mRNA_Ecto-sp13_S_contig7985.19285.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7985.19285.1
Unique NamemRNA_Ecto-sp13_S_contig7985.19285.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7985.19285.1 vs. uniprot
Match: D7FY80_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80_ECTSI)

HSP 1 Score: 473 bits (1216), Expect = 3.020e-162
Identity = 266/303 (87.79%), Postives = 272/303 (89.77%), Query Frame = 1 
Query:  130 MGRMAVANAKTAPLKPRCRKVGARCRFEGCTGRPWFAKPGSRVPRACKAHKDEGEVNVYAPACEADGCMTRPHYGVDGGRARFXXKHKLDWMVDVLNKRCAMKGCRRQPSWARERGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSEENTETAGXXXXXTAAAHPGPARYCAAHAPAGATNVTASLCRHPGGCSVQPYFGREGGGQQPEFCALHRKPGMTDVRNPRCAAVGCTAQPRCGREGDPRPSFCLRHAAPDMINFRSAGYRDRGKAPPPKRKKLAKSSSAPSR 1038
            MGRMAVANAKTAP KPRCRKVGARCRFEGCTGRPWFA+PGSRVPRACKAHK+EGEVNVYAPACEAD C TRPHYG DGGRARFXXKHKLD MVDVLNKRCA KGCRRQPSWARER  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSE+NTET       TAAAHPGPARYCAAHAPAGATNVTAS CRHPGGCSVQPYFGREGGGQQP+FCALHRKPGMTDVRNPRC AVGCTAQPRCGREGDPR           M+NFRSAGYRDRGKA  PKR+KLA SSSAPSR
Sbjct:    1 MGRMAVANAKTAPSKPRCRKVGARCRFEGCTGRPWFAQPGSRVPRACKAHKEEGEVNVYAPACEADACTTRPHYGADGGRARFXXKHKLDGMVDVLNKRCAKKGCRRQPSWARERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSGAVATTKSQPSEDNTETTAGGAAATAAAHPGPARYCAAHAPAGATNVTASRCRHPGGCSVQPYFGREGGGQQPKFCALHRKPGMTDVRNPRCTAVGCTAQPRCGREGDPRXXXXXXXXXXXMVNFRSAGYRDRGKATTPKRRKLAISSSAPSR 303
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7985.19285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY80_ECTSI3.020e-16287.79EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY80... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7985contigEcto-sp13_S_contig7985:1956..5901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.9
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D8LFX6
Model size1676
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size1041
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7985.19285.1prot_Ecto-sp13_S_contig7985.19285.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7985 1956..5266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.7682776-CDS-Ecto-sp13_S_contig7985:1955..21341681464069.7682776-CDS-Ecto-sp13_S_contig7985:1955..2134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 1956..2134 +
1681464069.7795246-CDS-Ecto-sp13_S_contig7985:2534..27481681464069.7795246-CDS-Ecto-sp13_S_contig7985:2534..2748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 2535..2748 +
