mRNA_Ecto-sp13_S_contig7987.19286.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7987.19286.1
Unique NamemRNA_Ecto-sp13_S_contig7987.19286.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7987.19286.1 vs. uniprot
Match: D7G3Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z9_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 9.460e-125
Identity = 198/212 (93.40%), Postives = 202/212 (95.28%), Query Frame = 2 
Query:   20 MSTDASASAAVVKDVAPVNAAPALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREAQEEEKRKFEKARAKVARLESKRKVLVGVGDMVGPPGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWKDELPSDFGLFNDVSEEPLMDGQSIDTVLAPNKPSSAKKAVSTRGGSRATGAASIRLPRPYVGVLWAARLG 655
            MSTDASASA VVKD APVNA PALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREA EEEKRKFEKARAKVARLE+KRKVL+GVGDMVGPPGCDPSECSSASVAVDLG QDTVRDVKKRLIAEAGW+DELPSDFGLFNDVSEEPLMDGQSID  LAP+KPSSAKK VS RGGSRAT AASIRLPRPYVGVLWAARLG
Sbjct:    1 MSTDASASAPVVKDAAPVNAVPALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREAHEEEKRKFEKARAKVARLENKRKVLIGVGDMVGPPGCDPSECSSASVAVDLGLQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKGVSRRGGSRATAAASIRLPRPYVGVLWAARLG 212
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BLAST of mRNA_Ecto-sp13_S_contig7987.19286.1 vs. uniprot
Match: A0A6H5K1B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B8_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.440e-65
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 2 
Query:  302 VLVGVGDMVGPPGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWKDELPSDFGLFNDVSEEPLMDGQSIDTVLAPNKPSSAKKAVSTRGGSRATGAASIRLPRPYVGVLWAARLG 655
            VL+GVGDMVGPPGCDPSE SSASVAVD+GPQDTV DVKKRLIA AGW DELPSDFGLFNDVS+EPLMDGQS+D  LAPNKPSS+KKAVS RGGSRAT AASIRLPRPYVGVLWAARLG
Sbjct:   16 VLIGVGDMVGPPGCDPSEYSSASVAVDVGPQDTVWDVKKRLIAVAGWTDELPSDFGLFNDVSDEPLMDGQSVDAALAPNKPSSSKKAVSRRGGSRATAAASIRLPRPYVGVLWAARLG 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7987.19286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3Z9_ECTSI9.460e-12593.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1B8_9PHAE1.440e-6588.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7987contigEcto-sp13_S_contig7987:811..2435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size788
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000650.1
Cds size639
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.8705785-UTR-Ecto-sp13_S_contig7987:810..9401681464069.8705785-UTR-Ecto-sp13_S_contig7987:810..940Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7987 811..940 -
1681464069.9143035-UTR-Ecto-sp13_S_contig7987:2416..24351681464069.9143035-UTR-Ecto-sp13_S_contig7987:2416..2435Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7987 2417..2435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.8845625-CDS-Ecto-sp13_S_contig7987:940..12971681464069.8845625-CDS-Ecto-sp13_S_contig7987:940..1297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 941..1297 -
1681464069.8940237-CDS-Ecto-sp13_S_contig7987:1569..17101681464069.8940237-CDS-Ecto-sp13_S_contig7987:1569..1710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 1570..1710 -
1681464069.903778-CDS-Ecto-sp13_S_contig7987:2275..24161681464069.903778-CDS-Ecto-sp13_S_contig7987:2275..2416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7987 2276..2416 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7987.19286.1prot_Ecto-sp13_S_contig7987.19286.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7987 941..2416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7987.19286.1

