mRNA_Ecto-sp13_S_contig7976.19277.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7976.19277.1
Unique NamemRNA_Ecto-sp13_S_contig7976.19277.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7976.19277.1 vs. uniprot
Match: A0A6H5JGQ8_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ8_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 8.500e-73
Identity = 112/141 (79.43%), Postives = 116/141 (82.27%), Query Frame = 1 
Query:   88 MVGQLCRCHTLILXXXXXXXXXXXXXXXXEHGRYTSPLETSESPPSIAMDD-GAAAGVGQRETNRCSDLDQSVFSTGMQCGPPLSPPCFQFNSTECLGNAGIYVFDSECSLLETRELRVPDEGQKVSWAWMDHHYVEWVLR 507
            MVGQLCRCHTL+L                EHGRY+SPLET ESPPS+A+DD GAAAGVG  ETNRCSDLDQS FS GMQCGPPLSPPCFQ NSTECLGNAGIYVFDSECSLLET ELRVPDE QKVSWAWMDHHYVEWVLR
Sbjct:    1 MVGQLCRCHTLVLLLLNAAAASEGGMQRQEHGRYSSPLETLESPPSVALDDDGAAAGVGHPETNRCSDLDQSAFSIGMQCGPPLSPPCFQCNSTECLGNAGIYVFDSECSLLETSELRVPDEEQKVSWAWMDHHYVEWVLR 141
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BLAST of mRNA_Ecto-sp13_S_contig7976.19277.1 vs. uniprot
Match: A0A6H5KKV6_9PHAE (GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.210e-31
Identity = 68/128 (53.12%), Postives = 82/128 (64.06%), Query Frame = 1 
Query:   88 MVGQLCRCHTLILXXXXXXXXXXXXXXXXEHGRYTSPLETSE--SPPSIAMDDGAAAGVGQRETNRCSDLDQSVFSTGMQCGPPLSPPCFQFNSTECLGNAGIYVFDSECSLLETRELRVPDEGQKVS 465
            MVG LC    ++L                +HGR+   L+T    SPPS+A++ GA   VG+ + NRCSDLDQSVFSTGMQCGPPLSPPCFQ  STECL N GIYVFD ECSL ++ EL   D+G + S
Sbjct:    1 MVGLLCCSLAILLTAGAASSAVGTKQQHQQHGRH---LQTGSLASPPSLAVE-GADPWVGRPQANRCSDLDQSVFSTGMQCGPPLSPPCFQSYSTECLSNGGIYVFDGECSLQDSSELLAADQGYEFS 124
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BLAST of mRNA_Ecto-sp13_S_contig7976.19277.1 vs. uniprot
Match: D7G4H1_ECTSI (Glycosyltransferase, family GT47 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4H1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.740e-13
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  373 LGNAGIYVFDSECSLLETRELRVPDEGQKVSWAWMDHHYVEWVLR 507
            +GNAGIYVFDSECSLLET +LR  DEG+KVS   M HHYVEWVLR
Sbjct:    1 MGNAGIYVFDSECSLLETSKLRAQDEGKKVSSTRMHHHYVEWVLR 45
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7976.19277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGQ8_9PHAE8.500e-7379.43GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KKV6_9PHAE1.210e-3153.13GT47 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G4H1_ECTSI6.740e-1377.78Glycosyltransferase, family GT47 n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7976contigEcto-sp13_S_contig7976:5333..5841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score75.9
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D7G4H1
Preferred nameEXTL1
Model size511
KEGG koko:K02366,ko:K02368,ko:K21988
KEGG TC1.A.17.4
KEGG ReactionR05935,R05936,R10138,R10139
KEGG Pathwayko00534,ko01100,map00534,map01100
KEGG ModuleM00059
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000271,GO:0000902,GO:0000904,GO:0001501,GO:0001503,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006022,GO:0006023,GO:0006024,GO:0006029,GO:0006040,GO:0006044,GO:0006082,GO:0006790,GO:0006807,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007369,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007492,GO:0007498,GO:0008150,GO:0008152,GO:0008194,GO:0008354,GO:0008375,GO:0008589,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010646,GO:0010647,GO:0012505,GO:0015012,GO:0015014,GO:0015020,GO:0016020,GO:0016021,GO:0016043,GO:0016051,GO:0016192,GO:0016477,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019899,GO:0019953,GO:0021537,GO:0021772,GO:0021988,GO:0022008,GO:0022412,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030111,GO:0030154,GO:0030166,GO:0030176,GO:0030177,GO:0030182,GO:0030201