1681464069.790661-CDS-Ecto-sp13_S_contig7985:3120..32251681464069.790661-CDS-Ecto-sp13_S_contig7985:3120..3225Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 3121..3225 +
1681464069.801863-CDS-Ecto-sp13_S_contig7985:3600..39531681464069.801863-CDS-Ecto-sp13_S_contig7985:3600..3953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 3601..3953 +
1681464069.8124323-CDS-Ecto-sp13_S_contig7985:4538..46431681464069.8124323-CDS-Ecto-sp13_S_contig7985:4538..4643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 4539..4643 +
1681464069.8231215-CDS-Ecto-sp13_S_contig7985:5181..52661681464069.8231215-CDS-Ecto-sp13_S_contig7985:5181..5266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7985 5182..5266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.8345087-UTR-Ecto-sp13_S_contig7985:5266..59011681464069.8345087-UTR-Ecto-sp13_S_contig7985:5266..5901Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7985 5267..5901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7985.19285.1

>prot_Ecto-sp13_S_contig7985.19285.1 ID=prot_Ecto-sp13_S_contig7985.19285.1|Name=mRNA_Ecto-sp13_S_contig7985.19285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MARKEMTTWTSPIQPQMQQQQQQQQQQQPEPPPFPVKNGFLKGMGRMAVA
NAKTAPLKPRCRKVGARCRFEGCTGRPWFAKPGSRVPRACKAHKDEGEVN
VYAPACEADGCMTRPHYGVDGGRARFCCKHKLDWMVDVLNKRCAMKGCRR
QPSWARERGARALFCKEHKEDGMVDTKHKTCLHPGCTRFPSKSGAVATTK
SQPSEENTETAGGGGAATAAAHPGPARYCAAHAPAGATNVTASLCRHPGG
CSVQPYFGREGGGQQPEFCALHRKPGMTDVRNPRCAAVGCTAQPRCGREG
DPRPSFCLRHAAPDMINFRSAGYRDRGKAPPPKRKKLAKSSSAPSR*
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mRNA from alignment at Ecto-sp13_S_contig7985:1956..5901+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7985.19285.1 ID=mRNA_Ecto-sp13_S_contig7985.19285.1|Name=mRNA_Ecto-sp13_S_contig7985.19285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3946bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7985:1956..5901+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGGAAAGAGATGACAACCTGGACTTCACCTATCCAACCGCAGAT
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGCCACCACCTT
TCCCCGTGAAAAATGGTTTTCTCAAAGGCATGGGGAGAATGGCAGTCGCA
AACGCGAAGACGGCGCCCTTGAAACCGAGGTATGATATGCACACGAATGG
GAGAGAGATCTCGCTTGAGAGTCGCTCGAGGAACGGTTGGGGTGTCCTCG
CTTTTCTGGGTTGGATTGCTGTGCCTCTGCCGTTGTTGGTCGATCGAACA
TACCGGCGAAGATCTACAGTAAATACTTCCAGAGTTGTGTCCCTCAACAA
CAAGCATTTCGTGTGATGAGACGATGTACGTGCATCATGACTTTGTCCGT
TTATTTTGCTGAACACCGTGTGCGCACACGCAAACTGGTAGCACCCATTC
CGCTCTGAATGGGTTGCTCGAGATATTTCCCACCCCTGGTGCCACGACGT
