mRNA_Ecto-sp13_S_contig7967.19266.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: A0A6H5JJV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV6_9PHAE) HSP 1 Score: 231 bits (589), Expect = 2.280e-64 Identity = 147/284 (51.76%), Postives = 173/284 (60.92%), Query Frame = 1
Query: 319 ATSPGTQVGMQFP*RDIQTEMWQEDCHWAREGIESRPAVSG----VIDVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCAL-----PFHLTTCRWTRGSFDSSLDGANFPSGLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSCFSCPFTTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTI 1143
A P T+V P R ++ E W E P S V DV+ +V+WPEGT+EISL+LF K VEG+ WP GLE LSFCAL +H++ RGSF+ SL GANFP+GLREIFLG+AFDQPI+ VVWPQGLERLSLPG XXXXXXXXXXXXKSLEF +P I LR++ NTRL+ELD F PFTTLPASLE+ W+GDEFG +LE V WP +NLYL+ DWV RPPSGCKVT+
Sbjct: 83 AEIPPTRV--LHPRRVLRLEWTFRSHAWWAESTGQVPKPSAGTPSVGDVDFNEVQWPEGTREISLILFDKPVEGMAWPLGLECLSFCALRSGCGAWHVSD----RGSFNRSLVGANFPAGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFTSPLQICLREDPNTRLDELDLV-GVFDSPFTTLPASLETLWLGDEFGQSLESVNWPXXXXXX-----------XXXXXXXXXXXXXXXXXXXRNLYLVREVDWVERPPSGCKVTV 348
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: A0A6H5JNP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP2_9PHAE) HSP 1 Score: 210 bits (534), Expect = 1.420e-56 Identity = 132/252 (52.38%), Postives = 156/252 (61.90%), Query Frame = 1
Query: 424 RPAVSGVIDVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCALPFHLTTCRWT-RGSFDSSLDGANFPSGLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSCFSCPFTTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTIAGL*DTERLPF 1176
R G++D + +V+WPEG KE++LL F K VEGV WP GLE LSFCAL + RGSF+ SL GANFPSGLREIFLG+AFDQPI+ VVWPQGLERLSLPG XXXXXXXXXXXXKSLEF P+ I LR++ NTRL+ L+ R F+ PFT LPASLE+ W+G+ F +LEGV WPS QNLYL+ DW+ P S C +TI DTE F
Sbjct: 122 RALTMGIVDFD--EVQWPEGIKEVNLLSFDKEVEGVAWPKGLECLSFCALRLRCGPSGFANRGSFNRSLVGANFPSGLREIFLGDAFDQPIEDVVWPQGLERLSLPGCNXXXXXXXXXXXXKSLEFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTKLPASLEALWLGNNFCQSLEGVNWPSXXXXX-----------XXXXXXXXXXXXXXXXXXXQNLYLVNEMDWLEYPES-CMLTIVKDYDTESQSF 359
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: D8LHT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHT8_ECTSI) HSP 1 Score: 201 bits (510), Expect = 6.370e-54 Identity = 130/264 (49.24%), Postives = 154/264 (58.33%), Query Frame = 1
Query: 400 WAREGIESRP----AVSGVIDVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCALPFHLTTCRWT-RGSFDSSLDGANFPSGLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSCFSCPFTTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTIAGL*DTERLPF 1176
W E E P S V +V+L +V+WPEG KE++LLLF +EGV WPAGLERLSFCAL + + RGSF+ SL GANFPS LREIFLG+AFDQPI+ VVWP GLERLS PG XXXXXXXXXXXX F P+ I LR++ NTRL+ L+ R F+ PFT LPASLE+ W+G+ F +LEGV W QNLYL+ DW+ P S C VTI DTE F
Sbjct: 51 WWTETTEETPNSWAGASSVGNVDLSEVQWPEGIKEVNLLLFDGDIEGVAWPAGLERLSFCALRLSYGSSGFANRGSFNRSLVGANFPSDLREIFLGDAFDQPIEDVVWPSGLERLSFPGCNXXXXXXXXXXXXXXXXFSPPSQICLREDPNTRLDVLEPHRDRFNSPFTNLPASLEALWLGNNFCQSLEGVNWXXXXXXX-----------XXXXXXXXXXXXXXXXXXXQNLYLVNEMDWLEYPKS-CMVTIVKDYDTESQSF 302
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: A0A6H5JK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK73_9PHAE) HSP 1 Score: 185 bits (470), Expect = 9.700e-49 Identity = 119/247 (48.18%), Postives = 143/247 (57.89%), Query Frame = 1
Query: 442 VIDVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCALPFHLTTCRWTR-GSFDSSLDGANF--PSGLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSCFSCPFTTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTIAGL*DTERLP 1173
V +V+LR V WPEGTKE++L+LF K EG TWP LERLSF A + R GSF SL GANF PSGLR+IFLG AFDQPI VVWPQGL+RLS+P +XXXXXXXXXX P I L ++ NTRL+EL F+CPFT LPASLE+ W+GD+F +LEG+ WP +NL L+ +W+ RPPSGCKV IA D + P
