mRNA_Ecto-sp13_S_contig7975.19275.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7975.19275.1
Unique NamemRNA_Ecto-sp13_S_contig7975.19275.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7975.19275.1 vs. uniprot
Match: D7FUF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF4_ECTSI)

HSP 1 Score: 402 bits (1034), Expect = 9.270e-136
Identity = 211/241 (87.55%), Postives = 222/241 (92.12%), Query Frame = 1 
Query:    1 LIVHFASCQTKSRGEPLQPANMSKGVFPAAFFTFIGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQILTKAQLKKAAKEAAKKAAAGIEAASGGKMLYLEKGKDVVTEHMHVALGVVVXXXXXLALVNGPGVWPRSLQQGSFPACFMTASGVLAYNSFVRQARESHGGSLDDFFPAFAAVLAATLLASRGSAMQAS 723
            L + + +  TKSRGEPLQPA MSKGVFPAAFFTF+GSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQ LTKAQLKKAAK+AAKKAAAGI AA GGKMLYLEKGKDVVTE +HVALGV+V     LALVNGPGVWPR+LQQG+FPACFM ASGVLAYNSF+RQARES GGSLDDFFPAFAA LAATLLA +GSAMQAS
Sbjct:   24 LFIIYRAFVTKSRGEPLQPACMSKGVFPAAFFTFVGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVAYRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQNLTKAQLKKAAKDAAKKAAAGIGAAGGGKMLYLEKGKDVVTEQLHVALGVLVVVVLVLALVNGPGVWPRNLQQGAFPACFMIASGVLAYNSFLRQARESDGGSLDDFFPAFAAALAATLLARKGSAMQAS 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7975.19275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF4_ECTSI9.270e-13687.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7975contigEcto-sp13_S_contig7975:873..5974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1577
Hectar predicted targeting categorysignal peptide
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-03_000410.1
Cds size666
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7975.19275.1prot_Ecto-sp13_S_contig7975.19275.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7975 1721..5911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.0971377-UTR-Ecto-sp13_S_contig7975:872..17201681464069.0971377-UTR-Ecto-sp13_S_contig7975:872..1720Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7975 873..1720 -
1681464069.1600072-UTR-Ecto-sp13_S_contig7975:5911..59741681464069.1600072-UTR-Ecto-sp13_S_contig7975:5911..5974Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7975 5912..5974 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.1068525-CDS-Ecto-sp13_S_contig7975:1720..19061681464069.1068525-CDS-Ecto-sp13_S_contig7975:1720..1906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 1721..1906 -
1681464069.1159515-CDS-Ecto-sp13_S_contig7975:2479..25581681464069.1159515-CDS-Ecto-sp13_S_contig7975:2479..2558Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 2480..2558 -
