mRNA_Ecto-sp13_S_contig7982.19283.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7982.19283.1
Unique NamemRNA_Ecto-sp13_S_contig7982.19283.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: D8LRF8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI)

HSP 1 Score: 936 bits (2420), Expect = 0.000e+0
Identity = 580/656 (88.41%), Postives = 599/656 (91.31%), Query Frame = 1 
Query:  322 MTVSTAAQLASLVESTNCSDGAFVVSWQGGLTLSEPVVVGNSTTLSIEGVGDGAILDGGGGSRLFQVSGGASLFLENLDLRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGLNSGWDDSDDGFGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYGGGVYANGGVAQVDVLDSVFTGNFASDMASWSSSVFHAGGALYVIGQAAVSIKSSTFSGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNARGGGIMINNEGPFDVNFTDTVFLDNWSGGNGGGLWAFLTAGELTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGNGEMAVQAEGCHLEGNKADAQGGGMAVDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGYMRGNSAELVAWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVFATGGTNFTSNVAEIGGGAVNAWGSGSSFWASEGCGFAGNVAGGAXXXXXXXXXXXXXSSGDSYSPTVDPGGPAGGAIYVTNGGAVSVLDSTLSGNSAHGRGGGLYCAGDANVTVARAGFVGHESG 2289
            MTVSTAAQLA+LVESTNCSDGAFVVSWQG LTLSEPVVVGNSTTLSIEGVGDG++LDGGGGSRLFQVSGGASLFL+NL+LRN SAPYY+GGGAIYADGE VSLLVSSCNFT NRAPL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEG NS WD+ D G GGAVGLSGGTPQLAFHECELRHNNAT  GGAVYSD+GAS+T+NSTLLDGNWAG  GGGV+  G VAQVDVLDSVFTGNFASD ASWSSS+ H GGALYV GQAAVSIKSS+F+GNGAEG XXXXXXXXXXXXXXXXXXXXXLGNA+GGGIMI NEGPFDVNFTDT F DNWSGGNG GLWAFLTAG LTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSG+GEMAVQAE CHLEGN+A AQGGGMA+DGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFV GG+MRGNSAEL AW LWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAV ATGGTNFTSNVAEIGGGAVNAWGS                    XXXXXXXXXXX  SSGDSYSPTVDPGGPAGGAIYVTNGGAVSVLDSTLS NSAHGRGGGLYCAGDANVTVARAGF GHESG
Sbjct:    1 MTVSTAAQLATLVESTNCSDGAFVVSWQGALTLSEPVVVGNSTTLSIEGVGDGSVLDGGGGSRLFQVSGGASLFLQNLELRNGSAPYYNGGGAIYADGEHVSLLVSSCNFTANRAPLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGPNSAWDNFDVGVGGAVGLSGGTPQLAFHECELRHNNATSYGGAVYSDAGASVTMNSTLLDGNWAGEDGGGVHVKGDVAQVDVLDSVFTGNFASDSASWSSSLSHVGGALYVFGQAAVSIKSSSFTGNGAEGXXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTAFSDNWSGGNGAGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEAGAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVRGGFMRGNSAELGAWGLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVSATGGTNFTSNVAEIGGGAVNAWGSXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXSDSSGDSYSPTVDPGGPAGGAIYVTNGGAVSVLDSTLSENSAHGRGGGLYCAGDANVTVARAGFAGHESG 655
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE)

HSP 1 Score: 757 bits (1955), Expect = 1.550e-258
Identity = 454/585 (77.61%), Postives = 476/585 (81.37%), Query Frame = 1 