AGCTCACTGGACAGATCTATCTTGCACGACCTAAGCAAACTACCCCATCC
TGGTTATTTTCGGACGTATGATCAAACAGATGTCGGAAGGTAGGTGCTCG
GTGCCGGTTCGAGGGCTGCACTGGGCGTCCTTGGTTCGCGAAGCCGGGCT
CCCGAGTCCCAAGGGCATGCAAGGCCCATAAGGACGAGGGGGAGGTCAAC
GTTTACGCGCCAGCCTGCGAAGCGGATGGGTGTATGACGAGGCCGCACTA
CGGCGTGGACGGCGGGCGGGCGAGGTTCTGTTGCAAGCACAAGGTGCGTT
GTTTTTTGTTGTTTACATCACAGTAACGACTCTCCGCGGTATTGTGAAGG
AGTAGGCGTTCAATGCCAACTCTGTAACCCTGTGGAAGGCAGGCAGGGCG
TCTGGCTGAGGAATTTCAGTTTCACTCGTGTGTGCTCCACCTACGCTAAT
CTTCGCCAGAAACGCCATCACTAACATACGGGGAAGACACGTTTGGTAGC
CTACGTTGGTTCATATTGCTGGCTGGGTTGGTCAAGAACAACCAGATACG
ATACTGGTAGACCATTGCTTACACTTCATGCCCCCTTTCGTTTACCCTCT
GTGACCCTTTTGACCCGTTGGGATCCTCGTCATTTCCTTGGCGACGCTTT
CGACGGGTGCTGCAGCTTGACTGGATGGTTGATGTGCTCAACAAACGCTG
TGCGATGAAAGGGTGCCGAAGGCAGCCGAGCTGGGCCAGAGAAAGAGGAG
CTCGAGCTCTTTTCTGCAAGGTACTTCCTACGCCTCGTACTCTTGACGGC
TCGAAGTACTATTTTCGATGCTGCGATCCACGCTATTGTTGGTAAACCAC
CATCTATGTAATATATTGTTGCTATTGCCTCTTGAACTGGGCAGAGAGAT
CGGAACAGTGTTAACTGTTAAGATAACAACAGCAATTGCTGCTTATGCTG
TAAATGCTCTGCCGTCGACACTCAACTTCCTTTCTTGAACTGGGCAGAGA
GATCGGAACAGTGTTAACTGTTAAGATAACAACAACAATTGCTGCTTATG
CTGTAAATGCTCTGCCGTCGACACTCAACTTCCTTGCTACACCACCGCTC
TCGTCGATACCCACACGAACCCTCGCCCTTCCTCACCCCCGACAGGAGCA
CAAAGAGGACGGCATGGTGGACACAAAGCACAAGACGTGCTTACACCCGG
GTTGCACGCGGTTTCCCTCGAAAAGCGGTGCCGTGGCAACGACCAAGTCG
CAACCCTCCGAGGAGAACACAGAAACAGCGGGGGGAGGGGGGGCAGCAAC
AGCGGCGGCCCACCCGGGACCAGCGAGGTACTGCGCCGCCCACGCTCCGG
CGGGAGCGACGAACGTGACCGCTAGCCTGTGCCGGCACCCCGGCGGCTGC
TCCGTGCAACCGTACTTCGGGCGGGAGGGGGGGGGGCAGCAGCCGGAGTT
CTGCGCTCTGCACCGGAAGCCGGGGATGACGGATGTCCGGAACCCCAGGT
CTGTGCGGAATGCTTTCGTATTTGGTTTGGCCTGTGGCGCCTGTGCTTAT
GTGTGCGCGCTTCTTTGGATGGCGCGTCGCTTCGTATGTATTCGGTTGTA
GTTTGCCTCCTTTTGTGAGGCGTTGGTATAGCAGGCAGAGGGATATGCGC
GGATTTTCTCTGTCCACGTGCCCGTCGGGGGCCGCGCCACGTCACCGGTA
ACGGCGTGACCTACGTACATATATTTTTTGTTTTTTTCTGAACTCCCGGA
CTACCTGTTTTCGCGTTCGCTTGAAGTCCCAGTCGAGGTGACGTGCTTCG
TTTGGTTTTTTGTTTGCACCTCCCACCCCCCCTCCCGAAACCCGGTTCAA
CCGCCCCCAAATATTTCGGAGTGTAGTCTCCACTCGGACACTCAGACACG
TTCTGAACTGGGTTCGGTCCAGACTTGTTTTGAAGTGGTTACATCAAGCA
CGGTGTCATGGATAAACGTTGAGGCGTCAAGGGAGTTCGTGTTATACTCC
AAGGTTGTAGAGTGGCTTTCTTCCTTTGCCTGGTCCTAGCGACGCTCAAC
CTCAAGCCTTATCCACTTTTTTCACATCTGCAGGTGCGCCGCGGTGGGAT
GTACGGCGCAACCCCGGTGCGGGCGGGAGGGGGACCCGCGCCCTTCGTTT
TGCCTGCGCCACGCAGCGCCGGACATGATCAATTTCAGGTTGGTAGTTAC
CCCTTTTGTATTTTCAACGTAGCGTGGGAGACGTCTAATTTTGTACATAT
CCCTGGATCTTGAGGTGTGTTTTGTTCTTGTAGAATGGATGCTTTATCAT
CAAGCAGGGTTTTGCAAGACTTCGTGGGGATGAACGCGAAACTTCATCTT
TGCGTACGATTTTTATTTTGCCCCTTTCGTGGATTTTCGGGTCTTGTGGC