1681464069.1250656-CDS-Ecto-sp13_S_contig7975:3004..31231681464069.1250656-CDS-Ecto-sp13_S_contig7975:3004..3123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 3005..3123 -
1681464069.134019-CDS-Ecto-sp13_S_contig7975:3733..38531681464069.134019-CDS-Ecto-sp13_S_contig7975:3733..3853Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 3734..3853 -
1681464069.1429849-CDS-Ecto-sp13_S_contig7975:4951..50481681464069.1429849-CDS-Ecto-sp13_S_contig7975:4951..5048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 4952..5048 -
1681464069.1512566-CDS-Ecto-sp13_S_contig7975:5846..59111681464069.1512566-CDS-Ecto-sp13_S_contig7975:5846..5911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7975 5847..5911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7975.19275.1

>prot_Ecto-sp13_S_contig7975.19275.1 ID=prot_Ecto-sp13_S_contig7975.19275.1|Name=mRNA_Ecto-sp13_S_contig7975.19275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
MSKGVFPAAFFTFIGSLACHEMLLDMMGYPGGLTAWAPAVLAVVACSWVA
YRGQLAASGGELGLSVIAPVVALAALTISWLVADEVEQPQILTKAQLKKA
AKEAAKKAAAGIEAASGGKMLYLEKGKDVVTEHMHVALGVVVVVVLVLAL
VNGPGVWPRSLQQGSFPACFMTASGVLAYNSFVRQARESHGGSLDDFFPA
FAAVLAATLLASRGSAMQASV*
back to top

mRNA from alignment at Ecto-sp13_S_contig7975:873..5974-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7975.19275.1 ID=mRNA_Ecto-sp13_S_contig7975.19275.1|Name=mRNA_Ecto-sp13_S_contig7975.19275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7975:873..5974- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCATCGTGCATTTTGCGTCATGTCAGACCAAGTCCCGCGGCGAGCCCCT
CCAACCGGCGAACATGTCTAAGGGGGTGTTTCCTGCGGCATTCTTCACCT
TCATCGGATCCCTGGCCTGCCACGAGATGTGAGACTCGAACGCAGCTACT
TACGCGCATCTACATGCTTGGTGAAGGTAGAAGGTTTTGACTCGGGGGAG
GGGGGAGGTATTTTTTTTTCTTCTACCTGTTGCAGGTATGCAAGCTGTTG
TGTTGTAAAAATGGTATAATAGCCGAGGGATTCGTGCTTCGTTACACTTG
AAGTATGTATGTGATGTCTTCGAGGCGAAAGGGGCGCTCTGTTGTTGTGC
TGCAGCGGCACGCGGTGGTTCTTGCAGACATCGTAAGTACAGCAGTAGTA
CAGCAGTAGTGCGGCGAGGTGGAAGAGAAGGCAGTGGTTCCGAAGCAGTG
TTGACTACTCGCCAGTCTACCTGCCTTCTAGTTGTACCGGCGGGGAGAGG
TAAGGCAATATGGGCGTTATCTTGGTGGATGGAGTGGGAAAGCGGGGGAA
CAATGAACGCCAGTGTTAACGTGTGGCATAGGCTTACTCTTATCATTGCA
TGCCCCGTGTGGTTTCGCCTGATAGCTTTCACGGGAACCAGTGCGATCAC
CGTGTACTGTCCTAGGCTTGTGACCGCATCTTGGTTTTGCGTTTCGGCAT
GAACAAACATGTGGGAACATCTTATGCCTCCCTTGAACTCCCACCCCTGC
TGTTTCTCCGCCACTCAAGCCACACACGCTCGCGCCGAAAAATCTCCGTG
CCCCTCTCCCCCCGTCGCCGCGCCGCCGAAAAGTATCATTTTCTCGGTGT
ATCAATGCGCTCGTGCCACCTAACGCCCCCCCTGTCCTTCTCGCCACCAA
CCAATAATTTCTCTGCGTTTCTCAAGGTTGCTCGACATGATGGGCTACCC
CGGGGGACTGACGGCCTGGGCTCCTGCGGTGCTGGCAGTGGTGGCTTGCT
CCTGGGTGGCCTACCGCGGGCAGGTACACCCTACTGATCCTTGTACTACT