Query:  790 AVTARKTLFLANVAEGLNSGWDDSDDGFGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYGGGVYANGGVAQVDVLDSVFTGNFASDMASWSSSVFHAGGALYVIGQAAVSIKSSTFSGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNARGGGIMINNEGPFDVNFTDTVFLDNWSGGNGGGLWAFLTAGELTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGNGEMAVQAEGCHLEGNKADAQGGGMAVDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGYMRGNSAELVAWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVFATGGTNFTSNVAEIGGGAVNAWGSGSSFWASEGCGFAGNVAGGAXXXXXXXXXXXXXSSGDSYSPTVDPGGPAGGAIYVTNGGAVSVLDSTLSG-------NSAHGRGGGLYCAGD-ANVTVARAGFVGHESGQXXX-IHCF---------------------------ECALWAVNSTFEGNTATGDGGGMTVSSASTANINFCDFIDN 2436
            AVTA+KTLFL+NVAEG NSGWDD D G GGAVGLSGGTPQ+AFHECELR NNATD+GGAVYSDSGASITV STLLDGNWAGGYGGGVYANGGVAQVDVLDSVFTGNFASDMASWSSSV HAGGALY++GQAAVSIKSS+F+GNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNA+GGGIMI NEGPFDVNFTDTV  DNWSGGNGGGLWAFL AG L LLRTNFSNNAVAYREGFFDVP SHRGGGVWVSGNGEM VQAEGCHLEGN+ADAQGGGMAVDGGVLRAA CGFSGNVAGRGGAIAA         VVFVSGGYMRGNSAEL++WNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGG SLSAGSAV ATGGT+FTSNVAEIGGGAVN WGSGSSFWASEGCGF GNVAGGAXXXXXXXXXX   SSGDSYSPTVDPGGPAGGAIYVTNGGAV+   S L+        N A G   G+Y  G+   V V  + F G+ + +    +  F                           ECALWAVNS             MTVSS STANINFC FIDN
Sbjct:    7 AVTAQKTLFLSNVAEGPNSGWDDFDVGVGGAVGLSGGTPQVAFHECELRRNNATDNGGAVYSDSGASITVTSTLLDGNWAGGYGGGVYANGGVAQVDVLDSVFTGNFASDMASWSSSVSHAGGALYIVGQAAVSIKSSSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTVLSDNWSGGNGGGLWAFLNAGNLILLRTNFSNNAVAYREGFFDVPGSHRGGGVWVSGNGEMTVQAEGCHLEGNEADAQGGGMAVDGGVLRAADCGFSGNVAGRGGAIAAXXXXXXXXXVVFVSGGYMRGNSAELISWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGFGGGGSLSAGSAVSATGGTSFTSNVAEIGGGAVNTWGSGSSFWASEGCGFTGNVAGGAXXXXXXXXXXSD-SSGDSYSPTVDPGGPAGGAIYVTNGGAVAENGSDLTAAGCAFADNQAGGXXXGVYGTGEETRVIVESSSFTGNAAEKVGGGLRAFLLGVLRTXXXXXXXXXXXXXXXXXXXXECALWAVNSXXXXXXXXXXXXXMTVSSTSTANINFCHFIDN 590
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A6H5JWU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU3_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 1.070e-61
Identity = 108/117 (92.31%), Postives = 115/117 (98.29%), Query Frame = 1 
Query:  322 MTVSTAAQLASLVESTNCSDGAFVVSWQGGLTLSEPVVVGNSTTLSIEGVGDGAILDGGGGSRLFQVSGGASLFLENLDLRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPL 672
            M VSTAAQLA+LVE+TNCS+GAFVVSWQG LTLSEPV+VGNSTTLS+EGVGDGA+LDGGGGSRLFQVSGGASLFLENL+LRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPL
Sbjct:    1 MNVSTAAQLATLVENTNCSNGAFVVSWQGALTLSEPVLVGNSTTLSVEGVGDGAVLDGGGGSRLFQVSGGASLFLENLELRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPL 117
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.710e-18
Identity = 50/70 (71.43%), Postives = 53/70 (75.71%), Query Frame = 1 
Query: 2278 HESGQXXXIHCFECALWAVNSTFEGNTATGDGGGMTVSSASTANINFCDFIDN----LGPKGVVVVVRCD 2475
            H   Q   IHCFECALWAV+STFEGNTATGDGGGMTVSSASTANINFC FIDN    +G   V   +RCD
Sbjct:   19 HAGEQGGGIHCFECALWAVHSTFEGNTATGDGGGMTVSSASTANINFCHFIDNSVLQVGESVVFAAMRCD 88
