mRNA_Ecto-sp13_S_contig7987.19287.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7987.19287.1
Unique NamemRNA_Ecto-sp13_S_contig7987.19287.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: D7G400_ECTSI (CCT-eta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G400_ECTSI)

HSP 1 Score: 486 bits (1250), Expect = 5.620e-168
Identity = 254/256 (99.22%), Postives = 255/256 (99.61%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 798
            +ATGGKVQTSIHGIT DVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA
Sbjct:  325 KATGGKVQTSIHGITADVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 580
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A6H5JXK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXK9_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 1.650e-166
Identity = 251/256 (98.05%), Postives = 252/256 (98.44%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 798
            +ATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQ    GAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA
Sbjct:  170 KATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQ----GAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 421
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A836CEV1_9STRA (T-complex protein 1 subunit eta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV1_9STRA)

HSP 1 Score: 354 bits (909), Expect = 2.050e-116
Identity = 182/258 (70.54%), Postives = 211/258 (81.78%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGG-PISAGMGXXXXXXXXXXXGRGQRP-GVKMMKGRGGA 798
            +ATGG+VQ++  GI   V+G CE+FEE QLG ER+NLFTGCP+ARTATIVLRGGSEQF+EES RS+HD+LM+VKR LK  EVVAGGGAIEMELSKALR+ S+ I GK+QL+M + AKALEI+PRQL++NAG D+TD+LNRLR  HA+ GD G+W GV VD E VCDT   GVWEPTINKRN+LRSA EAACLILSIDETV+NPQSE+ GAPSQGVGLGRGG PISAGMG           GRG+ P GV+ MKGR GA
Sbjct:  325 RATGGRVQSTTSGIEASVLGTCEKFEEVQLGEERFNLFTGCPKARTATIVLRGGSEQFLEESQRSMHDALMVVKRSLKACEVVAGGGAIEMELSKALREASRAISGKEQLVMGAVAKALEIVPRQLSENAGLDSTDVLNRLRHAHAQPGDGGRWIGVSVDEEDVCDTMAKGVWEPTINKRNALRSAIEAACLILSIDETVRNPQSEQPGAPSQGVGLGRGGQPISAGMGGMGMAGMMGA-GRGKLPRGVRAMKGRAGA 581
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A7S3HGG0_9STRA (T-complex protein 1 subunit eta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGG0_9STRA)

HSP 1 Score: 315 bits (806), Expect = 4.420e-104
Identity = 153/216 (70.83%), Postives = 182/216 (84.26%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARG-GDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGV 675
            +ATG  VQTS+ GIT  V+G CE FEE  LG+ER+N FTGCP+A+TATI+LRGG EQF+EE+ RS+HD+LMIVKR + +R+VVAGGGAIEMELS  LR HS+TI GKQQLIM++YA+A E+IPRQLA+NAG D+TD+LNRLR++HA   GD G+WFGVDV  EG+CDT ESGVWEP  NK NSL +ATEAAC ILSIDETV+NPQSEK GA SQGV
Sbjct:   76 KATGAAVQTSVFGITEKVLGLCEVFEEKGLGDERYNFFTGCPKAKTATIILRGGGEQFLEETDRSVHDALMIVKRAMASRKVVAGGGAIEMELSHVLRMHSRTILGKQQLIMNAYARAFEVIPRQLAENAGIDSTDVLNRLRKEHATAKGDEGRWFGVDVLNEGICDTLESGVWEPAANKLNSLAAATEAACCILSIDETVRNPQSEKPGAASQGV 291
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A7S3YMJ2_HETAK (T-complex protein 1 subunit eta (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YMJ2_HETAK)