CGTTGTGTGAACGTATGGCATGGAGACCAACTTGCATTTGGACGGAGCCC
GCAAAGGGAGAACATTTTTTCTCTCGTCAACATCAACCCTTTGCTCACTC
GACGCTTGTGGGCCTGGATTGTTTCACTTCTAGTTGATTCACGAGGACAC
ATCCAATCGGATATTCGCTTCTATTCGCATCTTTTTGGAGCGATCAACGT
TGTATATGACTTGATGGCAACCACGAAGGGAGCACCCCCCTGTGGTCACT
CCTTTTCCCGCTAGCACTTCTCGTTTTGACGGTATTCTCACGTATGCATA
CCCCTGTCGCTGGTGCACTCTCTCAGGTCAGCAGGCTACCGAGACCGAGG
AAAGGCGCCACCGCCGAAAAGGAAGAAGCTTGCGAAGTCATCGTCGGCCC
CTTCGCGGTAAAAATTTTTCCGGGGATGGGTGGTCTCGAATAAGGGGAAG
AGAGATCTTGACCCGTAAAGGCGAATGGGGGTAGGTAGGGAGAACAGTAG
TATACCTTGATGAAAGCATGGTTGTGGTGTAAACGCCTCCGGCGTGATGG
ATGCACAAGCTTGGGAAAGGGAGAACAGTAGTTTGCCTTGTTGAAAAACA
GGACGCATTGGTCATGATTGTAACGCCGTCGGGTTGATGGATGCACAAGC
TTGGAGCTTGGTGCGCCGTTTGGTTGGTCCGTTTCGATTTTTTTGAGCGT
TGTGTGGCGGCGGGCTGGCCGTCACTGAGCTGAGGTCATGCTCGTGAGTA
GTTTTCTTTTTGCTTGTTTCGATTTGGAATCGTTTGATGCAGTTTTAGGT
GGCTGCCGGTTGCTTGATGTTTTCGGGTGGGGCCACAGGTGTGCCCCGTC
ATATGTGTGCGCGTGTTCGTTTTTGGTTGTTGTCCGTCAGTGAGCGGAGT
ATGCCTTTTGCCCCTACCGATTATCGGGGGTATCCCTTTGAGAGCCCCTC
CGCCATCGCGTGGAGTTATCAATTCTAGTGTCGCGGGTGCTCAACACCTC
TCAGTTGCTTTCACCCACAGGGGTGTGTGCGTGCGAACACGTCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7985:1956..5901+

>mRNA_Ecto-sp13_S_contig7985.19285.1 ID=mRNA_Ecto-sp13_S_contig7985.19285.1|Name=mRNA_Ecto-sp13_S_contig7985.19285.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7985:1956..5901+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGGAAAGAGATGACAACCTGGACTTCACCTATCCAACCGCAGAT
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGCCACCACCTT
TCCCCGTGAAAAATGGTTTTCTCAAAGGCATGGGGAGAATGGCAGTCGCA
AACGCGAAGACGGCGCCCTTGAAACCGAGATGTCGGAAGGTAGGTGCTCG
GTGCCGGTTCGAGGGCTGCACTGGGCGTCCTTGGTTCGCGAAGCCGGGCT
CCCGAGTCCCAAGGGCATGCAAGGCCCATAAGGACGAGGGGGAGGTCAAC
GTTTACGCGCCAGCCTGCGAAGCGGATGGGTGTATGACGAGGCCGCACTA
CGGCGTGGACGGCGGGCGGGCGAGGTTCTGTTGCAAGCACAAGCTTGACT
GGATGGTTGATGTGCTCAACAAACGCTGTGCGATGAAAGGGTGCCGAAGG
CAGCCGAGCTGGGCCAGAGAAAGAGGAGCTCGAGCTCTTTTCTGCAAGGA
GCACAAAGAGGACGGCATGGTGGACACAAAGCACAAGACGTGCTTACACC
CGGGTTGCACGCGGTTTCCCTCGAAAAGCGGTGCCGTGGCAACGACCAAG
TCGCAACCCTCCGAGGAGAACACAGAAACAGCGGGGGGAGGGGGGGCAGC
AACAGCGGCGGCCCACCCGGGACCAGCGAGGTACTGCGCCGCCCACGCTC
CGGCGGGAGCGACGAACGTGACCGCTAGCCTGTGCCGGCACCCCGGCGGC
TGCTCCGTGCAACCGTACTTCGGGCGGGAGGGGGGGGGGCAGCAGCCGGA
GTTCTGCGCTCTGCACCGGAAGCCGGGGATGACGGATGTCCGGAACCCCA
GGTGCGCCGCGGTGGGATGTACGGCGCAACCCCGGTGCGGGCGGGAGGGG
GACCCGCGCCCTTCGTTTTGCCTGCGCCACGCAGCGCCGGACATGATCAA
TTTCAGGTCAGCAGGCTACCGAGACCGAGGAAAGGCGCCACCGCCGAAAA
GGAAGAAGCTTGCGAAGTCATCGTCGGCCCCTTCGCGGTAA
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