mRNA_Ecto-sp13_S_contig79896.19291.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79896.19291.1
Unique NamemRNA_Ecto-sp13_S_contig79896.19291.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A0A0G4FBF8_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FBF8_9ALVE)

HSP 1 Score: 73.2 bits (178), Expect = 1.290e-15
Identity = 30/34 (88.24%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGH+VLTTT+GIMDHEEARRKHTGGKILGFF+
Sbjct:   97 RQFGHLVLTTTYGIMDHEEARRKHTGGKILGFFF 130
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A0A7S3PA85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PA85_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.290e-15
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGHIVLTT +GIMDHEEARRKHTGGK+LGFFY
Sbjct:   97 RQFGHIVLTTAYGIMDHEEARRKHTGGKVLGFFY 130
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: D7G3J4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J4_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.240e-15
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    7 FGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            FGHIVLTTTFGIMDHEEARRKHTGGKILGFFY
Sbjct:  156 FGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 187
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A0A5A8DQB0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQB0_CAFRO)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-15
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGHIVLTT+ GIMDHEEARRKHTGGKILGFFY
Sbjct:   78 RQFGHIVLTTSAGIMDHEEARRKHTGGKILGFFY 111
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A7APZ9_BABBO (Ribosomal protein S8 family protein n=6 Tax=Eukaryota TaxID=2759 RepID=A7APZ9_BABBO)

HSP 1 Score: 72.0 bits (175), Expect = 3.680e-15
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGHIVLTT +GIMDHEEARRKHTGGKILGFF+
Sbjct:   97 RQFGHIVLTTAYGIMDHEEARRKHTGGKILGFFF 130
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A0A812JFE9_9DINO (RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812JFE9_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 3.680e-15
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGHIVLTT+ GIMDHEEARRKHTGGKILGFFY
Sbjct:   97 RQFGHIVLTTSAGIMDHEEARRKHTGGKILGFFY 130
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: I7IFK2_BABMR (Small subunit ribosomal protein S15Ae n=1 Tax=Babesia microti (strain RI) TaxID=1133968 RepID=I7IFK2_BABMR)

HSP 1 Score: 71.6 bits (174), Expect = 5.200e-15
Identity = 29/34 (85.29%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGH+VLTTT+GI+DHEEARRKHTGGKILGFF+
Sbjct:   97 RQFGHLVLTTTYGIIDHEEARRKHTGGKILGFFF 130
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: U6KGY3_9EIME (40S ribosomal protein S15A, putative n=1 Tax=Eimeria mitis TaxID=44415 RepID=U6KGY3_9EIME)

HSP 1 Score: 71.2 bits (173), Expect = 6.230e-15
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGH+VLTT +GIMDHEEARRKHTGGKILGFF+
Sbjct:   90 RQFGHLVLTTAYGIMDHEEARRKHTGGKILGFFF 123
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: A9UVI4_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UVI4_MONBE)

HSP 1 Score: 71.2 bits (173), Expect = 7.200e-15
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGHIVLTT  GIMDHEEARRKHTGGKILGFFY
Sbjct:   96 RQFGHIVLTTADGIMDHEEARRKHTGGKILGFFY 129
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BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Match: Q4UDC9_THEAN (40s ribosomal protein s15a, putative n=5 Tax=Theileria TaxID=5873 RepID=Q4UDC9_THEAN)

HSP 1 Score: 71.2 bits (173), Expect = 7.370e-15
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 102
            +QFGH+VLTT +GIMDHEEARRKHTGGKILGFF+
Sbjct:   97 RQFGHLVLTTAYGIMDHEEARRKHTGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79896.19291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0G4FBF8_9ALVE1.290e-1588.24Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S3PA85_9STRA1.290e-1588.24Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
D7G3J4_ECTSI2.240e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A5A8DQB0_CAFRO2.310e-1591.18Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A7APZ9_BABBO3.680e-1588.24Ribosomal protein S8 family protein n=6 Tax=Eukary... [more]
A0A812JFE9_9DINO3.680e-1591.18RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]
I7IFK2_BABMR5.200e-1585.29Small subunit ribosomal protein S15Ae n=1 Tax=Babe... [more]
U6KGY3_9EIME6.230e-1585.2940S ribosomal protein S15A, putative n=1 Tax=Eimer... [more]
A9UVI4_MONBE7.200e-1591.18Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
Q4UDC9_THEAN7.370e-1585.2940s ribosomal protein s15a, putative n=5 Tax=Theil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79896contigEcto-sp13_S_contig79896:429..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score74.3
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7G3J4
Preferred namerps15a
Model size105
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009987,GO:0010259,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
Cds size105
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.2284636-CDS-Ecto-sp13_S_contig79896:428..5331681464070.2284636-CDS-Ecto-sp13_S_contig79896:428..533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79896 429..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79896.19291.1prot_Ecto-sp13_S_contig79896.19291.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79896 429..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79896.19291.1

>prot_Ecto-sp13_S_contig79896.19291.1 ID=prot_Ecto-sp13_S_contig79896.19291.1|Name=mRNA_Ecto-sp13_S_contig79896.19291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
KQFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY*
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mRNA from alignment at Ecto-sp13_S_contig79896:429..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79896.19291.1 ID=mRNA_Ecto-sp13_S_contig79896.19291.1|Name=mRNA_Ecto-sp13_S_contig79896.19291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79896:429..533+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACAGTTTGGACACATCGTCTTGACGACCACGTTTGGCATCATGGACCA
CGAGGAGGCGCGCCGCAAGCACACCGGTGGCAAGATCCTCGGCTTCTTCT
ACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79896:429..533+

>mRNA_Ecto-sp13_S_contig79896.19291.1 ID=mRNA_Ecto-sp13_S_contig79896.19291.1|Name=mRNA_Ecto-sp13_S_contig79896.19291.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79896:429..533+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAACAGTTTGGACACATCGTCTTGACGACCACGTTTGGCATCATGGACCA
CGAGGAGGCGCGCCGCAAGCACACCGGTGGCAAGATCCTCGGCTTCTTCT
ACTAA
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