETAICLVEWPDRLGNLAPPDALHLHFTPLEEETRRLDLSWTGTRWDSLV 149
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: UPI000D37DEF8 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Oceaniglobus ichthyenteri TaxID=2136177 RepID=UPI000D37DEF8)

HSP 1 Score: 67.8 bits (164), Expect = 1.510e-10
Identity = 38/103 (36.89%), Postives = 52/103 (50.49%), Query Frame = 3 
Query:  354 LVMALRVCVVTQRSRSCVFSAVFFVDRPIFPNRLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAWWT 662
            L+ AL+     +   S  F+ V   D P+    + H DLYRL   +D+  LG+   FET +CL+EWPDRLG   P   L + L    E  R + F+G   W T
Sbjct:   51 LIQALQGPEFAEDVPSPTFTLVQTYDTPM--GEVWHADLYRLGDVSDVFELGMDEAFETALCLIEWPDRLGPAAPDTALTLRLATRGETGRSIAFVGDHCWQT 151
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: A0A239KYM8_9RHOB (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Tropicimonas sediminicola TaxID=1031541 RepID=A0A239KYM8_9RHOB)

HSP 1 Score: 67.4 bits (163), Expect = 2.460e-10
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 3 
Query:  459 HMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEE-RILKFIGHGAWWTGVVEDFQEA 689
            H DLYRL G  D+  LG+   FET +CLVEWPDRLG   P   L++ L+A    + RI K    G  WT +     +A
Sbjct:   90 HADLYRLGGPDDVFELGLDAAFETAICLVEWPDRLGEATPPGALEIALSADPASDGRIAKLTATGPRWTALARRLADA 167
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BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: UPI001EF85CD4 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Vitreimonas flagellata TaxID=2560861 RepID=UPI001EF85CD4)

HSP 1 Score: 66.6 bits (161), Expect = 3.510e-10
Identity = 33/68 (48.53%), Postives = 41/68 (60.29%), Query Frame = 3 
Query:  453 LHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAW 656
            L H+DLYRL+   D   LG+   F    CL+EWP+RLGA  P +RLD+ LT   +E R  K   HGAW
Sbjct:   83 LWHVDLYRLKQPDDAWELGLEDAFAYAACLIEWPERLGAQLPRDRLDIALTPA-DEGRTAKLNAHGAW 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: UPI001EEDF225 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Maricaulis parjimensis TaxID=144023 RepID=UPI001EEDF225)

HSP 1 Score: 66.2 bits (160), Expect = 4.480e-10
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:  453 LHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEE--RILKFIGHGAWWTGV 668
            L H DLYR++  ++L  LG+   F+T +CLVEWPDRLG   P +RL++ L  +   +  R  +  G+G W T +
Sbjct:   76 LWHADLYRIEDPSELEELGLDEAFDTAICLVEWPDRLGEHLPPDRLEIRLETLEGSQTGREARLTGYGRWETRI 149
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Match: A0A7X0EG01_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Nitrospirillum iridis TaxID=765888 RepID=A0A7X0EG01_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 5.080e-10
Identity = 39/86 (45.35%), Postives = 44/86 (51.16%), Query Frame = 3 
Query:  399 SCVFSAVFFVDRPIFPNRLHHMDLYRLQGGTDLRVLGIPGVFETCVCLVEWPDRLGATQPVNRLDVHLTAVNEEERILKFIGHGAW 656
            S  F+ V   D P FP  L H DLYRL    ++  LG   V    V LVEWP RLGA  P +RLD+ L     E R     GHGAW
Sbjct:   62 SPTFTLVQTYDLPGFP--LWHFDLYRLTAPDEVLELGWEEVRHEGVALVEWPARLGALLPADRLDLDLAITGPESRRATLTGHGAW 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7998.19302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR96_ECTSI3.240e-6889.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A640VT27_9RHOB1.810e-1139.58tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI001ADED63F3.150e-1138.78tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A3M8ERS9_DESBX3.930e-1150.00tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A8J7WA26_9RHOB1.260e-1045.07tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI000D37DEF81.510e-1036.89tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A239KYM8_9RHOB2.460e-1043.59tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI001EF85CD43.510e-1048.53tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
UPI001EEDF2254.480e-1040.54tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A7X0EG01_9PROT5.080e-1045.35tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7998contigEcto-sp13_S_contig7998:900..2913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score218.8
Seed ortholog evalue1.4e-54
Seed eggNOG ortholog2880.D7FR96
Model size710
KEGG koko:K06925
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Threonylcarbamoyl adenosine biosynthesis protein TsaE
EggNOG OGs2S3MQ@2759,COG0802@1
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_002340.1
Cds size360
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.9202847-CDS-Ecto-sp13_S_contig7998:899..12341681464070.9202847-CDS-Ecto-sp13_S_contig7998:899..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7998 900..1234 +
1681464070.940736-CDS-Ecto-sp13_S_contig7998:1998..20231681464070.940736-CDS-Ecto-sp13_S_contig7998:1998..2023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7998 1999..2023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.9529712-UTR-Ecto-sp13_S_contig7998:2023..22541681464070.9529712-UTR-Ecto-sp13_S_contig7998:2023..2254Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7998 2024..2254 +
1681464070.9636037-UTR-Ecto-sp13_S_contig7998:2794..29131681464070.9636037-UTR-Ecto-sp13_S_contig7998:2794..2913Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7998 2795..2913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7998.19302.1prot_Ecto-sp13_S_contig7998.19302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7998 900..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7998.19302.1

