mRNA_Ecto-sp13_S_contig123.1928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig123.1928.1
Unique NamemRNA_Ecto-sp13_S_contig123.1928.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig123.1928.1 vs. uniprot
Match: D7G901_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G901_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 3.100e-43
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 1 
Query:    1 MPDSAPPVCENCKPGKATDEREAAIEKMDCQASAATYDLVAACMEAHRGNVADCRTEWNDFTECHQESRRRSTGDA 228
            M DSAPPVCENCKPGKATDEREAAIEKMDCQA   TYD+VAACMEAHRGNVADCRTEWNDF ECH+ESR RSTGDA
Sbjct:    1 MSDSAPPVCENCKPGKATDEREAAIEKMDCQA---TYDVVAACMEAHRGNVADCRTEWNDFRECHKESRGRSTGDA 73
[Close]
BLAST of mRNA_Ecto-sp13_S_contig123.1928.1 vs. uniprot
Match: A0A6H5KSY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY6_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 4.220e-14
Identity = 34/54 (62.96%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 MPDSAPPVCENCKPGKATDEREAAIEKMDCQASAATYDLVAACMEAHRGNVADC 162
            MPDSAPP+CENCKPGKATDEREAAIEKMDC         V  C   H G+  +C
Sbjct:    1 MPDSAPPICENCKPGKATDEREAAIEKMDC--------YVRCCRCLHGGSQREC 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig123.1928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G901_ECTSI3.100e-4389.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSY6_9PHAE4.220e-1462.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig123contigEcto-sp13_S_contig123:31349..32222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.4
Seed ortholog evalue2.1e-32
Seed eggNOG ortholog2880.D7G901
Model size231
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CKQX@1,2SG1M@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002440.1
Cds size231
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462654.715582-CDS-Ecto-sp13_S_contig123:31348..314771681462654.715582-CDS-Ecto-sp13_S_contig123:31348..31477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 31349..31477 -
1681462654.7254105-CDS-Ecto-sp13_S_contig123:32120..322221681462654.7254105-CDS-Ecto-sp13_S_contig123:32120..32222Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig123 32121..32222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig123.1928.1prot_Ecto-sp13_S_contig123.1928.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig123 31349..32222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig123.1928.1

>prot_Ecto-sp13_S_contig123.1928.1 ID=prot_Ecto-sp13_S_contig123.1928.1|Name=mRNA_Ecto-sp13_S_contig123.1928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MPDSAPPVCENCKPGKATDEREAAIEKMDCQASAATYDLVAACMEAHRGN
VADCRTEWNDFTECHQESRRRSTGDA*
back to top

mRNA from alignment at Ecto-sp13_S_contig123:31349..32222-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig123.1928.1 ID=mRNA_Ecto-sp13_S_contig123.1928.1|Name=mRNA_Ecto-sp13_S_contig123.1928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:31349..32222- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGACTCGGCACCCCCCGTTTGCGAAAATTGCAAACCCGGCAAGGC
AACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGGTATAAGTGCTCACAGCGAGAGCTTTTATTTTGTACCCTCCGAAGACT
CAGTTACTCATCACGTAACCGATGAAGAACAAACATCTCCGAAGCAGTAC
CGTATAGTCGATGCGGAAAATAAACGAGAGTTATCTGGTATTTTCCGTGC
GGTCGGCGTCCCAACTGTTGGAGAAACAAGATGCTCGTGCAACAGCAGAA
CTGCAACTAACTTCGGCCCTCGGGGTTGACCCTCCGAAAGCGCCGTTATT
TTGTCTCCTTGTAAATAAACACGCAGCGCATTCGTCTCTCCTCTGGAGAG
TCCGCGATCCTTCTTTTCCCTCCCATTTCAGTATGCATGTGACCATCGCT
CCAGCTTCTACCGAACGAGCAACCTTGCCCCTGCGACTGAAGATTATTCC
CACCTTACATCGTTTCATTACATAGTCCATGGGACGGCGTTAGGCCCCCA
AACGTTATGGGTCGGGACACAGCAGTCGGCCAACGCGCGGGACCAGATAC
TTCCCAAAGGAAATATGAACAAAACGTTGATGTTTCCCGCAGGACCAGAG
TCACGCTTCCAACGCGTTGCTGAGATCAGAAAATGCACGCGTTCTGCCAG
ATAATGATGAACTTTTTGGCGCTTCACCTTGTCCGTAATTGCCAGGCTAC
GTACGATCTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAATGTGGCGG
ATTGTCGAACGGAATGGAACGACTTTACAGAGTGCCATCAAGAGTCACGG
AGAAGATCAACGGGCGACGCATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig123:31349..32222-

>mRNA_Ecto-sp13_S_contig123.1928.1 ID=mRNA_Ecto-sp13_S_contig123.1928.1|Name=mRNA_Ecto-sp13_S_contig123.1928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig123:31349..32222- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGACTCGGCACCCCCCGTTTGCGAAAATTGCAAACCCGGCAAGGC
AACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCAGGCGAGTG
CGGCTACGTACGATCTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAAT
GTGGCGGATTGTCGAACGGAATGGAACGACTTTACAGAGTGCCATCAAGA
GTCACGGAGAAGATCAACGGGCGACGCATAA
back to top