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A836CF41_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF41_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.410e-7
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:  355 LVESTNCSDGAFVVSWQGGLTLSEPVVVGNSTTLSIEGVG---DGAILDGGGGSRLFQVSGGASLFLENLDLRNASAPY--YSGGGAIYADGEDVSLLVSSCNFTGNR 663
            L E+T C      V W+G + L+EP++VGN T+L I+GVG   D A + G   +++  V  GAS+ L +L+LR+  A     SG G       D  LLV +C F  NR
Sbjct:   40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRDGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A835Z719_9STRA (UCH domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z719_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.080e-7
Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  355 LVESTNCSDGAFVVSWQGGLTLSEPVVVGNSTTLSIEGVG---DGAILDGGGGSRLFQVSGGASLFLENLDLR--NASAPYYSGGGAIYADGEDVSLLVSSCNFTGNR 663
            L E+T C      V W+G + L+EP++VGN T+L I+GVG   D A + G   +++  V  GAS+ L +L+LR   A     SG G       D  LLV +C F  NR
Sbjct:   40 LTEATVCPGQNITVKWRGFVGLTEPIIVGNGTSLVIDGVGTESDPAAISGQNKTQVLHVQKGASVTLRHLELRVGRAMVDGISGEGGAVRVFRDGQLLVEACQFRLNR 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A271J9V9_9BACT (Uncharacterized protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A271J9V9_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 3.520e-6
Identity = 137/461 (29.72%), Postives = 188/461 (40.78%), Query Frame = 1 
Query:  514 FQVSGGASLFLENLDLRN---ASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRAPLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTARKTLFLANVAEGLNSGWDDSDD------GFGGAVGLSGGTPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGY--------GGGVYANGGVAQVDVLDSVFTGNFASDM------------------------ASWSSSVFHAGGALYVIGQAAVSIKSSTFSGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNARGGGIMINNEGPFDV---NFTDTVFLDNWSGGNGGGLWAFLTAGELTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGNGEMAVQAEGCHLEGNKADAQGGGMAVDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGYMRGNSA 1764
            F +S   +L L  + L       A    GGG +Y DG   +L V+   FTGNRA                   XXXXXXXXXXXXXXXXXXX X A  +   + +   AE   SG + SD+      G GGAV L+ GT  LA        N A + GGA++  +GA++T + ++   N A G         GG VY  GG   VD+ +S+FT N A                           + ++      GGA+ V+G+AAV+I +S F  N A+ +                           GG ++   G   V       +    N+S   GGGL+AF   G L +  +  S+N    R        S   GG  + G  ++ ++     + GN A   GGG+    G L        GN A RGG + A G    SA    V G  +  N A
Sbjct:  299 FWISSDGTLSLSGVTLDGNIAEGAGTDQGGGGVYVDGG--TLTVTDAMFTGNRAT-------------GASASXXXXXXXXXXXXXXXXXXXLXRAQRSGGAIEVMGGAEVGISGAEFSDNDAAPSPGDGGAVHLADGTLTLA--STTFSRNYARNQGGALWVAAGATLTDHGSVFSENTARGLARQTPFLCGGAVYVGGGT--VDLTESMFTSNRAHTCRXXXXXXXXXXXXXXXXXXXXXXXSGYADDSQVDGGAIAVVGEAAVTISTSEFIDNQAQSS---------------------------GGAIVALRGFSSVAPLTIEGSAVTGNFSVFGGGGLYAF--GGTLEISTSVLSDNRTGLR-------GSQDAGGALLLGRSDVTIRES--LIWGNSATGNGGGIDASDGSLSILNTTIHGNTALRGGGLFALG----SANFALVEGSTLTDNQA 698