TAGAGTTTTTTTTTGGTGTTTTCTTAGTGTTGTGTTGGCTTTTGATTGGG
GCACATGTGTGTTTTCGTGTTCTGCCAGGGTTGCGTTGTGTTTCTCTTGG
GGCATCCTTTCTATTTTGCATATTTAGGTGAGACATGCACTGGATGTCCT
CGGGTCCGTCGTTCATCTTTCCTACTCACCGAGGATGTACCCACGTTCCC
AGGGGCCCGGTTATGGGGACATGTCCATGCGCATCACATCTCGTATGTTG
TTTGTTTGACATGAAACGGGAGGCGAACATTGCCCGAGCGCTCACCCAGG
TGTACCTCACCCGGGACACACTCTGTAGTCTATGTTGGCTGCTGTACTCG
GGTGTACTAGTGCATGCACGCCTATTTACATCGCACTTGTATTCATACTG
ACTTGCGGGTTCATGCTGCCAGTCGTTGATATCGTATGCTGCTGCCGCAA
GTCGTGGCGGCGTGAGAGGGTGCTTTCCCGGCCGTCTGTAGACTGCGCCG
CGCTGCCGTGCTCGCCAACCTGCTGCGGCTGGCACGACTCTGAGTCACGC
GAGGCTTGGCCCTAGCTATACATTTTTTTCGCTACTCTCCTGGTGACCAA
TTGGAGACACTTCTGCTGTTGTCGCAACAATGGAATTTCTTGTCATGAAG
ATTATAACACCACCATCCCCATTACAGTAACAGCAGTACAGTACAGTGCT
CATGCGTGTTCCAGTCGCGTATACGATTTAAGGGAGGGTCGTGTTAGGTC
AGCGAAACCCCTCTGAAAACGTGCCCATCTCTTGTAACTTGTATTGGTTT
GCATGCTGTCTCTCAAGACCGGGACAAGCGGCTCCACCTTCTTCAATTCC
TCAATTGCTTCCTGCCAGGCAGTCAGTCCCTCCACATGTCCTCGTCGCTT
TGTCTTGTAAATGGTGTCTTGTATCCCTTCATTTATTTCTCGTAAATGGT
CCCTCTTGAATTTCTGAAGTGTTCCCTTTCAAAAACGTTTAACCGCAACG
CACTCCCCACCCGTTTCACGTGTGTGCGACATGACATGGTTTTACATGGT
ATGACGTCACGTGTACTGTAGCTGGCGGCATCGGGGGGCGAGCTGGGCTT
GTCTGTCATCGCTCCCGTGGTGGCGCTTGCTGCTCTCACCATTTCTTGGC
TCGTCGCCGACGAGGTGGAACAGCCGCAAATCCTCACCAAGGTGCGTCAC
GCGTCGTATTTCAAAGTCGTCACTGTTGTTGTTGTTGTTGTTGTTATTTT
TTATTGTTGTTGTTGTTACTGTTGCTGTTGTTGTTTTGGTTGTTGCTGTT
GCTGTTGCTGTAGTTGTTGTTATGGATGTTGTCGTCGTCTTGGATGCTCC
TGTAATTGGCGGTGCCGTCACGGTTGTTGCCGTTGAGGTTGTGAGGGTGT
CGATACTGCCTCTGTTGTTGTCAATTCTACCAACAACACCGAACTCACCC
TAGTCCTAGGACACACATGAGGTGGTACGCTGGACACAAGACATCAGTTC
AAAACAACAGCGTCGACGTCGACGATGACAAGCAACAACAAAGTCAGTTG
TGGCCTCTCTACATGTAGACAGGTAGGCTGCGTATGTGTCCGCCCGATTC
ACGCGCCCTATTGTATCGCGGCCGCCCGTCCTGTTGAAAGCATTCGGCGC
CATGGTTTTCCTGTCGGCGCCAACAGGTTGCGCCAGCTGAATATCAGTCA
TCCCCCATACTGTACTAACACAACAGACCATTCGCCTATGGTATTTGCTA
CAACCGTCGTCGCCGCCTGCACCGTGGTGTGTGGGTATCGCTGCTCTTCA
GGCGCAGCTAAAGAAGGCCGCGAAAGAGGCTGCTAAGAAGGCTGCCGCGG
GGATAGAGGCTGCCAGCGGCGGCAAGATGCTTTACCTGGAGAAGGGCAAG
GACGTCGTCACCGAGCATATGTGAGTGAGCCAATCACATCACGAGAGAGA
GAGAGAGCCAATCACACCACGAGGAACGGCTTGTGTGTTCAACACGTAGT
GTTCCAATGCATAAATCCATTAAGAACATGAACGGCGTCTATCGTAAGCA
ACACACGGGCAACATAAAACTCACGCATGTACGTTGTTTTCAGATGGACC
GCAGCATTTTTTAGTCAAGTAAAGGGCCCTTTTGGTGTTTGTGTGCAAGA
GCGTTGACATAGACTACCCGAGCTGCACCGTCGTCGCTTCACCATTGCCA
TTGCGATTGCGATTGCGATTGCGATTGCGATTACGTTCTTCTCAGTAACA
AAAAAACGACCACACCAAAGACACCAACATTAACAAGAACAAGAGAGGCA
TGAGGACAGACAGCCCATGTGATTTGTTCACTGCTTCCTCTGGACTACTC
CCGTTCTCTACCGCAGGCACGTGGCTCTCGGCGTAGTCGTCGTCGTGGTG
CTGGTTCTGGCACTGGTGAACGGACCGGGCGTCTGGCCTCGCAGCGTGAG
TGATTGTTCCATCTCATCGCACGTATTTGTGACGAACTGTTGTTAAAGTT