Sbjct: 38 VSNVDLRDVHWPEGTKEVALILFDKAFEGATWPVSLERLSFYAFRSGGQSYRVKDIGSFKLSLVGANFSFPSGLRDIFLGAAFDQPIQDVVWPQGLQRLSVPRFXXXXXXXXXXPALNP-----PWEIRLTEDPNTRLDELGSYWDRFNCPFTHLPASLETLWLGDKFDHSLEGINWPXXXXXX-----------XXXXXXXXXXXXXXXXXXXRNLCLLREVNWIERPPSGCKVIIAQEDDLDNDP 268
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: A0A6H5JA66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA66_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.570e-28 Identity = 106/247 (42.91%), Postives = 129/247 (52.23%), Query Frame = 1
Query: 436 SGVIDVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCAL-PFHLTTCRWTRGS------FDSSLDGANFPSGLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSC-FSCPF---TTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTI 1143
SG DVEL +V+WP K ++L F V V WP+GLERL+F +L P R S F+ LD A FP LREIFLG + GLER+SLPG XXXXXXXXXXXXXKSLEF+ P I LR++ LE L+F F+ LPASLE W+ D +GV WP GLVTLGLG +F WP P ++ LYL+ R P GC+V +
Sbjct: 299 SGPADVELSEVQWPTNAKSVTLYFFNGCVARVAWPSGLERLAFGSLEPPKAAFGSAGRSSNPLGGIFNRRLDRAEFPDTLREIFLGMSXXXXXXXXXXXXGLERMSLPGXXXXXXXXXXXXXXKSLEFLPPGEILLREDPEITLERLNFTTETGFNQSLGGDNGLPASLERLWLSDA-ARPQDGVVWPRGLVTLGLGDSFPN--------TAPRLEWP---PTLRRLYLVDELSSARRVPRGCEVKV 533
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: A0A6H5JPY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY0_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.370e-27 Identity = 87/239 (36.40%), Postives = 111/239 (46.44%), Query Frame = 1
Query: 448 DVELRQVRWPEGTKEISLLLFQKTVEGVTWPAGLERLSFCALPFHLTTCRWTRGSFDSSLDGANFPS-------GLREIFLGEAFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFRRSCFSCPFTTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTI 1143
+V+L +V+WPEG KEI LLL + +EG+ W + FH R F +S FPS LR+ DQPID + W L KSLE TP+ + L + NT L E F PFTTLPASL + W+GD F +LE V WPSGLVTLGLG S + SW S N++NLYL+ +W PP GC+V +
Sbjct: 57 NVDLSEVQWPEGIKEIDLLLLDEVIEGMLW--------WVWSAFHSA-----RSDFPTSF--YYFPSKTLCGHKDLRDCLYLPGCDQPIDNLWWAPAL---------------------KSLESSTPSEVRLMETPNTNLHEPRLV-GVFDSPFTTLPASLATLWLGDSFCQSLEDVTWPSGLVTLGLGSTLS---------EFDSVSWSS---NLRNLYLVDEIEWAEYPP-GCRVNV 245
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Match: D8LI75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI75_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 3.310e-19 Identity = 75/160 (46.88%), Postives = 93/160 (58.13%), Query Frame = 1
Query: 676 AFDQPIDKVVWPQGLERLSLPGYXXXXXXXXXXXXXKSLEFVTPAHIHLRKNTNTRLEELDFR-RSCFSCPF---TTLPASLESFWIGDEFGMTLEGVQWPSGLVTLGLGFNFSGWHGMVGVYQGRGTSWPSGLPNVQNLYLIAGTDWVGRPPSGCKVTI 1143
+F+QPID+V WP GLER+SLPG XXXXXXXXXXXXXKSLEF+ P I LR++ LE L+F S F+ + LP SLE W+ D +GV WP GLVTLGLG +F WP P ++ LYL+ R P GC+V +
Sbjct: 2 SFNQPIDRVAWPDGLERMSLPGXXXXXXXXXXXXXXKSLEFLPPGEILLREDPEITLERLNFTTESGFNQSLGENSGLPVSLERLWLSDAT-RPQDGVVWPRGLVTLGLGDSFPN--------TAPRFEWP---PTLRRLYLVDELSSARRVPRGCEVKV 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7967.19266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7967.19266.1 >prot_Ecto-sp13_S_contig7967.19266.1 ID=prot_Ecto-sp13_S_contig7967.19266.1|Name=mRNA_Ecto-sp13_S_contig7967.19266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp MWQEDCHWAREGIESRPAVSGVIDVELRQVRWPEGTKEISLLLFQKTVEGback to top mRNA from alignment at Ecto-sp13_S_contig7967:1510..4201+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7967.19266.1 ID=mRNA_Ecto-sp13_S_contig7967.19266.1|Name=mRNA_Ecto-sp13_S_contig7967.19266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7967:1510..4201+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7967:1510..4201+ >mRNA_Ecto-sp13_S_contig7967.19266.1 ID=mRNA_Ecto-sp13_S_contig7967.19266.1|Name=mRNA_Ecto-sp13_S_contig7967.19266.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7967:1510..4201+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |