prot_Ecto-sp13_S_contig7975.19275.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7975.19275.1
Unique Nameprot_Ecto-sp13_S_contig7975.19275.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length222
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7975.19275.1 vs. uniprot
Match: D7FUF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF4_ECTSI)

HSP 1 Score: 379 bits (973), Expect = 2.530e-131
Identity = 199/220 (90.45%), Postives = 207/220 (94.09%), Query Frame = 0 
Query:    1 MSKGVFPAAFFTFIGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQILTKAQLKKAAKEAAKKAAAGIEAASGGKMLYLEKGKDVVTEHMHVALGVVVXXXXXLALVNGPGVWPRSLQQGSFPACFMTASGVLAYNSFVRQARESHGGSLDDFFPAFAAVLAATLLASRGSAMQAS 220
            MSKGVFPAAFFTF+GSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQ LTKAQLKKAAK+AAKKAAAGI AA GGKMLYLEKGKDVVTE +HVALGV+V     LALVNGPGVWPR+LQQG+FPACFM ASGVLAYNSF+RQARES GGSLDDFFPAFAA LAATLLA +GSAMQAS
Sbjct:   45 MSKGVFPAAFFTFVGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQNLTKAQLKKAAKDAAKKAAAGIGAAGGGKMLYLEKGKDVVTEQLHVALGVLVVVVLVLALVNGPGVWPRNLQQGAFPACFMIASGVLAYNSFLRQARESDGGSLDDFFPAFAAALAATLLARKGSAMQAS 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7975.19275.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF4_ECTSI2.530e-13190.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..132
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 217..221
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 153..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 133..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 197..216
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 183..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..182
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score: 5.0
NoneNo IPR availableTMHMMTMhelixcoord: 61..83
NoneNo IPR availableTMHMMTMhelixcoord: 197..216
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 135..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7975contigEcto-sp13_S_contig7975:1721..5911 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7975.19275.1mRNA_Ecto-sp13_S_contig7975.19275.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7975 873..5974 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7975.19275.1 ID=prot_Ecto-sp13_S_contig7975.19275.1|Name=mRNA_Ecto-sp13_S_contig7975.19275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MSKGVFPAAFFTFIGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVA
YRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQILTKAQLKKA
AKEAAKKAAAGIEAASGGKMLYLEKGKDVVTEHMHVALGVVVVVVLVLAL
VNGPGVWPRSLQQGSFPACFMTASGVLAYNSFVRQARESHGGSLDDFFPA
FAAVLAATLLASRGSAMQASV*
back to top