mRNA_Ecto-sp13_S_contig7970.19270.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7970.19270.1
Unique NamemRNA_Ecto-sp13_S_contig7970.19270.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7970.19270.1 vs. uniprot
Match: D7FT33_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT33_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.410e-5
Identity = 40/77 (51.95%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:  286 ASGTCPLFPRRSPIRRFSAICKILRLRYPILRIFSDMAT-----CAALSLSSSHTRWRPLSCHSADSTLHCLPAPSV 501
            + G    F RRSP RRFS ICK + LR P    FSD         A LS S   TR R  S H ADSTLHCL APSV
Sbjct:  506 SEGFVRFFRRRSPFRRFSDICKKI-LRLPA---FSDSPLFRPRHLAQLSRSLPCTRARAPSSHPADSTLHCLLAPSV 578
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7970.19270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT33_ECTSI1.410e-551.95Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7970contigEcto-sp13_S_contig7970:4551..5110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size560
Hectar predicted targeting categoryother localisation
Exons1
Cds size540
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464068.8810093-UTR-Ecto-sp13_S_contig7970:4550..45701681464068.8810093-UTR-Ecto-sp13_S_contig7970:4550..4570Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7970 4551..4570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464068.8941147-CDS-Ecto-sp13_S_contig7970:4570..51101681464068.8941147-CDS-Ecto-sp13_S_contig7970:4570..5110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7970 4571..5110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7970.19270.1prot_Ecto-sp13_S_contig7970.19270.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7970 4571..5110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7970.19270.1

>prot_Ecto-sp13_S_contig7970.19270.1 ID=prot_Ecto-sp13_S_contig7970.19270.1|Name=mRNA_Ecto-sp13_S_contig7970.19270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MLEGRIVIPTGLLSGRPDASASFSDHTWAVVLSICPLSDWISRTPLRLFP
LQEVHCSAASLFVWISRTPSHEISAIGVYLTPVTIKYGRVRDLSAFSAAF
SNPPLFCYLQNSPLALSDSPHFFRHGNLRGSLALFLAHALAPPLLSLRRQ
HSPLPTSTLRLSLKRIHFLFRRGALHYSSV
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mRNA from alignment at Ecto-sp13_S_contig7970:4551..5110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7970.19270.1 ID=mRNA_Ecto-sp13_S_contig7970.19270.1|Name=mRNA_Ecto-sp13_S_contig7970.19270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=560bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7970:4551..5110+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGCTTACTTTAAATTTCATGCTCGAAGGCCGGATTGTAATTCCAACT
GGACTCCTCTCAGGCAGACCGGATGCTTCCGCTTCTTTTTCCGATCACAC
CTGGGCTGTCGTTCTGTCCATTTGCCCGCTGTCTGACTGGATCTCCCGAA
CTCCTCTACGGCTCTTCCCGTTACAAGAGGTCCATTGCTCTGCCGCTTCG
CTCTTTGTCTGGATCTCACGCACTCCTTCACACGAGATATCTGCAATCGG
TGTGTATCTCACACCTGTGACCATCAAGTACGGACGCGTCAGGGACTTGT
CCGCTTTTTCCGCGGCGTTCTCCAATCCGCCGCTTTTCTGCTATCTGCAA
AATTCTCCGCTTGCGTTATCCGATTCTCCGCATTTTTTCCGACATGGCAA
CTTGCGCGGCTCTCTCGCTCTCTTCCTCGCACACGCGCTGGCGCCCCCTC
TCCTGTCACTCCGCCGACAGCACTCTCCACTGCCTACCAGCACCCTCCGT
CTAAGTTTGAAACGTATACATTTTCTGTTTCGTCGAGGAGCTCTCCACTA
TTCAAGCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7970:4551..5110+

>mRNA_Ecto-sp13_S_contig7970.19270.1 ID=mRNA_Ecto-sp13_S_contig7970.19270.1|Name=mRNA_Ecto-sp13_S_contig7970.19270.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7970:4551..5110+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGAAGGCCGGATTGTAATTCCAACTGGACTCCTCTCAGGCAGACC
GGATGCTTCCGCTTCTTTTTCCGATCACACCTGGGCTGTCGTTCTGTCCA
TTTGCCCGCTGTCTGACTGGATCTCCCGAACTCCTCTACGGCTCTTCCCG
TTACAAGAGGTCCATTGCTCTGCCGCTTCGCTCTTTGTCTGGATCTCACG
CACTCCTTCACACGAGATATCTGCAATCGGTGTGTATCTCACACCTGTGA
CCATCAAGTACGGACGCGTCAGGGACTTGTCCGCTTTTTCCGCGGCGTTC
TCCAATCCGCCGCTTTTCTGCTATCTGCAAAATTCTCCGCTTGCGTTATC
CGATTCTCCGCATTTTTTCCGACATGGCAACTTGCGCGGCTCTCTCGCTC
TCTTCCTCGCACACGCGCTGGCGCCCCCTCTCCTGTCACTCCGCCGACAG
CACTCTCCACTGCCTACCAGCACCCTCCGTCTAAGTTTGAAACGTATACA
TTTTCTGTTTCGTCGAGGAGCTCTCCACTATTCAAGCGTC
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