>prot_Ecto-sp13_S_contig7998.19302.1 ID=prot_Ecto-sp13_S_contig7998.19302.1|Name=mRNA_Ecto-sp13_S_contig7998.19302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=120bp
MRMPPVSAFHTTAVWAARYSRLLGIPSCLLKPPRRGDISLFKTSAQRDKH
MASIRDGRGGHNRDVAAMPKVDGRVACTATLEVSVSSPEEMEETGAFFGA
DASGGDVVLLWGIINRGSW*
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mRNA from alignment at Ecto-sp13_S_contig7998:900..2913+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7998.19302.1 ID=mRNA_Ecto-sp13_S_contig7998.19302.1|Name=mRNA_Ecto-sp13_S_contig7998.19302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2014bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7998:900..2913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAATGCCTCCAGTCTCAGCGTTTCACACCACCGCCGTATGGGCTGC
TAGATATAGTCGACTTCTCGGGATTCCGTCATGTCTACTCAAACCGCCCA
GGAGAGGAGACATATCTTTGTTTAAAACTTCCGCCCAACGGGACAAGCAC
ATGGCCTCTATTCGAGATGGACGAGGAGGTCATAATCGTGACGTGGCAGC
AATGCCGAAGGTGGATGGGAGGGTTGCTTGCACAGCGACTTTGGAGGTTT
CTGTGTCATCACCGGAAGAAATGGAAGAAACAGGCGCTTTCTTCGGCGCG
GACGCCAGTGGTGGAGACGTGGTTCTCTTGTGGGGGTAAGGTACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCAATGACATTGTTTCGGTCTCGCCAGACCAAGCGTTAGAATGACACTTT
GTACCGAGTACTGACTAGAAGGTACGCCTCGTATCACGCATTTTGAGAGC
ATCATAAACCGTGGCTCCTGGTGATGGCACTTCGCGTATGCGTCGTGACA
CAACGATCCCGCTCTTGTGTTTTTTCGGCTGTGTTTTTCGTTGACCGTCC
CATTTTCCCCAACAGACTGCACCACATGGATCTATATCGGCTTCAAGGGG
GTACCGATCTTCGAGTGCTCGGTATTCCGGGCGTGTTTGAGACATGTGTT
TGTCTTGTTGAGTGGCCTGATCGGCTGGGAGCGACTCAACCAGTCAACAG
ACTAGGTGAAAGAAATACTCGGTGTTCGGCATAATGTAATTTCGGTTTGT
CTTCCATTTCTGCCCACGTTGCATACTACGATCCGAATATCTGCGCGTGT
CAAAACGCGAGGGAGTGAATACTTCCAGCCGACAAACGATTGGAGATCGG
TTTGTGATGAAATTTCTTTGCTGCCCGCCCAGCCCCTTGCTGAGCGGTGT
GTAAGGTAGGCTGTTCTTTCTAGTCGCCAAAGAATACCAAAGCTGTAGCC
TATCAAGCCTCGAAGGCCAAGATGCTCTCTGCTCAACGAATTGCAGGCTG
CAGGCGTTGCATTAGGTTAAACCCGGTAGATACCTGCGCCTGCTACTTTG
ATGCATGAACTTCCCCGCCCGGCGTCCAACTCATGGGACAAAGATAAAGT
TGACCTCCCGAACACGGTGTAGCGATCGCCAACGGGGTAGCGGGGCCGAA
AACGTACGGGCGTTTGTGATGAAACTGTCTTATGGTCAAACACCTCACGG
CATGGTATTGTTGCTGACATGCGCACCGCTCATGTACTTGCGCAGATGTT
CACCTGACAGCAGTCAACGAAGAAGAACGAATACTTAAATTCATTGGACA
TGGCGCCTGGTGGACAGGGGTGGTGGAAGATTTCCAGGAAGCAAGGCGAA
CAACGAACCTTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7998:900..2913+

>mRNA_Ecto-sp13_S_contig7998.19302.1 ID=mRNA_Ecto-sp13_S_contig7998.19302.1|Name=mRNA_Ecto-sp13_S_contig7998.19302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7998:900..2913+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAATGCCTCCAGTCTCAGCGTTTCACACCACCGCCGTATGGGCTGC
TAGATATAGTCGACTTCTCGGGATTCCGTCATGTCTACTCAAACCGCCCA
GGAGAGGAGACATATCTTTGTTTAAAACTTCCGCCCAACGGGACAAGCAC
ATGGCCTCTATTCGAGATGGACGAGGAGGTCATAATCGTGACGTGGCAGC
AATGCCGAAGGTGGATGGGAGGGTTGCTTGCACAGCGACTTTGGAGGTTT
CTGTGTCATCACCGGAAGAAATGGAAGAAACAGGCGCTTTCTTCGGCGCG
GACGCCAGTGGTGGAGACGTGGTTCTCTTGTGGGGCATCATAAACCGTGG
CTCCTGGTGA
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