HSP 1 Score: 318 bits (814), Expect = 2.370e-103
Identity = 153/227 (67.40%), Postives = 191/227 (84.14%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGM 711
            QATG  +QTS+ GI   V+G C ++EE Q+GNER+ +F+GCP ARTAT+VLRGG++QF+EESHRS HD+LM+VKR L ++EVVAGGGAIEMEL + LR  +  + GK+Q I+ ++A ALE+IP QLA NAGFD+TDLLNRLRQ+HA+   AG+WFG+DV  EG+ DTFE+G+WEPTINKRN+L +ATEAACL+LSIDETV+NPQSEK GAPSQGVGLG G P+SAGM
Sbjct:  258 QATGAVMQTSVFGIEDKVLGTCAKYEEVQVGNERFEVFSGCPAARTATLVLRGGADQFLEESHRSAHDALMVVKRALAHQEVVAGGGAIEMELHRRLRQDALAVVGKEQPIVEAFADALEVIPHQLAVNAGFDSTDLLNRLRQRHAQDR-AGRWFGIDVQEEGIFDTFEAGIWEPTINKRNALEAATEAACLLLSIDETVRNPQSEKPGAPSQGVGLGSG-PVSAGM 482
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A7S1U8Z7_9STRA (CCT-eta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Z7_9STRA)

HSP 1 Score: 318 bits (815), Expect = 7.630e-102
Identity = 163/266 (61.28%), Postives = 208/266 (78.20%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAP-SQGVGLG---------RGGPISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 798
            +ATG  +Q + H I    +G C+RFEE Q+G+ER+NLFTGCP +RTATIVLRGGSEQF++E+HRS+HD+L IVKR +++ EVVAGGGAIEME+SK +R+ +++I+GK+QLIM+  A+ALE+IPRQL+DNAGFDAT++LN+LR KHA+G  AGKW+GVDVD EG+ DTFESGVWEP  NK NS  +A+EAAC+ILSIDETV+NP+SE+ GA  + GVGLG         RG P+SA MG        XXX RG   GV+  +GRGGA
Sbjct:  355 KATGAVMQCTCHDINKSDLGRCDRFEERQVGDERYNLFTGCPRSRTATIVLRGGSEQFIDETHRSVHDALCIVKRAMRSGEVVAGGGAIEMEVSKFVREQARSIEGKEQLIMNGMARALEVIPRQLSDNAGFDATEVLNQLRMKHAKG-TAGKWYGVDVDVEGITDTFESGVWEPAANKMNSFAAASEAACVILSIDETVRNPRSEQPGAADANGVGLGAGAGGRGGRRGKPVSAAMGGGGMAGMMXXXRRGGPRGVRAFRGRGGA 619
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A485KV81_9STRA (CCT-eta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KV81_9STRA)

HSP 1 Score: 312 bits (800), Expect = 8.170e-100
Identity = 157/257 (61.09%), Postives = 206/257 (80.16%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGG-PISAGMGXXXXXXXXXXXGRGQRPGVKMMKGRGGA 798
            +ATGG +QTS+  +T  ++G C +FEE Q GNER+NLFT CP++++ TIVLRGG+EQF+EE+HRS+HD+LM+VKR +    VVAGGGAIEME+S+ LR++S+T++GK QL++++YAKA EIIPRQL+DNAG D+TD+LNRLRQKH +  + GKWFGVD++T G+CDTFES VWEP  NK NS+ +ATEAACLILS+DETV+NP+SE+   P  G+G G GG P+SA MG     XXXXXX  G   GV+  +G+GGA
Sbjct:  347 RATGGAIQTSVQDMTDKILGTCGKFEEQQCGNERYNLFTDCPKSKSTTIVLRGGAEQFIEEAHRSVHDALMVVKRTVATSTVVAGGGAIEMEISRHLREYSRTVEGKAQLLINAYAKAFEIIPRQLSDNAGHDSTDILNRLRQKHFKDPETGKWFGVDINTGGICDTFESHVWEPAANKINSVAAATEAACLILSVDETVRNPKSEQ---PQGGMGGGPGGAPMSAAMGGQGMKXXXXXXXGGLGKGVRAFRGKGGA 600
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A5A8CXC0_CAFRO (CCT-eta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CXC0_CAFRO)