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Match: A0A836CDQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDQ4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.380e-5
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:  355 LVESTNCSDGAFVVSWQGGLTLSEPVVVGNSTTLSIEGVG---DGAILDGGGGSRLFQVSGGASLFLENLDLRNASAPYYSGGGAIYADGEDVSLLVSSCNFTGNRA 666
            L E+  C D    V W+G + ++EP++VG+ TTL I G G   + A + G   ++L +V  GAS+ L+ L LR+        GGAI+ DG+      S+  F  N A
Sbjct:   45 LTEAAACRDQNITVQWRGFVNVTEPIIVGDGTTLVINGWGADSEPAAISGQHATQLLRVQNGASVTLQELRLRDGFVEAGGDGGAIFNDGD---FTCSNSTFAINTA 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7982.19283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LRF8_ECTSI0.000e+088.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUM3_9PHAE1.550e-25877.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWU3_9PHAE1.070e-6192.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRF7_ECTSI1.710e-1871.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CF41_9STRA4.410e-738.89Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z719_9STRA8.080e-738.89UCH domain-containing protein n=2 Tax=Tribonema mi... [more]
A0A271J9V9_9BACT3.520e-629.72Uncharacterized protein n=2 Tax=Bacteroidetes/Chlo... [more]
A0A836CDQ4_9STRA1.380e-535.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7982contigEcto-sp13_S_contig7982:109..6857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.6
Seed ortholog evalue5e-10
Seed eggNOG ortholog2880.D7FHH1
Model size2475
Hectar predicted targeting categorysignal anchor
Exons7
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionPectin lyase fold/virulence factor
Ec32 orthologEc-18_004370.2
Cds size2475
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7982.19283.1prot_Ecto-sp13_S_contig7982.19283.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7982 109..6857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.5597372-CDS-Ecto-sp13_S_contig7982:108..6271681464069.5597372-CDS-Ecto-sp13_S_contig7982:108..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 109..627 +
1681464069.5731995-CDS-Ecto-sp13_S_contig7982:955..10691681464069.5731995-CDS-Ecto-sp13_S_contig7982:955..1069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 956..1069 +
1681464069.5836484-CDS-Ecto-sp13_S_contig7982:1706..18121681464069.5836484-CDS-Ecto-sp13_S_contig7982:1706..1812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 1707..1812 +
1681464069.5931377-CDS-Ecto-sp13_S_contig7982:2143..24781681464069.5931377-CDS-Ecto-sp13_S_contig7982:2143..2478Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 2144..2478 +
1681464069.6033762-CDS-Ecto-sp13_S_contig7982:3035..32931681464069.6033762-CDS-Ecto-sp13_S_contig7982:3035..3293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 3036..3293 +
