mRNA_Ecto-sp13_S_contig7981.19280.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7981.19280.1
Unique NamemRNA_Ecto-sp13_S_contig7981.19280.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7981.19280.1 vs. uniprot
Match: D7G1M6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M6_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.260e-39
Identity = 121/141 (85.82%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 GWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAE------EEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFNPFDDAENGGGDAXXXXXXXXDGYNPFADFMDGVR 405
            GWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAE      EEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AFNPFDDA NGG D         DGYNPFADFMDG+ 
Sbjct:  667 GWDMDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAEVMAALQEEERLYKEDLEAESDDSDASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAFNPFDDAGNGGADGDDAGDD--DGYNPFADFMDGME 805
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7981.19280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1M6_ECTSI1.260e-3985.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7981contigEcto-sp13_S_contig7981:3272..4833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score142.5
Seed ortholog evalue1.5e-31
Seed eggNOG ortholog2880.D7G1M6
Model size420
KEGG rclassRC02795
KEGG koko:K03015
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs28SCF@1,2QZ1Z@2759
Cds size411
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03019,ko03021,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.3414545-UTR-Ecto-sp13_S_contig7981:3271..32801681464069.3414545-UTR-Ecto-sp13_S_contig7981:3271..3280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7981 3272..3280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.3565745-CDS-Ecto-sp13_S_contig7981:3280..33941681464069.3565745-CDS-Ecto-sp13_S_contig7981:3280..3394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7981 3281..3394 +
1681464069.3655283-CDS-Ecto-sp13_S_contig7981:4105..42101681464069.3655283-CDS-Ecto-sp13_S_contig7981:4105..4210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7981 4106..4210 +
1681464069.3743029-CDS-Ecto-sp13_S_contig7981:4641..48331681464069.3743029-CDS-Ecto-sp13_S_contig7981:4641..4833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7981 4642..4833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7981.19280.1prot_Ecto-sp13_S_contig7981.19280.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7981 3281..4833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7981.19280.1

>prot_Ecto-sp13_S_contig7981.19280.1 ID=prot_Ecto-sp13_S_contig7981.19280.1|Name=mRNA_Ecto-sp13_S_contig7981.19280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MDEEEAPPGRGDAKFSWEVIRDNSIFTYRIDLVPAYAEEEERLYKEDLEA
ESDDSDASGDNDDSDEEEEEEDSDDEEEHTAAFTSSKKASSKKKAAFNPF
DDAENGGGDAGGDDAGDDDGYNPFADFMDGVRLTFL*
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mRNA from alignment at Ecto-sp13_S_contig7981:3272..4833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7981.19280.1 ID=mRNA_Ecto-sp13_S_contig7981.19280.1|Name=mRNA_Ecto-sp13_S_contig7981.19280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7981:3272..4833+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTGGGACATGGACGAGGAGGAAGCTCCTCCGGGGAGGGGAGACGCCAA
ATTTTCGTGGGAGGTCATCCGCGACAATTCCATCTTCACGTACCGCATCG
ATCTCGTCCCGGCCTACGCGGAGGTCATGGCGGCATTACAGGCAAGCCAG
CAATACGGCAGAATCCTGCAAGCATGGTTCATTGAATATGATTTTTCGAA
TGGGGCGAATAATAGCGTTGTTCGTGAGAGGGAGATCAAACATGCGGTAA
CCGAACCGGAAGTCGTGGCGGGAACGGTGCTTGCTTGGCAGCAATGTGCG
TACTTAGCCTGTACACGTTCTTCTCTTAAGTCTAGGAAGGTACTACTTTG
CAGCGCTAGCAGCGGTAAACACCTTGCCGTTGTTGTCGCTGAGGTTGTTC
CTGTCGTTGTTGTTGCCGTCGCCGTCGTTGCCGTTGCCGTTGTCGATGTC
GCTGTTGTCATCGTCGTTATTATCGTCGATTCATCGTCGTCTTTGTTGCT
GTTGTTGTTGTTGTTGTTGCTGCTGTTGTTGTTGCTGTTGTTGTCGTTGC
TGTTGCTGTTATTGCTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTG
TTGTTGTTGTTGTTGTCGTTGCTGTTGCTGTTGTTGCTGCTGTTGTTGTT
GTTGTCGTTGCTGTTGCTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGCTGTTGTTGTTGCTGTTGTTGTTGTTGTTGCTGTTGTTGTTG
CTGTTGCTGTTGCTGTTGATGTTGCTGTTGCTGTTGTTGTTGTTGTGGTC
CTCTTGATCTAACATACACAATCGGCCCCTGCAGGAGGAAGAACGCTTGT
ACAAGGAGGATTTAGAGGCCGAGAGCGACGACAGCGATGCGTCGGGCGAC
AACGATGACAGCGACGAGGAGGAAGAAGAGGAGGACTCGGTAAAATGAAG
TATCTGTTGGTGACAAGTTCACGTAGTGAAGGTATTTCGCTGTGAAGATT
GGCTTTGCATGATTTGGGGTGTTCGAGTGTTTGAATGGTTTATTATTGTG
GGCAGTACCGGCGACAACGTACATCGTACGGCGTAATCATTCCTCAGCTG
ACAGCATCTGAGGGCATAGGGCGTAAACGTACAGAAGAGGAGGGTTCGGT
TCGACAGCCGTTCGAACTAGTCTAAGCTGTTTGGATAGACTATTGGTGCT
TTGTAAAGTTCCTGACGGTTGGTTGTGTGTGTCTCCCGTAACAATGACTG
CTCAGCACTGACCTCATCGAAGATGCTACATGCGATGGGCTGGTTCCATG
TCCCAGCAGCCAATTGTAAGATGCAGCATCCGGTCGGCTGATCTTTTGAT
GCTCACTCGACAAAATATAGGACGATGAGGAGGAGCATACAGCGGCCTTC
ACAAGTTCAAAGAAGGCCAGCAGCAAGAAAAAGGCCGCATTCAATCCATT
CGATGACGCCGAAAACGGAGGAGGAGACGCAGGCGGGGACGATGCAGGAG
ACGACGACGGCTATAACCCGTTCGCAGACTTCATGGACGGGGTGAGGCTC
ACCTTCTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7981:3272..4833+

>mRNA_Ecto-sp13_S_contig7981.19280.1 ID=mRNA_Ecto-sp13_S_contig7981.19280.1|Name=mRNA_Ecto-sp13_S_contig7981.19280.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7981:3272..4833+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAGGAGGAAGCTCCTCCGGGGAGGGGAGACGCCAAATTTTCGTG
GGAGGTCATCCGCGACAATTCCATCTTCACGTACCGCATCGATCTCGTCC
CGGCCTACGCGGAGGAGGAAGAACGCTTGTACAAGGAGGATTTAGAGGCC
GAGAGCGACGACAGCGATGCGTCGGGCGACAACGATGACAGCGACGAGGA
GGAAGAAGAGGAGGACTCGGACGATGAGGAGGAGCATACAGCGGCCTTCA
CAAGTTCAAAGAAGGCCAGCAGCAAGAAAAAGGCCGCATTCAATCCATTC
GATGACGCCGAAAACGGAGGAGGAGACGCAGGCGGGGACGATGCAGGAGA
CGACGACGGCTATAACCCGTTCGCAGACTTCATGGACGGGGTGAGGCTCA
CCTTCTTGTGA
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