,GO:0030202,GO:0030203,GO:0030210,GO:0030900,GO:0030968,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0033692,GO:0034620,GO:0034637,GO:0034645,GO:0034976,GO:0035295,GO:0035966,GO:0035967,GO:0036465,GO:0036498,GO:0040011,GO:0042175,GO:0042221,GO:0042328,GO:0042330,GO:0042802,GO:0042803,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045880,GO:0046982,GO:0046983,GO:0048311,GO:0048312,GO:0048468,GO:0048488,GO:0048513,GO:0048518,GO:0048522,GO:0048565,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048706,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050508,GO:0050509,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055123,GO:0060322,GO:0060465,GO:0060828,GO:0061564,GO:0065007,GO:0070887,GO:0071310,GO:0071704,GO:0071840,GO:0072498,GO:0090092,GO:0090097,GO:0090098,GO:0090100,GO:0090263,GO:0097485,GO:0098588,GO:0098657,GO:0098791,GO:0098827,GO:0099003,GO:0099504,GO:0120036,GO:0120039,GO:1901071,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903510
Exons1
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
EC2.4.1.224,2.4.1.225
Cds size507
COG Functional cat.S
CAZyGT47,GT64
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.187427-CDS-Ecto-sp13_S_contig7976:5332..58391681464069.187427-CDS-Ecto-sp13_S_contig7976:5332..5839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7976 5333..5839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7976.19277.1prot_Ecto-sp13_S_contig7976.19277.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7976 5333..5839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7976.19277.1

>prot_Ecto-sp13_S_contig7976.19277.1 ID=prot_Ecto-sp13_S_contig7976.19277.1|Name=mRNA_Ecto-sp13_S_contig7976.19277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=169bp
LQQNPPPDSTAQIDSRHTRKRTAALPHVEMVGQLCRCHTLILLLLSAAAA
SDGGTQQQEHGRYTSPLETSESPPSIAMDDGAAAGVGQRETNRCSDLDQS
VFSTGMQCGPPLSPPCFQFNSTECLGNAGIYVFDSECSLLETRELRVPDE
GQKVSWAWMDHHYVEWVLR
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mRNA from alignment at Ecto-sp13_S_contig7976:5333..5841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7976.19277.1 ID=mRNA_Ecto-sp13_S_contig7976.19277.1|Name=mRNA_Ecto-sp13_S_contig7976.19277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7976:5333..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACAGCAAAACCCGCCACCGGACAGCACAGCACAGATAGACAGCCGACA
CACGAGGAAGCGAACTGCCGCACTCCCCCACGTAGAGATGGTTGGACAGT
TGTGCCGCTGCCACACCCTCATCCTACTCCTCCTCAGCGCCGCCGCTGCT
TCCGACGGTGGTACGCAACAGCAAGAACACGGCCGTTACACTAGTCCACT
TGAAACTTCGGAGTCTCCACCAAGCATTGCAATGGATGATGGCGCTGCTG
CTGGGGTGGGTCAGCGAGAGACCAACCGGTGTTCGGATCTAGATCAGTCC
GTCTTCTCGACAGGCATGCAATGCGGGCCACCTCTGTCACCACCTTGCTT
TCAATTCAATTCTACAGAGTGTTTAGGGAATGCCGGGATATATGTTTTCG
ATTCGGAGTGTTCGCTTTTGGAGACTAGGGAGTTGCGCGTTCCTGATGAG
GGACAAAAAGTTAGCTGGGCTTGGATGGACCATCACTACGTCGAATGGGT
TCTACGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7976:5333..5841+

>mRNA_Ecto-sp13_S_contig7976.19277.1 ID=mRNA_Ecto-sp13_S_contig7976.19277.1|Name=mRNA_Ecto-sp13_S_contig7976.19277.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=507bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7976:5333..5841+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTACAGCAAAACCCGCCACCGGACAGCACAGCACAGATAGACAGCCGACA
CACGAGGAAGCGAACTGCCGCACTCCCCCACGTAGAGATGGTTGGACAGT
TGTGCCGCTGCCACACCCTCATCCTACTCCTCCTCAGCGCCGCCGCTGCT
TCCGACGGTGGTACGCAACAGCAAGAACACGGCCGTTACACTAGTCCACT
TGAAACTTCGGAGTCTCCACCAAGCATTGCAATGGATGATGGCGCTGCTG
CTGGGGTGGGTCAGCGAGAGACCAACCGGTGTTCGGATCTAGATCAGTCC
GTCTTCTCGACAGGCATGCAATGCGGGCCACCTCTGTCACCACCTTGCTT
TCAATTCAATTCTACAGAGTGTTTAGGGAATGCCGGGATATATGTTTTCG
ATTCGGAGTGTTCGCTTTTGGAGACTAGGGAGTTGCGCGTTCCTGATGAG
GGACAAAAAGTTAGCTGGGCTTGGATGGACCATCACTACGTCGAATGGGT
TCTACGA
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