1681464069.617163-CDS-Ecto-sp13_S_contig7982:4363..53201681464069.617163-CDS-Ecto-sp13_S_contig7982:4363..5320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 4364..5320 +
1681464069.638943-CDS-Ecto-sp13_S_contig7982:6671..68571681464069.638943-CDS-Ecto-sp13_S_contig7982:6671..6857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7982 6672..6857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7982.19283.1

>prot_Ecto-sp13_S_contig7982.19283.1 ID=prot_Ecto-sp13_S_contig7982.19283.1|Name=mRNA_Ecto-sp13_S_contig7982.19283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=825bp
RHSIEAKSTRRMFMGTTEVALSSCGRSTTRRAKVRPRSPPSSCCSSSSIS
SSISNRGVTSTLGIATTTTTTTTASVLLMSLAVFAGRFSSSFAQQAAPPA
CSPASAEMTVSTAAQLASLVESTNCSDGAFVVSWQGGLTLSEPVVVGNST
TLSIEGVGDGAILDGGGGSRLFQVSGGASLFLENLDLRNASAPYYSGGGA
IYADGEDVSLLVSSCNFTGNRAPLHGGAILSTGAGSIIALNDCRFEGNTA
EHQGGAVMAISASAVTARKTLFLANVAEGLNSGWDDSDDGFGGAVGLSGG
TPQLAFHECELRHNNATDDGGAVYSDSGASITVNSTLLDGNWAGGYGGGV
YANGGVAQVDVLDSVFTGNFASDMASWSSSVFHAGGALYVIGQAAVSIKS
STFSGNGAEGAGAAYFDGSNSISVEGSSFVGNLGNARGGGIMINNEGPFD
VNFTDTVFLDNWSGGNGGGLWAFLTAGELTLLRTNFSNNAVAYREGFFDV
PNSHRGGGVWVSGNGEMAVQAEGCHLEGNKADAQGGGMAVDGGVLRAAGC
GFSGNVAGRGGAIAAAGEDDDSAAVVFVSGGYMRGNSAELVAWNLWYGYG
GGLFAQDGAQAVLDGVALDGNSAGFGGGVSLSAGSAVFATGGTNFTSNVA
EIGGGAVNAWGSGSSFWASEGCGFAGNVAGGAAAAAARSTSSGSDSSGDS
YSPTVDPGGPAGGAIYVTNGGAVSVLDSTLSGNSAHGRGGGLYCAGDANV
TVARAGFVGHESGQGGGIHCFECALWAVNSTFEGNTATGDGGGMTVSSAS
TANINFCDFIDNLGPKGVVVVVRCD
back to top

mRNA from alignment at Ecto-sp13_S_contig7982:109..6857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7982.19283.1 ID=mRNA_Ecto-sp13_S_contig7982.19283.1|Name=mRNA_Ecto-sp13_S_contig7982.19283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7982:109..6857+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACTCGATCGAGGCAAAGTCGACCAGAAGAATGTTTATGGGTACCAC
CGAAGTTGCTCTGAGTAGCTGCGGCAGGAGCACAACAAGGCGGGCAAAAG
TGCGACCTCGGTCACCACCCTCAAGCTGCTGCAGCAGCAGCAGCATCAGC
AGCAGCATCAGCAACAGGGGTGTAACGAGCACTCTCGGTATAGCAACTAC
TACGACGACGACGACGACGGCGTCGGTGCTGCTGATGTCCTTAGCGGTCT
TCGCCGGCCGTTTTTCGTCGTCCTTCGCGCAGCAGGCAGCGCCACCCGCC
TGCTCCCCAGCATCTGCGGAGATGACGGTGTCCACTGCTGCGCAGCTGGC
GAGCCTGGTGGAAAGCACCAACTGCTCCGATGGGGCGTTCGTGGTGTCCT
GGCAAGGGGGGCTGACCCTGTCGGAGCCCGTGGTGGTGGGGAACTCTACT
ACGCTGTCCATCGAGGGGGTTGGGGACGGCGCTATTCTGGATGGAGGTGG
TGGTAGTCGGCTCTTTCAGGTGTGTTGTTGTTGTTGTTGGTGTTGGTGTT
GGCGGTGGTGGCGGAGGCGGTGTTGTTTTGTTGTTATGTACCAGATCATA
TGTACTTACAGAGTACTGCCCCGACTTGTCGTGATATCGACTCAAGCTAC
AAGATGTTGTTGATGTTAATTTTGTATCTTGTTGCTGTTGCTGTAGTTGC
TGATCATGTATCACAGTACTTCACAACAGTACAGCGCGTGATTGATCGTA
TTCTCGGCTCGCTTGAGCCGCCATCAAATTTGACCAAACTCCCGTCGTTT
TCCTCCTTGACCCTTGTTCTGCCCTTGGACCCAACCCGGCATCACAGGTA
TCTGGGGGAGCGTCTTTGTTTTTGGAAAACTTGGACCTGCGGAATGCGTC
GGCGCCCTACTATAGCGGTGGTGGTGCCATCTACGCCGACGGCGAGGATG
TATCTCTTTTGGTGCGCACTCTACTTGTTGTTGTTGGTTTGTGGTTGTTG
TTGTTGTGGTTGACGTTGCTGCTGCTGTTGCTGGTGTTGGTCATGATGGT
TGTGTTGGGTTTGTTGTTGCTTCTGCTGTGGATGCTGCTGCAGTGTTGCT
GCTGCAGTGTTGCTGCTGCTGCTGCCGCTGCTGCCGTATTATAGGTCGGC
