mRNA_Ecto-sp13_S_contig79730.19274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79730.19274.1
Unique NamemRNA_Ecto-sp13_S_contig79730.19274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig79730.19274.1 vs. uniprot
Match: D8LD52_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD52_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.410e-48
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 1 
Query:    1 MMTFTRVLVALMLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAVAPRPRDQQHAGPLLMGWGDALGKAFANEDMAPKKNPGLKN 261
            M TFTR+LVAL+LSVSSASAFVPCPSALTKSNHRAIHDPAPAATTA APRPR QQHAGPLLMGWGDALGKAFANEDMAP+KNPGLKN
Sbjct:    1 MTTFTRILVALVLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAAAPRPRYQQHAGPLLMGWGDALGKAFANEDMAPQKNPGLKN 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79730.19274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD52_ECTSI1.410e-4893.102Fe-2S ferredoxin-type domain-containing protein n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79730contigEcto-sp13_S_contig79730:3..263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score163.7
Seed ortholog evalue3.9e-38
Seed eggNOG ortholog2880.D8LD52
Model size261
Hectar predicted targeting categorychloroplast
Exons1
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2EAS1@1,2SGYY@2759
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-11_000490.1
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.0700097-CDS-Ecto-sp13_S_contig79730:2..2631681464069.0700097-CDS-Ecto-sp13_S_contig79730:2..263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79730 3..263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79730.19274.1prot_Ecto-sp13_S_contig79730.19274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79730 3..263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79730.19274.1

>prot_Ecto-sp13_S_contig79730.19274.1 ID=prot_Ecto-sp13_S_contig79730.19274.1|Name=mRNA_Ecto-sp13_S_contig79730.19274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MMTFTRVLVALMLSVSSASAFVPCPSALTKSNHRAIHDPAPAATTAVAPR
PRDQQHAGPLLMGWGDALGKAFANEDMAPKKNPGLKN
back to top

mRNA from alignment at Ecto-sp13_S_contig79730:3..263-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79730.19274.1 ID=mRNA_Ecto-sp13_S_contig79730.19274.1|Name=mRNA_Ecto-sp13_S_contig79730.19274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79730:3..263- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACATTTACCCGTGTTCTAGTCGCTCTAATGTTGAGCGTGTCCTC
CGCGAGTGCTTTCGTACCCTGCCCGTCTGCGCTGACCAAGTCGAACCACC
GAGCAATCCATGATCCGGCTCCGGCAGCAACAACAGCAGTAGCACCGCGA
CCTCGGGATCAGCAGCACGCGGGCCCGCTCCTCATGGGCTGGGGCGACGC
ATTAGGGAAAGCATTCGCGAACGAGGACATGGCCCCCAAGAAGAATCCTG
GTCTTAAGAAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79730:3..263-

>mRNA_Ecto-sp13_S_contig79730.19274.1 ID=mRNA_Ecto-sp13_S_contig79730.19274.1|Name=mRNA_Ecto-sp13_S_contig79730.19274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79730:3..263- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACATTTACCCGTGTTCTAGTCGCTCTAATGTTGAGCGTGTCCTC
CGCGAGTGCTTTCGTACCCTGCCCGTCTGCGCTGACCAAGTCGAACCACC
GAGCAATCCATGATCCGGCTCCGGCAGCAACAACAGCAGTAGCACCGCGA
CCTCGGGATCAGCAGCACGCGGGCCCGCTCCTCATGGGCTGGGGCGACGC
ATTAGGGAAAGCATTCGCGAACGAGGACATGGCCCCCAAGAAGAATCCTG
GTCTTAAGAAC
back to top