prot_Ecto-sp13_S_contig79730.19274.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig79730.19274.1
Unique Nameprot_Ecto-sp13_S_contig79730.19274.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length87
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79730.19274.1 vs. uniprot
Match: D8LD52_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD52_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.410e-48
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0 
Query:    1 MMTFTRVLVALMLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAVAPRPRDQQHAGPLLMGWGDALGKAFANEDMAPKKNPGLKN 87
            M TFTR+LVAL+LSVSSASAFVPCPSALTKSNHRAIHDPAPAATTA APRPR QQHAGPLLMGWGDALGKAFANEDMAP+KNPGLKN
Sbjct:    1 MTTFTRILVALVLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAAAPRPRYQQHAGPLLMGWGDALGKAFANEDMAPQKNPGLKN 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79730.19274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD52_ECTSI1.410e-4893.102Fe-2S ferredoxin-type domain-containing protein n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..87
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.893
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79730contigEcto-sp13_S_contig79730:3..263 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79730.19274.1mRNA_Ecto-sp13_S_contig79730.19274.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig79730 3..263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig79730.19274.1 ID=prot_Ecto-sp13_S_contig79730.19274.1|Name=mRNA_Ecto-sp13_S_contig79730.19274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MMTFTRVLVALMLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAVAPR
PRDQQHAGPLLMGWGDALGKAFANEDMAPKKNPGLKN
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