TGTTGTCTTACCTCCTACCCTGAGCATCCTCTCGAGTGTTCGTTCCATTT
ACAGCAGTTGTGGTCCCGCTATAAAGTGCGGGTTGAACAATGCCCGGTAT
GATGTCGGTGGAATCGTCAGGCTTAGATCGAGTTTTCAAGGTGTTTCATA
CTCTGAATATTGCCAGTTGCCCGCTGTATTGCTGATCCTGGCACCAACGC
CGGTCGTGGCGCCAATGCTTGTCGTGTCACCTACCGCCGGCATTATAGGA
CACTTGATTATTCTGGGACCCCCGCTGTGTTGAGATCCAATCAGCCCACC
ATTCACCCTCTCCCCGTGTCTCGATTCGTGCAGGCGTCCGAGATCCACCG
CGAAACACACTTCGCCCGTGGCTCAAACTCATCGGCCCGTGCTGACATTC
TCTCCCCCGCCCGGGCACCCCCTCTAATTGTACGTGAACATCGCTCAGGT
ATCATCGTGTAACTTCACGGGCAACAGGGCTCCCCTCCACGGAGGCGCTA
TCTTGTCGACCGGTGCCGGCTCCATCATTGCTCTCAACGACTGTCGCTTC
GAAGGTATACGCGGCATGGAAGAGACCCTTATCGGTGATCGAACCCTTTA
TTTGTTTTCGCGGACGGGGGGTGGGGAGCGCGTGCGTCTGTTGATTTCTG
TAGATGTGTTGTAGTTGTCGGTGAGCCTGTACAAGTAGCCACGGGGATCC
GGTTGTTCGACGGCTTAGCGCAGAGCAAAATTTCATGACCTGGTTTTCAG
TTGCGAAGACTGCAGAACATCAGTAGCAGCAACAAAATCATTAACACAGC
AACAACAGCAACAGCAACTGCCCAACAACAGCGAACGCAACAACAGCGAA
AGCAACAACAATAACAACAACAACAAACCACACAGGCAACACGGCCGAGC
ATCAAGGAGGAGCGGTGATGGCCATCTCCGCCTCGGCGGTTACCGCGCGC
AAGACCCTCTTCCTGGCGAACGTAGCGGAAGGACTAAACTCCGGCTGGGA
CGACTCTGACGACGGCTTCGGCGGGGCCGTCGGCCTGTCGGGAGGCACGC
CTCAGCTGGCTTTCCACGAGTGCGAGCTCCGGCACAACAACGCCACCGAC
GACGGAGGTGCGGTCTATTCGGATTCCGGCGCTAGCATCACGGTGAATTC
CACCTTGCTCGACGGGAACTGGGCGGGGGGATACGGCGGCGGGGTCTACG
CGAATGGGGGTGTCGCACAGGTGGGAGGGGGGGTCTTTGGTTTGCATCAC
CCGGTGACCAGCGTCGAGATGCCAGATTCAGTCTCAAGCGTGTAACTTTG
AGGCGTGGTGGTGGTCGCGCGTGCGTGTGATTTTTGGCAGTTGTATCGAC
GGCGCTAACCAGCATTCTCTGCGTTGTTTTGTGCTTGGCAGTACTCACAA
CGCGCGTTTGCGTTGCCCTCTGTAGACTGCTCGTTCGTGCTCCGTGTGCG
TATGCTCGCCTTGCTGGCAGATTCCCTTGTGCACGAGGTGTTAGCGCTCT
GTGTTAGTTGTTGTTTGTCGCCATCGTCGTCTTCGTTTGTGTTGTTGTGT
GATTCCCTTAATAATGGGCTAGTGGTGGCCTTGGCAGTAGTAAGATGTAC
CAGTATACTCGTACTACTCTTGAGGTGTTGAACGCTGCTTCTTTTCTTGA
CGAGGGTCAGTATCGCAGCTTGACGAGACACGACGGTTCGTGTACCTCTG
ACTCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCTCGCCCTCTCACGAA
CAATGCCGCGGCGGCGAACCAAATCAGGTTGACGTGCTCGACAGCGTCTT
CACCGGGAACTTCGCCTCCGACATGGCGAGCTGGTCATCGTCTGTGTTTC
ACGCAGGAGGAGCCCTCTACGTCATCGGTCAGGCGGCGGTCTCCATCAAG
TCGTCCACTTTTTCCGGCAACGGAGCGGAGGGCGCTGGTGCCGCGTATTT
TGATGGCAGCAACAGTATTTCCGTCGAGGGCTCGTCTTTCGTGGGGAATC
TCGGAAACGCCCGAGGCGGGGGAATCATGATCAACGTGAGTGATGAGTGT
TAACCTTAAGTCTGGGTCTAAGTCTGGTTTTTGTAGGGGCTACGGGGTTA
GGCACAGGAACGCGAAGCCCCGCATCTCTTTCAAGCTTGGAGAAGAACGC
GGTCCGTCTTGGAGCTGGGCCGGTTGGTTTTGCGTATGTACGTGTGGTTG
AGTGAGGATTAAGGGTTCGCACGCAACGTTGTTCGTCCCCATGCCTTCCT
TGATGGAAGAGTTTAAGCGACGGCTGTGTGTGTGTGTTTGCAGAGTTTTC
CACCCATTCAAAAAGTGATACAATTTTCTATATATTAATTCCAAAAAAGG
AAGGAAAAAGATGCCACCACGTATAAACAAGAGAACCTGGGAGTGGGCCA
TGAAGTTAGTGCTCAACAATTAAGATGTGGTCAATAACTTGGTCATGAGA
AGAGGTGCTTAGTTACGATTCCAACACTTCCAACCTGATTAGTTTTCACG
CGAGCCGTGAGCATTCGGCGGGCACGCACTGTGACGCCTCCCGGCGTCGG
GGGGTGACCTGAAACAGTGCTCCGCCTGTATGCTGCGTGGTTTGTGACGT
AGTTTGCGAATGTTTCACGACAAACTGATGTTTGAAGCAGTACGTTGGCC
TGTGCCCCCCCCTGGTGGACACCGGACAGTACCTGCAGTGGTGGCTTCAT
GTACGGTGTACGAGGGGGGTCAGGACAAGCCTATATATTTCCACACACTC
TTGTTTAATTTGTCTACTCCTGTAATATATTCATGTGTACGCTCTCTTTA
