mRNA_Ecto-sp13_S_contig79651.19265.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79651.19265.1
Unique NamemRNA_Ecto-sp13_S_contig79651.19265.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79651.19265.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.280e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   22 QHQAHGTSLGAVFATGAAGSTAYALAGHVDY 114
            QHQAHGTSLGAVFATGAAGSTAYALAGHVDY
Sbjct:   34 QHQAHGTSLGAVFATGAAGSTAYALAGHVDY 64
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BLAST of mRNA_Ecto-sp13_S_contig79651.19265.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.610e-10
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1 
Query:   22 QHQAHGTSLGAVFATGAAGSTAYALAGHVDY 114
            QHQAHGTSLGAVFATGAAGSTAYALAGHVDY
Sbjct:  118 QHQAHGTSLGAVFATGAAGSTAYALAGHVDY 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79651.19265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF4_ECTSI1.280e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLQ9_9PHAE2.610e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79651contigEcto-sp13_S_contig79651:2..115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score62.4
Seed ortholog evalue5.3e-08
Seed eggNOG ortholog2880.D8LHF4
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Sulfite exporter TauE/SafE
EggNOG OGs2AJRJ@1,2RZ7R@2759
Cds size114
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464068.2110994-CDS-Ecto-sp13_S_contig79651:1..1151681464068.2110994-CDS-Ecto-sp13_S_contig79651:1..115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79651 2..115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79651.19265.1prot_Ecto-sp13_S_contig79651.19265.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79651 2..115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79651.19265.1

>prot_Ecto-sp13_S_contig79651.19265.1 ID=prot_Ecto-sp13_S_contig79651.19265.1|Name=mRNA_Ecto-sp13_S_contig79651.19265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
ILVLPYHQHQAHGTSLGAVFATGAAGSTAYALAGHVDY
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mRNA from alignment at Ecto-sp13_S_contig79651:2..115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79651.19265.1 ID=mRNA_Ecto-sp13_S_contig79651.19265.1|Name=mRNA_Ecto-sp13_S_contig79651.19265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79651:2..115- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACTTGTTCTACCATACCACCAGCACCAGGCGCACGGGACTTCTTTGGG
GGCAGTGTTTGCGACCGGGGCGGCTGGGTCGACAGCCTACGCGCTAGCCG
GTCATGTCGACTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79651:2..115-

>mRNA_Ecto-sp13_S_contig79651.19265.1 ID=mRNA_Ecto-sp13_S_contig79651.19265.1|Name=mRNA_Ecto-sp13_S_contig79651.19265.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79651:2..115- (Ectocarpus species13 EcNAP12_S_4_19m)
ATACTTGTTCTACCATACCACCAGCACCAGGCGCACGGGACTTCTTTGGG
GGCAGTGTTTGCGACCGGGGCGGCTGGGTCGACAGCCTACGCGCTAGCCG
GTCATGTCGACTAC
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