HSP 1 Score: 311 bits (796), Expect = 2.430e-99
Identity = 155/266 (58.27%), Postives = 204/266 (76.69%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEK--QGAPSQGVG---LGRGGPISAGMGXXXXXXXXXXXGRGQRP------GVKMMKGRGG 795
            +ATGGKVQT++HG+ P V+G C  FEE Q+G ER+N+F GCP ARTAT+V+RGG++QF+ E+ RS+HD+LM+VK C+K+ EVVAGGGA+E+E+++ LRD+SKTI+GK QLI+++YA+ALE+IPRQLA+NAGFDATD+LN+LR  HA   +A KW GVD++ EG+CDT E GVWEPT +K NS  SATEAAC++LS+DETV+NP+SE+  Q   SQGVG    GRG  +S  MG           G+G R       GV+ M+GRGG
Sbjct:  334 KATGGKVQTTVHGLEPSVLGTCGDFEERQVGAERYNIFKGCPHARTATLVMRGGADQFIAETERSLHDALMVVKNCVKSTEVVAGGGAVELEVARHLRDYSKTIEGKLQLIVAAYARALELIPRQLAENAGFDATDILNKLRHAHAAKTEACKWIGVDIEHEGICDTMERGVWEPTASKCNSFASATEAACIVLSVDETVRNPKSEQAEQQRRSQGVGGRGFGRGAAMSQAMG-----------GQGMRGMVAGGRGVRQMQGRGG 588
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BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A5D6XQ58_9STRA (CCT-eta n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQ58_9STRA)

HSP 1 Score: 310 bits (795), Expect = 2.490e-99
Identity = 162/259 (62.55%), Postives = 211/259 (81.47%), Query Frame = 1 
Query:   25 SDQATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGXXXXXXXXXXXGRGQRP-GVKMMKGRGGA 798
            + +ATGG VQTS+H +TP V+G C RFEE Q+G ER+N+F  C +A++ATIVLRGG+EQF+EE+HRS+HD+LM+VKR + +  VVAGGGAIEME+S+ LR +++TI+GK QL++++YAKA E+IPRQ+ADNAG D+TD+LNRLRQKH +  D GKWFGVD+++ G+CDT+E+ VWEP  NK NS+ +ATEAACLILS+DETV+NP+SE+   P  G G G G P+SA MGXXXXXXXXXXX  G    GV+  +GRGGA
Sbjct:  322 TQRATGGVVQTSVHDMTPSVLGTCGRFEERQVGGERFNIFMDCSQAKSATIVLRGGAEQFIEEAHRSVHDALMVVKRTVASAAVVAGGGAIEMEVSRHLRQYARTIEGKAQLLVNAYAKAFEVIPRQIADNAGHDSTDILNRLRQKHFKDPDEGKWFGVDINSGGICDTYEAHVWEPAANKINSIAAATEAACLILSVDETVRNPKSEQ---PQGGPGQGGGAPMSAAMGXXXXXXXXXXXXXGGLGRGVRAFRGRGGA 577
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Match: A0A7S2CM60_9STRA (T-complex protein 1 subunit eta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CM60_9STRA)