ACAATCTAACTTTAACTGCCGTACCGCCGCTAGTGCCTGTCGTTGTATAT
CTTATGCATGGCTCGTCCCCATTCCGCAAGGGAGACGGTCACGTGGACTA
CATGAGCCACACCCCGGTGATGGGCCCACGGTCTAGTGCACTTGCCGGGG
TTATGTTTTATTGTGTCACCCTACGAGTCCTTCCGCGCGTGTGTGTTGTC
CCACGCCACGCATCTCGTTTTTTGACCGCGCCCGCTCGCTTTTTTCGGAA
CTCCCCGCCGGTGTTTTTTTTCGTTTTTTTTTTCTGTATCTCTCGCGCCC
CTCAGAACGAAGGTCCCTTCGACGTCAACTTCACGGACACGGTTTTTTTG
GACAACTGGTCCGGCGGCAACGGCGGGGGGCTGTGGGCCTTCCTCACCGC
GGGCGAGCTGACCCTCCTCCGCACCAACTTCTCCAACAACGCGGTCGCGT
ACCGGGAGGGCTTCTTCGACGTCCCAAATTCTCACCGCGGCGGAGGCGTT
TGGGTCTCCGGGAACGGGGAGATGGCCGTTCAGGCGGAGGGCTGCCACCT
GGAGGGGAACAAGGCCGACGCGCAAGGGGGCGGGATGGCCGTCGACGGCG
GCGTGTTGCGCGCGGCCGGCTGCGGGTTCTCGGGCAACGTGGCCGGTCGC
GGCGGCGCGATCGCCGCGGCAGGGGAGGACGACGATTCGGCGGCGGTGGT
CTTCGTGAGCGGCGGTTACATGCGGGGGAACTCCGCGGAGCTTGTTGCCT
GGAACCTCTGGTACGGGTACGGGGGCGGCCTGTTCGCCCAGGACGGCGCT
CAGGCGGTCCTGGACGGGGTCGCCTTGGACGGGAACTCCGCGGGGTTCGG
TGGGGGGGTGTCCCTGTCGGCGGGGTCGGCGGTGTTCGCCACCGGCGGGA
CCAACTTCACATCCAACGTCGCCGAAATCGGGGGCGGCGCTGTCAACGCC
TGGGGGAGCGGCAGCAGCTTCTGGGCGTCGGAAGGGTGCGGCTTCGCCGG
CAATGTGGCCGGGGGCGCCGCCGCCGCCGCCGCCAGGTCGACCTCCAGCG
GCAGCGACAGCAGCGGCGACAGCTACAGCCCGACGGTGGACCCAGGGGGC
CCCGCGGGGGGCGCGATCTACGTCACGAACGGGGGGGCCGTGTCCGTGCT
GGACTCGACGCTGTCGGGGAACAGCGCCCACGGGCGCGGGGGCGGGCTGT
ACTGCGCGGGCGACGCCAATGTCACGGTCGCCCGCGCGGGGTTCGTCGGA
CATGAGTCCGGGGTGGGGGGGGGGGGGAGGCGCATGGGGGGGGGTGCGCC
GCCGTGGGGGGGGGCTCGGTGAGTGCATGGGATGCGGCGACATGACTACG
GCATGCAATAAGTCTGATCGATTTGATGACGTTGAGGTGCGACGACTTCG
TGGGTTGAGCATGAGCTGGTCAACTAGATGGCATTGAGAAAACGTATGAG
GAAAGCGCTAGGAGATAGTAGATGACGACCACGAAGTGCCAAGCATGAAG
AAAGTGTGGAAGATGGTAAGCAGCACGGAAATTCTACTCCCAGGAGATTG
CGGGAAAAGAGAATCGTGCACAACACCCGAGATACCGCTCGTTCAAGTGG
AGAAACTGCTGTGCTCCGTCCCGCGCGAGAGACGCGTGGTCAATCCCTTC
GGACAGGCAGGCAACCGAGGAGCACCCCTCCATGTCGCCCCGTACACCTC
CAAACAGCTACACCTCCAAGACTCAACGTCCCCCCCGCCCCCCCGCCCCC
CCCCGCCCCCCCCCCCCCTTTCCTCCAACAAGCTCAACCTCCAAGATTCG
ACCTTCACCGACAACCGGGCGCTGGGCACGTCCGGTGGTGCCGTCAGCGC
GGAGAATGGCTCGGACGTGACGGCGACCGGGTGCGTGTTTGCCGACAACC
AGGCGGGCGGCGGCGGCGGAGGCGTGTACGGCACGGGGGAGGAGACGAGG
GTCATGGTGAAATCAAGCTCGTTCACGGGTAACGCTGCCGAGAAGGTTGG
CGGAGGTCTGCGGGCGTTTTTGCTGGGGGTCCTTCGCACGGAGAGGTGAG
GAGGGGTAGAGAAGGGAAGGACAGCGGGAGGCAGAATGTTGAGGTCCGTT
GGCATAAATTGTGCACGGAGGTATGTGCGGTGGAGTTTCAGGAAGACTTG
GAGTGGGAGAGAGAAAGAGTAAGAGAGGGGAGAGAGAGTGTGTTTTTTGG
GGGGGGGGAGAGAAAGTAGAGAGGGAAGAGAGGGGGGGGGGGAGATAAGT
GAGGGAGAGAGCGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGATGTTCCCCCAACAAATGCAGAGAAAAGGTTTATCCCATGGGTCA
GTCACGAGGGGGCTCTGTTTCCTTGGTCCGCGCTGGAGAGAGACTCGATG
TGGCACACATTTCACCAACACTTGGAGCGCTTTTCCCTCTCTCGCTATCC
ATACATCTCTCTCTCCCTCTTCTCGTTCTCTTGCGCACCCCATCGCCACC
GCATTCTCGCGACTCATTTTACCCCCTCTCTGTCTCTCTCTTTTTTCATG
TTTGCGGTGACGGTGGCGGCGCGGCACTGTAGCTCTCGGTTCGATGGCAA
CCACGCAGGGGAGCAAGGCGGCGGCATCCACTGCTTCGAGTGCGCCCTGT
GGGCGGTCAACAGCACCTTCGAGGGCAACACGGCCACAGGGGACGGCGGG
GGGATGACAGTGTCGTCGGCCAGCACCGCCAACATCAACTTCTGCGACTT