>prot_Ecto-sp13_S_contig7987.19286.1 ID=prot_Ecto-sp13_S_contig7987.19286.1|Name=mRNA_Ecto-sp13_S_contig7987.19286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=213bp
MSTDASASAAVVKDVAPVNAAPALAAGTPAATGANSVASTANQILFKNEL
YTSMKQKTMDQELMARFNREAQEEEKRKFEKARAKVARLESKRKVLVGVG
DMVGPPGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWKDELPSDFG
LFNDVSEEPLMDGQSIDTVLAPNKPSSAKKAVSTRGGSRATGAASIRLPR
PYVGVLWAARLG*
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mRNA from alignment at Ecto-sp13_S_contig7987:811..2435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7987.19286.1 ID=mRNA_Ecto-sp13_S_contig7987.19286.1|Name=mRNA_Ecto-sp13_S_contig7987.19286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7987:811..2435- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACGCGCATTGGTAGCCATGTCGACAGATGCAAGCGCCTCGGCTGCCG
TGGTCAAAGATGTCGCCCCAGTTAATGCCGCACCTGCGTTGGCGGCCGGC
ACACCGGCCGCGACCGGCGCTAACAGCGTTGCCAGCACGGCGAACCAGAT
CCTTTTCAAGGTTAGATCAACTTCGTTTTCGGCCTGACTGCCACTCTGCT
TTGCCTACAGCATACATACTTCATCCTTGTCGCATGCCTGGGGATGCGCG
CGTGCGAGCGCATCGCGGGCGACAGGTCCACATGCTTGGCTCTGCCTTGG
TCGAGTGGTGAATGATTGATGGCAGCAAAGCGGAATATTTTGAGCAGGTT
GCTGGAATGGAAGGTACATGTCAATGATGCTGTGCATATTTCACAAGTCT
ACCTGCTACATTTCGTACCAAGCTCGATCTACCGTAAAGGTTTGGGAGTC
ACATCATGCAAGAATGTACAAAGAACAGGCGGTAACTCTCCACGTGTTTC
GTGCCTTCTTTGTTTCTTCGGGCATTTGTTGAATACCAGTAATTTCACTC
GAGCTCCGGTACAGGAATCGAAATCACCACCCGCGGGCATGACAACAAAG
TCAAATTGGGTTCTCTGCCACCGGGCGATCGTAACCATTGGCGTCCTAAG
AACGGTACTTGGTTCAACCAACAGTGTTTACACCCCTTCCGCGATTCGTT
TCGACCGTGGCCGATGCCCTTGTAGAATGAGCTCTACACGAGCATGAAGC
AGAAAACAATGGACCAAGAGCTGATGGCAAGATTCAACAGAGAGGCCCAA
GAAGAGGAGAAGCGAAAGTTTGAGAAAGCGAGGGCAAAGGTGGCTCGGCT
GGAAAGCAAGAGAAAGGCAAGCTGTCGAGGGAGAACACTGCGGAAGTAAA
GCCAGAGGGCGTAGAGCCCTGATGTTGCAGAAAAGCCGGGATGACACACG
GCGTACATCCAAATCTAGATATGCGGAGCCTTCCAGTCAATGTGTGCGTA
ATGTCCGTCCTCCCAGCCTACCTTTAATTCTTCAGGTTTCTCAGCCGCCG
AACGGTTTTTTTCCAATAAAAAGCAGAACATTTTCAGACGCGTTCCGATA
GACGATGGTTTTCAAAAACCATCAACATTGTGCAACAGGTCCTGGTAGGC
GTCGGCGACATGGTCGGTCCACCGGGGTGCGACCCCAGCGAATGCTCCTC
CGCCTCCGTCGCGGTGGATCTGGGGCCTCAAGACACCGTTCGGGACGTCA
AGAAGAGGCTCATTGCCGAGGCCGGCTGGAAGGACGAGCTGCCCTCCGAC
TTCGGTCTCTTCAACGACGTGTCGGAGGAACCTTTGATGGATGGGCAGTC
GATAGATACGGTGTTGGCACCAAACAAACCGTCGTCGGCTAAAAAAGCGG
TGTCAACGCGAGGCGGTAGTAGAGCTACTGGGGCTGCATCGATTCGTCTT
CCTCGTCCGTATGTAGGTGTGTTGTGGGCGGCAAGATTGGGTTGACGACC
ACCGACAATTGCGGCGTGATGTTTCATGTTCGTGAAGGCCTCAAGGAGTG
AACGTAAAGACACATACTGTAGAAGATAATGATAACTCTTCTCTTTCACC
AGTGAGCTGTAAGGGAGCGATGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7987:811..2435-

>mRNA_Ecto-sp13_S_contig7987.19286.1 ID=mRNA_Ecto-sp13_S_contig7987.19286.1|Name=mRNA_Ecto-sp13_S_contig7987.19286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=639bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7987:811..2435- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACAGATGCAAGCGCCTCGGCTGCCGTGGTCAAAGATGTCGCCCC
AGTTAATGCCGCACCTGCGTTGGCGGCCGGCACACCGGCCGCGACCGGCG
CTAACAGCGTTGCCAGCACGGCGAACCAGATCCTTTTCAAGAATGAGCTC
TACACGAGCATGAAGCAGAAAACAATGGACCAAGAGCTGATGGCAAGATT
CAACAGAGAGGCCCAAGAAGAGGAGAAGCGAAAGTTTGAGAAAGCGAGGG
CAAAGGTGGCTCGGCTGGAAAGCAAGAGAAAGGTCCTGGTAGGCGTCGGC
GACATGGTCGGTCCACCGGGGTGCGACCCCAGCGAATGCTCCTCCGCCTC
CGTCGCGGTGGATCTGGGGCCTCAAGACACCGTTCGGGACGTCAAGAAGA
GGCTCATTGCCGAGGCCGGCTGGAAGGACGAGCTGCCCTCCGACTTCGGT
CTCTTCAACGACGTGTCGGAGGAACCTTTGATGGATGGGCAGTCGATAGA
TACGGTGTTGGCACCAAACAAACCGTCGTCGGCTAAAAAAGCGGTGTCAA
CGCGAGGCGGTAGTAGAGCTACTGGGGCTGCATCGATTCGTCTTCCTCGT
CCGTATGTAGGTGTGTTGTGGGCGGCAAGATTGGGTTGA
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