HSP 1 Score: 310 bits (794), Expect = 3.240e-99
Identity = 144/215 (66.98%), Postives = 182/215 (84.65%), Query Frame = 1 
Query:   31 QATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTGCPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIEMELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNRLRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAACLILSIDETVKNPQSEKQGAPSQGV 675
            QATGG +Q++++ +TPD++G C  FEE Q+G ER+N+FT C  A+TATIVLRGGSEQF+EESHRSIHD+LMIVKR L +  VVAGGGAIEME+SK+LR+++KTI GKQQLI+S++AKALE++PRQL +NAGFDAT +LN LRQ HA  GD G+W GVD+DTEG+C+T ESGVWEP +NK NS  +A EAAC+ILSIDETV+NPQSE+ G  + G+
Sbjct:  327 QATGGHMQSTVNDLTPDILGECGEFEERQVGEERYNVFTKCTNAKTATIVLRGGSEQFIEESHRSIHDALMIVKRGLMSARVVAGGGAIEMEVSKSLREYAKTIMGKQQLIISAFAKALEVVPRQLCENAGFDATTVLNELRQSHALAGDVGRWSGVDMDTEGICNTMESGVWEPAVNKINSYTAAAEAACVILSIDETVRNPQSEQPGGAAGGM 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7987.19287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G400_ECTSI5.620e-16899.22CCT-eta n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JXK9_9PHAE1.650e-16698.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CEV1_9STRA2.050e-11670.54T-complex protein 1 subunit eta n=1 Tax=Tribonema ... [more]
A0A7S3HGG0_9STRA4.420e-10470.83T-complex protein 1 subunit eta n=1 Tax=Spumella e... [more]
A0A7S3YMJ2_HETAK2.370e-10367.40T-complex protein 1 subunit eta (Fragment) n=1 Tax... [more]
A0A7S1U8Z7_9STRA7.630e-10261.28CCT-eta n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
A0A485KV81_9STRA8.170e-10061.09CCT-eta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=... [more]
A0A5A8CXC0_CAFRO2.430e-9958.27CCT-eta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CXC0... [more]
A0A5D6XQ58_9STRA2.490e-9962.55CCT-eta n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
A0A7S2CM60_9STRA3.240e-9966.98T-complex protein 1 subunit eta n=1 Tax=Florenciel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7987contigEcto-sp13_S_contig7987:3948..7128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score485.0
Seed ortholog evalue2.3e-134
Seed eggNOG ortholog2880.D7G400
Preferred nameCCT7
Model size801
KEGG koko:K09499
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006457,GO:0006458,GO:0006810,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0042221,GO:0042802,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons6
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGsCOG0459@1,KOG0361@2759
Cds size801
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7987.19287.1prot_Ecto-sp13_S_contig7987.19287.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7987 3948..7128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.9507918-CDS-Ecto-sp13_S_contig7987:3947..41061681464069.9507918-CDS-Ecto-sp13_S_contig7987:3947..4106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 3948..4106 -
1681464069.969619-CDS-Ecto-sp13_S_contig7987:4605..47301681464069.969619-CDS-Ecto-sp13_S_contig7987:4605..4730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 4606..4730 -
1681464069.981906-CDS-Ecto-sp13_S_contig7987:5017..51261681464069.981906-CDS-Ecto-sp13_S_contig7987:5017..5126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 5018..5126 -
1681464069.992548-CDS-Ecto-sp13_S_contig7987:5711..58461681464069.992548-CDS-Ecto-sp13_S_contig7987:5711..5846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 5712..5846 -
1681464070.003075-CDS-Ecto-sp13_S_contig7987:6384..64561681464070.003075-CDS-Ecto-sp13_S_contig7987:6384..6456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 6385..6456 -
1681464070.0205512-CDS-Ecto-sp13_S_contig7987:6927..71281681464070.0205512-CDS-Ecto-sp13_S_contig7987:6927..7128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 6928..7128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7987.19287.1