CATCGACAATTTAGGTCCAAAGGGTGTTGTCGTCGTAGTGCGATGCGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7982:109..6857+

>mRNA_Ecto-sp13_S_contig7982.19283.1 ID=mRNA_Ecto-sp13_S_contig7982.19283.1|Name=mRNA_Ecto-sp13_S_contig7982.19283.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2475bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7982:109..6857+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACACTCGATCGAGGCAAAGTCGACCAGAAGAATGTTTATGGGTACCAC
CGAAGTTGCTCTGAGTAGCTGCGGCAGGAGCACAACAAGGCGGGCAAAAG
TGCGACCTCGGTCACCACCCTCAAGCTGCTGCAGCAGCAGCAGCATCAGC
AGCAGCATCAGCAACAGGGGTGTAACGAGCACTCTCGGTATAGCAACTAC
TACGACGACGACGACGACGGCGTCGGTGCTGCTGATGTCCTTAGCGGTCT
TCGCCGGCCGTTTTTCGTCGTCCTTCGCGCAGCAGGCAGCGCCACCCGCC
TGCTCCCCAGCATCTGCGGAGATGACGGTGTCCACTGCTGCGCAGCTGGC
GAGCCTGGTGGAAAGCACCAACTGCTCCGATGGGGCGTTCGTGGTGTCCT
GGCAAGGGGGGCTGACCCTGTCGGAGCCCGTGGTGGTGGGGAACTCTACT
ACGCTGTCCATCGAGGGGGTTGGGGACGGCGCTATTCTGGATGGAGGTGG
TGGTAGTCGGCTCTTTCAGGTATCTGGGGGAGCGTCTTTGTTTTTGGAAA
ACTTGGACCTGCGGAATGCGTCGGCGCCCTACTATAGCGGTGGTGGTGCC
ATCTACGCCGACGGCGAGGATGTATCTCTTTTGGTATCATCGTGTAACTT
CACGGGCAACAGGGCTCCCCTCCACGGAGGCGCTATCTTGTCGACCGGTG
CCGGCTCCATCATTGCTCTCAACGACTGTCGCTTCGAAGGCAACACGGCC
GAGCATCAAGGAGGAGCGGTGATGGCCATCTCCGCCTCGGCGGTTACCGC
GCGCAAGACCCTCTTCCTGGCGAACGTAGCGGAAGGACTAAACTCCGGCT
GGGACGACTCTGACGACGGCTTCGGCGGGGCCGTCGGCCTGTCGGGAGGC
ACGCCTCAGCTGGCTTTCCACGAGTGCGAGCTCCGGCACAACAACGCCAC
CGACGACGGAGGTGCGGTCTATTCGGATTCCGGCGCTAGCATCACGGTGA
ATTCCACCTTGCTCGACGGGAACTGGGCGGGGGGATACGGCGGCGGGGTC
TACGCGAATGGGGGTGTCGCACAGGTTGACGTGCTCGACAGCGTCTTCAC
CGGGAACTTCGCCTCCGACATGGCGAGCTGGTCATCGTCTGTGTTTCACG
CAGGAGGAGCCCTCTACGTCATCGGTCAGGCGGCGGTCTCCATCAAGTCG
TCCACTTTTTCCGGCAACGGAGCGGAGGGCGCTGGTGCCGCGTATTTTGA
TGGCAGCAACAGTATTTCCGTCGAGGGCTCGTCTTTCGTGGGGAATCTCG
GAAACGCCCGAGGCGGGGGAATCATGATCAACAACGAAGGTCCCTTCGAC
GTCAACTTCACGGACACGGTTTTTTTGGACAACTGGTCCGGCGGCAACGG
CGGGGGGCTGTGGGCCTTCCTCACCGCGGGCGAGCTGACCCTCCTCCGCA
CCAACTTCTCCAACAACGCGGTCGCGTACCGGGAGGGCTTCTTCGACGTC
CCAAATTCTCACCGCGGCGGAGGCGTTTGGGTCTCCGGGAACGGGGAGAT
GGCCGTTCAGGCGGAGGGCTGCCACCTGGAGGGGAACAAGGCCGACGCGC
AAGGGGGCGGGATGGCCGTCGACGGCGGCGTGTTGCGCGCGGCCGGCTGC
GGGTTCTCGGGCAACGTGGCCGGTCGCGGCGGCGCGATCGCCGCGGCAGG
GGAGGACGACGATTCGGCGGCGGTGGTCTTCGTGAGCGGCGGTTACATGC
GGGGGAACTCCGCGGAGCTTGTTGCCTGGAACCTCTGGTACGGGTACGGG
GGCGGCCTGTTCGCCCAGGACGGCGCTCAGGCGGTCCTGGACGGGGTCGC
CTTGGACGGGAACTCCGCGGGGTTCGGTGGGGGGGTGTCCCTGTCGGCGG
GGTCGGCGGTGTTCGCCACCGGCGGGACCAACTTCACATCCAACGTCGCC
GAAATCGGGGGCGGCGCTGTCAACGCCTGGGGGAGCGGCAGCAGCTTCTG
GGCGTCGGAAGGGTGCGGCTTCGCCGGCAATGTGGCCGGGGGCGCCGCCG
CCGCCGCCGCCAGGTCGACCTCCAGCGGCAGCGACAGCAGCGGCGACAGC
TACAGCCCGACGGTGGACCCAGGGGGCCCCGCGGGGGGCGCGATCTACGT
CACGAACGGGGGGGCCGTGTCCGTGCTGGACTCGACGCTGTCGGGGAACA
GCGCCCACGGGCGCGGGGGCGGGCTGTACTGCGCGGGCGACGCCAATGTC
ACGGTCGCCCGCGCGGGGTTCGTCGGACATGAGTCCGGGCAAGGCGGCGG
CATCCACTGCTTCGAGTGCGCCCTGTGGGCGGTCAACAGCACCTTCGAGG
GCAACACGGCCACAGGGGACGGCGGGGGGATGACAGTGTCGTCGGCCAGC
ACCGCCAACATCAACTTCTGCGACTTCATCGACAATTTAGGTCCAAAGGG
TGTTGTCGTCGTAGTGCGATGCGAT
back to top