GTTGGACACGCTATCCGGCAAGCTGGGGGGTATTTTTTTGTCTCGTGCTT
TCTTGCGTCGGACTCGTTACTATCGTAGTAGAAAGATTCGCTATTTAGTT
CGATTCCGTTGTGTCTTCCTCTTTTTTTTACATGTTATTTTTCTGACCTG
GTTATCCCACAGTATTGTTGAAACCTGTCGCCGTTGTTGTTGTTTTTGTT
ATTGCTGCTGTTGCTATTGCTGTGATAATGGTTTTTGATTTGTTTCAAGT
TACTGTTGGTGGTGGTATAGATCGTCATGTCCGTGGATGTAGCGGATGTA
ACCACACCAGGGGGGCATCGCAGATGGTCGAAAATATGGATTGGATGCAA
AGCCTGCTCGCACAGGACATCTCGCTTATCGATTCATGCACCCGTTTAAT
TGTAACTCCCTTGAATGATCTTGTTCCTATCTTGACTTTTTTCGGGACCG
TTTGTCGCTTTCCCGCCTCATCGAAATTCTTCTTGCTTGGGGCGTATTTT
TTTTCGGCGGCGAAACAGCTGCAGCAGGGGTCCTTCCCCGCCTGCTTCAT
GACCGCGTCCGGGGTGTTGGCCTACAACTCCTTCGTTCGCCAAGCCCGAG
AGTCTCACGGAGGCAGCCTGGACGACTTCTTCCCCGCCTTCGCTGCTGTC
CTTGCGGCCACCCTCCTAGCCAGCAGGGGGTCCGCGATGCAAGCATCGGT
TTAGTTTTTTTTTCAGAGAGATATGAAGACTTCGTGCTGTATATTTTGTT
TTTCGTCCATGCAACAAAAAGCCGGCTACGCAGGAGCCACGTCATGTATA
TTGCTTCTTGTTTGTGTTGAAGCGACGGAGATTCCTGGAAATATTATCCC
TCATGGGTAAAGAGTCCAGGGTTAGTCTGCTTCATTCCTCGGTGGAAGCG
GTGCTCGATTTGCTAGCAAGGAACGATCAGTGGCAAGTATCTTTCCTCCA
TCTCCTACAAGTGCTATGTTTTGGTCGCTTTTGTGGTCTGGGAATTGGCG
GTTTGCTGTGGATTTTCTACACGTTGTAAGCACAAGGGTCGCTGTAAGTT
AGTTTGCCAGGAACCATCGCGGGCTTAGTCTTGAGTTGTAGGCTGTTTAT
CGAAGCTCTTGTCATGACAGACCAAAAGGTTGCGGCTGATGAGCGTGTTA
CGATGCAAACACCAGCCTACTCCGGACTTGAAATGGCAATGATTTCTGCC
AAGAGGGGTGTTTTGGTCACCCTTGTCAAATCTGAATACCCTATCCTATC
CTCGTGTGTCCAGTCAAGAAGGCGAACAGCAAGCAAACCTAGCGCGGTCT
GTCTTCTTACCATTTGGTGGGCGAGTCGTCCTTTCCTTCACCGTGCCGTT
GACGATATGGATATGGGAACAGTCACCTCGTTCATGTTCTATTGTGTTTG
GTTGGTTGACGGTGGTGGACCGGACAGATGTACTCTCTCGAGGTTTTGTT
CAGGTCGACGCCATCCCGTGGCGGCCATGACACAAGAGACTACGGTTGCC
TGGACGCAACGTCGACGTCCTCTCTTGTGAGCTATGTGGTGGGCGGGCAC
CA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7975:873..5974-

>mRNA_Ecto-sp13_S_contig7975.19275.1 ID=mRNA_Ecto-sp13_S_contig7975.19275.1|Name=mRNA_Ecto-sp13_S_contig7975.19275.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7975:873..5974- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTAAGGGGGTGTTTCCTGCGGCATTCTTCACCTTCATCGGATCCCT
GGCCTGCCACGAGATGTTGCTCGACATGATGGGCTACCCCGGGGGACTGA
CGGCCTGGGCTCCTGCGGTGCTGGCAGTGGTGGCTTGCTCCTGGGTGGCC
TACCGCGGGCAGCTGGCGGCATCGGGGGGCGAGCTGGGCTTGTCTGTCAT
CGCTCCCGTGGTGGCGCTTGCTGCTCTCACCATTTCTTGGCTCGTCGCCG
ACGAGGTGGAACAGCCGCAAATCCTCACCAAGGCGCAGCTAAAGAAGGCC
GCGAAAGAGGCTGCTAAGAAGGCTGCCGCGGGGATAGAGGCTGCCAGCGG
CGGCAAGATGCTTTACCTGGAGAAGGGCAAGGACGTCGTCACCGAGCATA
TGCACGTGGCTCTCGGCGTAGTCGTCGTCGTGGTGCTGGTTCTGGCACTG
GTGAACGGACCGGGCGTCTGGCCTCGCAGCCTGCAGCAGGGGTCCTTCCC
CGCCTGCTTCATGACCGCGTCCGGGGTGTTGGCCTACAACTCCTTCGTTC
GCCAAGCCCGAGAGTCTCACGGAGGCAGCCTGGACGACTTCTTCCCCGCC
TTCGCTGCTGTCCTTGCGGCCACCCTCCTAGCCAGCAGGGGGTCCGCGAT
GCAAGCATCGGTTTAG
back to top