>prot_Ecto-sp13_S_contig7987.19287.1 ID=prot_Ecto-sp13_S_contig7987.19287.1|Name=mRNA_Ecto-sp13_S_contig7987.19287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
VSGRPCYPSDQATGGKVQTSIHGITPDVVGHCERFEETQLGNERWNLFTG
CPEARTATIVLRGGSEQFMEESHRSIHDSLMIVKRCLKNREVVAGGGAIE
MELSKALRDHSKTIKGKQQLIMSSYAKALEIIPRQLADNAGFDATDLLNR
LRQKHARGGDAGKWFGVDVDTEGVCDTFESGVWEPTINKRNSLRSATEAA
CLILSIDETVKNPQSEKQGAPSQGVGLGRGGPISAGMGGQGMAGMMGGGG
RGQRPGVKMMKGRGGA*
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mRNA from alignment at Ecto-sp13_S_contig7987:3948..7128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7987.19287.1 ID=mRNA_Ecto-sp13_S_contig7987.19287.1|Name=mRNA_Ecto-sp13_S_contig7987.19287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3181bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7987:3948..7128- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCTGGTCGACCTTGCTATCCCTCGGACCAGGCAACGGGAGGCAAGGT
GCAGACGTCCATCCACGGGATCACGCCCGATGTGGTTGGACACTGCGAGA
GGTTCGAGGAGACGCAGCTAGGAAACGAACGGTGGAACCTCTTCACCGGC
TGCCCCGAGGCGCGAACGGCAACCATTGTCCTCAGGGGTGGCTCGGAGCA
GGTATGAGAACACTCGTTGTGTGATGCGGGTGTTGCTGTTGCTGTTGCTG
TTGCTGCTGTTGCTGCTGTCGGTGATGTCGGGGCGTGTTGGCGTTGTTGT
TGGTGGTTGTGCTGGTTCGTTGTTTGGTGATCTTGCGGTGCAGGTCAACG
ATCGAAGATACGAAATCGGCGTTGATGTGGGGGATAGAGCATGTCCGCCT
GCCATGGAGCAACCCACGTTTTGTTTTGTTTGTGTCAGTGTGAGTGACGT
GTGAAGTGAGATGACACACCCTCCCCGTTCGCATGGGAGATTTTTCCCAG
CCGCTCCGCCACTCGTGTGTGTGTGTGTGTGTTTTTTTTGTCGCCTGTTT
GCCTTGCTTTCCTTTGCACGTCCTCTCACTCTCTGTGGTCTTCTTAGTCC
CTCTTCCTTATCTTTGACCTCGCCACATACCTTGGCCTCCCATCCCGACT
AATGCCATTCATCATCGAACAGTTCATGGAGGAGTCTCACAGAAGCATCC
ACGACTCGCTCATGATCGTCAAGCGCTGCCTCAAGAACCGTGAGGTACGG
TGATGGTATGCATACGGTACGGTGTTGCCTTGTAGTGACCACCATGGTAG
TGACGCCGTACGTTCTCCGTTTCGCTGTGTGACTTGGGAATGAGATGGAT
ATTTAGCTGATGTGGCCCGTTCGTTGCAAGGGGTCTCCGCTGGAAGTTGC
TGCCGTGGGCGGAGATAAGGAATATCACGATCACATTTTCTGTCTCGAAA
TTTGCCATCACTCGACATGTACAAGGCAAGAGGTGTGCGAGTGTTGGAGT
AACGGCGTTTTGTTTCTCGAATTGGCGACATCCGACATGTTTAACTCAAA
GACGTGTGCACCGTTCCATCACGAGGGTACAGCTTGCACGTCGGCTCCAT
GACCATATCAGACAGAACTTCCTCGACTATCAAGGCCTTTCCGCCGTGCG
GATCGTTGCATACTGACGCCATTTTTTTTTCGTACCTTTCCGTTCCGTCC
CCTTCCTTTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGCTCC
GCTCGGTTTCCATATTCCGTCCCGTGCCGCAGGTAGTGGCCGGAGGGGGT
GCCATCGAGATGGAGCTTTCCAAGGCTCTCCGCGACCACTCCAAGACCAT
CAAGGGGAAGCAGCAGCTGATCATGAGCTCTTACGCAAAGGCGTTGGAGA
TCATCCCCAGGCAGCTGGTGAGTTGGCCGGCCAGAGGGTCGCCGCGAAAA
TCACCGAACCGTTCTATGAATAGAAATTGATCATTGTGTTGTGTGTTACT
TGAAAAAATGTTCGAAATACAACGAAATACTGTCGCACGAAAACAAAGTG
GTGGGGTTCGAGAGGGCACGGTGTGGTACACACGTACTTGAAGTTGCGGT
GAGATGTTCTCTGAGCACAGCTGTTATTGGTTGCTCTCGTTGGTTGTACA
CGGCAGCCTTGGTGTTGGTCACATGATTTGTTGGCCCGGGTTTCGAGGTA
ATTCCCACGTGGTTGTGAGATCGATGGGGGGCTCCGCGCATTGGACGGGC
TTGAGGACCCGGATGTTTCGGTGTAGCGTCGGCAGGTGCCATATTTTGCT
GTTGATGCGGTTTGCGGTATGCTGTATTTCGTGTAAAGAAAACAACTTTT
ATTTATCAGAGGCATTTTACTCTCTTGATAGCTTCGTGGTTCGTCCTACT
GAAGTTGCCTTGCGATAAAATGCCGAGCAGCGCATTTTCTTTTTTTAGTG
CTGCCTCACCTCCTTTCTCGTCTCATCGTCCGTTCTTTTTTTTGCTCTCC
AGGCGGACAATGCCGGGTTTGACGCGACGGACTTGTTGAACCGTCTCCGA
CAGAAGCACGCCAGGGGTGGCGATGCGGGCAAGTGGTTCGGAGTCGACGT
CGACACTGAGGGTGAGCATGCCATCAAGAACGTCAACAGATGATTATATT
CTCCTGCCCCCGTTATCTTTTTGTCGGTTCGTCATTCCGTAGTTTTTTTT
TTCTTGTTGATACGTCCCGTGCCGCTGGTCTGGTCGTGCTTCCCTCTCAG
AACCTTGTTACTTTTTTTTTTTTCCTCCCGTGTTTTGGATGATTTTCAAG
TGATTTTTACGATATAGCAATGTATATCTGTCGTGATTTCCTTGCGGACC
GGCGTTCGTATCGCACCATTGCTCATTTTTTTTTGCCTTTTGTGGTAGGT
GTGTGCGACACCTTCGAGTCTGGCGTGTGGGAGCCGACGATCAACAAGCG
AAACTCGCTTCGGTCGGCAACGGAGGCTGCTTGCCTCATCCTGTCCATCG
ACGAAACTGTCAAGAACCCCCAGGTCTGTCATCTCTTCTTGTTTTTATTG
GTTGTGATGTTGTTTAGCTCATTTTTTCCGGGCGTTTGTGTCGCGGCTAG
ATGAAACCGAAATGTCCCGAATCATACGCGACTGGATCGTGTTCAAGCTG
TCGTTAATGTACCCTTCTCCTGCTGGTCTTGCGCGTGTCTGCCTGTACAG
TAATAGCGCGTTGCTGCTGTTGGTTGCTTGTTTGACTGTATGCATAGCTG
TATACCACCCTGGTAGATTCTGTTTGAAGCCCTTAATCTAGCCACGCGTG
GAAAATTCGTCAGTGCAACGGACGATGCAACAGAGGGAGTACCGGGAGAA
TGTAGTTTACTCTACGTGGAACACGCCTGGCTTGTGTCCGCGCCAATAAT
CACACACGGTCTTTGTATATACACCCTTCTTCTGGCAGCACCTCTCCTTG
TATCGCTTTGCGCCCACCCCTAACACCACCGCTGTGTGCTTGCCTTGCAA
ACCAAACCGGTTCGACACGCAGAGCGAAAAGCAGGGGGCTCCGAGCCAGG
GCGTTGGGCTGGGCCGGGGAGGCCCGATCAGCGCAGGGATGGGGGGACAG
GGGATGGCGGGAATGATGGGGGGGGGGGGGCGCGGCCAGAGGCCCGGAGT
AAAGATGATGAAGGGCAGGGGAGGCGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7987:3948..7128-

>mRNA_Ecto-sp13_S_contig7987.19287.1 ID=mRNA_Ecto-sp13_S_contig7987.19287.1|Name=mRNA_Ecto-sp13_S_contig7987.19287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7987:3948..7128- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCTCTGGTCGACCTTGCTATCCCTCGGACCAGGCAACGGGAGGCAAGGT
GCAGACGTCCATCCACGGGATCACGCCCGATGTGGTTGGACACTGCGAGA
GGTTCGAGGAGACGCAGCTAGGAAACGAACGGTGGAACCTCTTCACCGGC
TGCCCCGAGGCGCGAACGGCAACCATTGTCCTCAGGGGTGGCTCGGAGCA
GTTCATGGAGGAGTCTCACAGAAGCATCCACGACTCGCTCATGATCGTCA
AGCGCTGCCTCAAGAACCGTGAGGTAGTGGCCGGAGGGGGTGCCATCGAG
ATGGAGCTTTCCAAGGCTCTCCGCGACCACTCCAAGACCATCAAGGGGAA
GCAGCAGCTGATCATGAGCTCTTACGCAAAGGCGTTGGAGATCATCCCCA
GGCAGCTGGCGGACAATGCCGGGTTTGACGCGACGGACTTGTTGAACCGT
CTCCGACAGAAGCACGCCAGGGGTGGCGATGCGGGCAAGTGGTTCGGAGT
CGACGTCGACACTGAGGGTGTGTGCGACACCTTCGAGTCTGGCGTGTGGG
AGCCGACGATCAACAAGCGAAACTCGCTTCGGTCGGCAACGGAGGCTGCT
TGCCTCATCCTGTCCATCGACGAAACTGTCAAGAACCCCCAGAGCGAAAA
GCAGGGGGCTCCGAGCCAGGGCGTTGGGCTGGGCCGGGGAGGCCCGATCA
GCGCAGGGATGGGGGGACAGGGGATGGCGGGAATGATGGGGGGGGGGGGG
CGCGGCCAGAGGCCCGGAGTAAAGATGATGAAGGGCAGGGGAGGCGCGTA
A
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